Wall clock time and date at job start Mon Mar 30 2020 02:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 110.06616 * 2 1 4 4 C 1.53996 * 109.91726 * 121.20532 * 2 1 3 5 5 H 1.09006 * 110.30750 * 359.11041 * 4 2 1 6 6 C 1.50701 * 110.30882 * 237.04682 * 4 2 1 7 7 C 1.38218 * 120.01139 * 292.80764 * 6 4 2 8 8 C 1.38225 * 120.02479 * 179.97438 * 7 6 4 9 9 C 1.38263 * 120.05405 * 0.02912 * 8 7 6 10 10 C 1.38182 * 120.02228 * 359.97438 * 9 8 7 11 11 C 1.38441 * 120.01518 * 112.53389 * 6 4 2 12 12 F 1.35096 * 120.02288 * 0.02562 * 11 6 4 13 13 C 1.54594 * 105.13993 * 118.12681 * 4 2 1 14 14 C 1.54933 * 102.92161 * 338.04568 * 13 4 2 15 15 N 1.47904 * 109.91802 * 238.79265 * 2 1 3 16 16 C 1.46900 * 110.99752 * 26.49429 * 15 2 1 17 17 C 1.50703 * 109.46664 * 169.99941 * 16 15 2 18 18 H 1.08000 * 120.00532 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99608 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00070 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00045 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.47006 * 59.99387 * 21 19 17 23 23 H 1.48492 * 109.47527 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46988 * 299.99830 * 21 19 17 25 25 H 1.09005 * 109.47679 * 298.79545 * 1 2 3 26 26 H 1.08998 * 109.47235 * 58.79496 * 1 2 3 27 27 H 1.09000 * 109.47218 * 178.79470 * 1 2 3 28 28 H 1.09003 * 109.47388 * 188.90811 * 3 2 1 29 29 H 1.09000 * 109.47152 * 308.91223 * 3 2 1 30 30 H 1.09000 * 109.46895 * 68.91159 * 3 2 1 31 31 H 1.07999 * 119.98535 * 0.02562 * 7 6 4 32 32 H 1.08004 * 119.97399 * 180.02562 * 8 7 6 33 33 H 1.08001 * 119.99138 * 179.97438 * 9 8 7 34 34 H 1.08000 * 120.00999 * 179.97438 * 10 9 8 35 35 H 1.09004 * 110.72191 * 96.40292 * 13 4 2 36 36 H 1.08998 * 110.72483 * 219.68151 * 13 4 2 37 37 H 1.09000 * 110.66636 * 155.84912 * 14 13 4 38 38 H 1.09001 * 110.66249 * 278.80797 * 14 13 4 39 39 H 1.08998 * 109.46752 * 289.99635 * 16 15 2 40 40 H 1.08997 * 109.46960 * 49.99886 * 16 15 2 41 41 H 0.96998 * 119.99870 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0549 1.4371 0.0000 4 6 2.0545 -0.7501 1.2384 5 1 1.2224 -1.1013 1.8487 6 6 2.9555 0.1451 2.0494 7 6 4.1734 0.5489 1.5354 8 6 4.9998 1.3705 2.2789 9 6 4.6096 1.7889 3.5376 10 6 3.3925 1.3864 4.0536 11 6 2.5613 0.5681 3.3073 12 9 1.3689 0.1781 3.8086 13 6 2.8535 -1.9483 0.6762 14 6 2.2660 -2.1193 -0.7472 15 7 2.0338 -0.7205 -1.1894 16 6 1.0591 -0.6703 -2.2873 17 6 1.6963 -1.1933 -3.5488 18 1 2.7228 -1.5290 -3.5364 19 6 0.9692 -1.2423 -4.7193 20 7 -0.2806 -0.8331 -4.7346 21 14 1.7591 -1.8899 -6.2832 22 1 2.1954 -3.2937 -6.0728 23 1 0.7739 -1.8393 -7.3931 24 1 2.9361 -1.0520 -6.6269 25 1 -0.3635 0.4950 0.9006 26 1 -0.3633 0.5324 -0.8790 27 1 -0.3634 -1.0274 -0.0216 28 1 3.1332 1.4301 -0.1591 29 1 1.5732 1.9999 -0.7996 30 1 1.8322 1.9052 0.9588 31 1 4.4790 0.2230 0.5522 32 1 5.9510 1.6858 1.8762 33 1 5.2563 2.4304 4.1178 34 1 3.0882 1.7130 5.0370 35 1 3.9171 -1.7145 0.6290 36 1 2.6803 -2.8424 1.2750 37 1 2.9822 -2.6158 -1.4018 38 1 1.3290 -2.6750 -0.7123 39 1 0.1953 -1.2852 -2.0346 40 1 0.7390 0.3600 -2.4421 41 1 -0.7922 -0.8679 -5.5579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879640772.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:14 Heat of formation + Delta-G solvation = -32.003607 kcal Electronic energy + Delta-G solvation = -22350.539894 eV Core-core repulsion = 19143.906561 eV Total energy + Delta-G solvation = -3206.633333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.83947 -41.45129 -39.25468 -35.43155 -33.82103 -33.28880 -31.42952 -30.79173 -28.44531 -27.86099 -26.34111 -24.28963 -23.81680 -22.96153 -21.42934 -19.50724 -18.49975 -18.47020 -17.37958 -16.90523 -16.67321 -16.59181 -16.07239 -15.85610 -15.38541 -15.02703 -14.64837 -14.56594 -14.15337 -14.03801 -13.93218 -13.43236 -13.36590 -13.18200 -12.82634 -12.75764 -12.63797 -12.48991 -12.37492 -12.15773 -12.06170 -11.78914 -11.70301 -11.50226 -11.39839 -11.19504 -10.58021 -9.69618 -9.47293 -9.07785 -8.18560 -6.28493 0.29362 0.36508 1.40733 1.43904 1.51722 2.40967 2.72164 3.13685 3.28882 3.40105 3.55377 3.72591 3.75460 4.02514 4.16897 4.22364 4.31368 4.36717 4.43460 4.48833 4.55998 4.61646 4.70623 4.77557 4.90513 4.95871 5.00866 5.05508 5.10111 5.11627 5.19769 5.23865 5.27351 5.34062 5.35875 5.42385 5.55090 5.62002 5.68462 6.05973 6.07541 6.32578 6.61229 6.88014 7.41237 8.92161 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030419 B = 0.004648 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.261106 B = 6022.132667 C = 6295.153765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.092 3.908 3 C -0.117 4.117 4 C -0.049 4.049 5 H 0.077 0.923 6 C -0.101 4.101 7 C -0.087 4.087 8 C -0.127 4.127 9 C -0.092 4.092 10 C -0.157 4.157 11 C 0.071 3.929 12 F -0.153 7.153 13 C -0.104 4.104 14 C 0.045 3.955 15 N -0.508 5.508 16 C 0.208 3.792 17 C -0.523 4.523 18 H 0.061 0.939 19 C 0.002 3.998 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.268 1.268 23 H -0.285 1.285 24 H -0.268 1.268 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.075 0.925 29 H 0.030 0.970 30 H 0.060 0.940 31 H 0.133 0.867 32 H 0.152 0.848 33 H 0.162 0.838 34 H 0.150 0.850 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.020 0.980 39 H -0.032 1.032 40 H 0.000 1.000 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.340 3.681 17.791 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.002 3.998 3 C -0.175 4.175 4 C -0.068 4.068 5 H 0.095 0.905 6 C -0.102 4.102 7 C -0.105 4.105 8 C -0.145 4.145 9 C -0.109 4.109 10 C -0.176 4.176 11 C 0.052 3.948 12 F -0.132 7.132 13 C -0.142 4.142 14 C -0.083 4.083 15 N -0.232 5.232 16 C 0.082 3.918 17 C -0.561 4.561 18 H 0.080 0.920 19 C -0.196 4.196 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.193 1.193 23 H -0.210 1.210 24 H -0.193 1.193 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.150 0.850 32 H 0.170 0.830 33 H 0.180 0.820 34 H 0.167 0.833 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.038 0.962 39 H -0.015 1.015 40 H 0.018 0.982 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.613 3.930 17.487 20.830 hybrid contribution -1.610 -0.796 -0.915 2.016 sum 9.002 3.134 16.573 19.118 Atomic orbital electron populations 1.22323 0.97115 1.00840 1.01437 1.21821 0.92241 0.95722 0.89982 1.21885 1.01981 0.93642 0.99972 1.20950 0.96920 0.94656 0.94259 0.90470 1.19668 0.96753 1.00523 0.93249 1.21103 0.92434 0.96959 0.99961 1.21521 1.00673 0.97542 0.94740 1.21350 0.95164 0.98768 0.95647 1.21360 0.95463 0.99335 1.01398 1.17856 0.82689 1.00494 0.93733 1.91432 1.44513 1.89831 1.87421 1.22633 1.00334 0.97123 0.94098 1.23044 0.98721 0.90558 0.95984 1.64876 1.42804 1.10498 1.05024 1.19441 0.89066 0.94233 0.89093 1.21478 0.98668 1.41551 0.94431 0.92050 1.25897 0.95297 0.95804 1.02616 1.70088 1.09991 1.48869 1.28682 0.85464 0.78114 0.79117 0.78084 1.19258 1.20999 1.19281 0.91370 0.93937 0.94104 0.90623 0.95079 0.92110 0.84957 0.83005 0.82044 0.83251 0.89270 0.89656 0.90837 0.96153 1.01472 0.98237 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.18 7.07 71.98 0.51 -5.67 16 2 C 0.09 3.38 0.84 3.67 0.00 3.38 16 3 C -0.12 -3.99 7.49 71.98 0.54 -3.45 16 4 C -0.05 -1.49 2.81 -10.66 -0.03 -1.52 16 5 H 0.08 2.41 6.79 -2.38 -0.02 2.40 16 6 C -0.10 -2.64 3.23 -19.82 -0.06 -2.70 16 7 C -0.09 -1.99 6.32 22.26 0.14 -1.84 16 8 C -0.13 -2.18 10.04 22.27 0.22 -1.95 16 9 C -0.09 -1.38 10.04 22.26 0.22 -1.16 16 10 C -0.16 -2.94 10.03 22.31 0.22 -2.71 16 11 C 0.07 1.77 7.20 22.37 0.16 1.93 16 12 F -0.15 -4.25 16.25 44.97 0.73 -3.52 16 13 C -0.10 -3.05 6.45 31.80 0.21 -2.84 16 14 C 0.05 1.73 6.10 86.65 0.53 2.26 16 15 N -0.51 -22.05 4.85 -838.65 -4.07 -26.13 16 16 C 0.21 11.25 3.36 85.56 0.29 11.54 16 17 C -0.52 -30.05 8.91 25.60 0.23 -29.82 16 18 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 19 C 0.00 0.09 5.46 84.65 0.46 0.55 16 20 N -0.94 -57.28 13.29 21.45 0.28 -56.99 16 21 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 26 H 0.04 1.86 6.48 -2.39 -0.02 1.85 16 27 H 0.04 1.64 7.67 -2.39 -0.02 1.62 16 28 H 0.08 2.42 5.56 -2.39 -0.01 2.40 16 29 H 0.03 1.15 8.13 -2.39 -0.02 1.13 16 30 H 0.06 1.85 7.10 -2.39 -0.02 1.83 16 31 H 0.13 3.25 6.62 -2.91 -0.02 3.23 16 32 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.09 2.37 6.35 -2.38 -0.02 2.35 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.02 0.84 7.82 -2.39 -0.02 0.82 16 39 H -0.03 -1.90 6.72 -2.39 -0.02 -1.92 16 40 H 0.00 -0.02 7.13 -2.39 -0.02 -0.04 16 41 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -66.02 321.69 3.63 -62.40 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.01 Total: 11.41 kcal Atomic # 6 Polarization: -37.63 SS G_CDS: 3.64 Total: -33.99 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -3.79 Total: -83.12 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.73 Total: -3.52 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -66.02 3.63 -62.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879640772.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.393 kcal (2) G-P(sol) polarization free energy of solvation -66.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds