Wall clock time and date at job start Mon Mar 30 2020 02:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38044 * 126.29398 * 2 1 4 4 C 1.47437 * 126.41283 * 359.97438 * 3 2 1 5 5 O 1.21606 * 119.99703 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99804 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99760 * 180.02562 * 6 4 3 8 8 C 1.54961 * 110.92632 * 91.53985 * 7 6 4 9 9 C 1.54270 * 104.16191 * 156.29508 * 8 7 6 10 10 C 1.53869 * 106.63967 * 336.44607 * 9 8 7 11 11 C 1.54268 * 106.60115 * 359.97438 * 10 9 8 12 12 C 1.41290 * 107.17528 * 180.24846 * 3 2 1 13 13 N 1.30445 * 108.01847 * 359.61608 * 12 3 2 14 14 N 1.34263 * 126.29127 * 180.02562 * 2 1 3 15 15 C 1.46498 * 125.75169 * 359.95592 * 14 2 1 16 16 C 1.50699 * 109.46978 * 90.00196 * 15 14 2 17 17 H 1.07998 * 120.00075 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99915 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00275 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00364 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47451 * 59.99228 * 20 18 16 22 22 H 1.48499 * 109.47511 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46641 * 299.99812 * 20 18 16 24 24 H 1.08998 * 109.47435 * 89.97349 * 1 2 3 25 25 H 1.09000 * 109.47122 * 209.98000 * 1 2 3 26 26 H 1.09006 * 109.47127 * 329.97536 * 1 2 3 27 27 H 0.96997 * 120.00419 * 0.02562 * 6 4 3 28 28 H 1.09001 * 110.67461 * 328.23097 * 7 6 4 29 29 H 1.08997 * 110.47708 * 37.64106 * 8 7 6 30 30 H 1.09002 * 110.53308 * 274.97498 * 8 7 6 31 31 H 1.09002 * 110.03399 * 217.13605 * 9 8 7 32 32 H 1.08995 * 110.02943 * 95.75505 * 9 8 7 33 33 H 1.08999 * 110.03405 * 119.26051 * 10 9 8 34 34 H 1.09001 * 110.03705 * 240.64196 * 10 9 8 35 35 H 1.08997 * 110.48788 * 142.28685 * 11 10 9 36 36 H 1.09000 * 110.48806 * 264.79985 * 11 10 9 37 37 H 1.07999 * 125.98992 * 179.74089 * 12 3 2 38 38 H 1.09003 * 109.46917 * 210.00216 * 15 14 2 39 39 H 1.08991 * 109.47032 * 329.99896 * 15 14 2 40 40 H 0.96996 * 120.00403 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6995 2.7878 -0.0006 6 7 2.8000 3.5107 -0.0010 7 6 2.3645 4.9094 -0.0009 8 6 2.2376 5.4496 1.4459 9 6 2.3877 6.9773 1.2930 10 6 3.1606 7.2153 -0.0160 11 6 3.4544 5.8237 -0.6136 12 6 3.6591 0.6499 -0.0059 13 7 3.6340 -0.6543 -0.0008 14 7 2.3017 -1.0822 -0.0005 15 6 1.8500 -2.4758 -0.0002 16 6 1.6943 -2.9537 -1.4209 17 1 1.9098 -2.2859 -2.2419 18 6 1.2768 -4.2433 -1.6726 19 7 1.0148 -5.0567 -0.6728 20 14 1.0844 -4.8360 -3.4336 21 1 2.3901 -4.7384 -4.1342 22 1 0.6265 -6.2486 -3.4333 23 1 0.0830 -3.9916 -4.1333 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3634 0.8898 0.5142 27 1 3.7462 3.2973 -0.0013 28 1 1.4220 5.0191 -0.5375 29 1 3.0336 5.0491 2.0736 30 1 1.2612 5.2020 1.8622 31 1 2.9467 7.3839 2.1358 32 1 1.4049 7.4452 1.2366 33 1 2.5525 7.7980 -0.7081 34 1 4.0943 7.7381 0.1913 35 1 3.3654 5.8484 -1.6996 36 1 4.4482 5.4849 -0.3208 37 1 4.5449 1.2676 -0.0113 38 1 2.5850 -3.0958 0.5132 39 1 0.8918 -2.5470 0.5142 40 1 0.7207 -5.9639 -0.8499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887614477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:41 Heat of formation + Delta-G solvation = 9.166370 kcal Electronic energy + Delta-G solvation = -21114.301529 eV Core-core repulsion = 17929.373423 eV Total energy + Delta-G solvation = -3184.928107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.77170 -39.27766 -37.43982 -33.97206 -33.47760 -32.02349 -31.10239 -28.89524 -28.31100 -26.91661 -26.36237 -23.46049 -22.15688 -20.79633 -20.52430 -19.75224 -18.89829 -17.09014 -16.75065 -16.38937 -15.68906 -15.06284 -14.79856 -14.48213 -14.30115 -13.96613 -13.54301 -13.40849 -13.12344 -12.64175 -12.43123 -12.32883 -12.08426 -11.76497 -11.61179 -11.46082 -11.44386 -11.31218 -11.12779 -10.86995 -10.85361 -10.63159 -10.36491 -10.15999 -9.94754 -9.35936 -8.87827 -8.70171 -8.57511 -7.89198 -6.32988 -4.40952 2.21592 2.81344 3.19603 3.20485 3.24392 3.29922 3.59926 3.92965 4.24810 4.39778 4.50326 4.69257 5.00630 5.10237 5.20400 5.26722 5.30251 5.32473 5.37790 5.45642 5.61940 5.64798 5.71870 5.77175 5.84818 5.92676 6.02021 6.12642 6.14685 6.16470 6.44449 6.59232 6.72275 6.81773 6.91740 7.17675 7.56662 7.77704 7.78500 7.82578 8.39493 8.63617 8.67065 9.25889 10.75215 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037221 B = 0.003374 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.083734 B = 8297.674910 C = 8316.835626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.165 3.835 3 C -0.333 4.333 4 C 0.604 3.396 5 O -0.557 6.557 6 N -0.728 5.728 7 C 0.143 3.857 8 C -0.136 4.136 9 C -0.123 4.123 10 C -0.122 4.122 11 C -0.132 4.132 12 C 0.057 3.943 13 N -0.296 5.296 14 N -0.314 5.314 15 C 0.251 3.749 16 C -0.541 4.541 17 H 0.065 0.935 18 C 0.068 3.932 19 N -0.890 5.890 20 Si 0.908 3.092 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.273 1.273 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.397 0.603 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.175 0.825 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 19.847 2.755 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.028 3.972 3 C -0.349 4.349 4 C 0.395 3.605 5 O -0.436 6.436 6 N -0.379 5.379 7 C 0.038 3.962 8 C -0.175 4.175 9 C -0.161 4.161 10 C -0.160 4.160 11 C -0.170 4.170 12 C -0.130 4.130 13 N -0.116 5.116 14 N -0.091 5.091 15 C 0.134 3.866 16 C -0.579 4.579 17 H 0.083 0.917 18 C -0.136 4.136 19 N -0.528 5.528 20 Si 0.735 3.265 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.198 1.198 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.231 0.769 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.192 0.808 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.354 18.565 2.810 19.074 hybrid contribution 0.080 0.141 -0.927 0.941 sum 3.434 18.706 1.883 19.111 Atomic orbital electron populations 1.20566 0.86833 1.03751 1.03904 1.21482 0.94956 0.86550 0.94253 1.19700 0.93114 0.92585 1.29466 1.17330 0.85077 0.83928 0.74192 1.90682 1.16736 1.84468 1.51723 1.45706 1.09612 1.05208 1.77366 1.21887 0.98432 0.80014 0.95849 1.22777 1.02512 0.94862 0.97386 1.22080 1.00389 0.96170 0.97505 1.22058 1.00309 0.96637 0.96960 1.22620 0.98809 0.95005 1.00554 1.23712 0.96342 0.92617 1.00311 1.77132 0.98640 1.12285 1.23562 1.49365 1.02478 1.08299 1.48984 1.19841 0.96393 0.70932 0.99406 1.21214 1.47540 0.98139 0.91012 0.91713 1.24921 0.94433 0.95972 0.98309 1.69903 1.44454 1.07206 1.31190 0.86376 0.78884 0.77747 0.83488 1.19897 1.20864 1.19837 0.89864 0.90909 0.88825 0.76875 0.88674 0.91356 0.91154 0.91820 0.91721 0.91646 0.91662 0.91061 0.91076 0.80807 0.92534 0.92571 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.57 36.00 0.34 -1.36 16 2 C 0.16 3.40 7.01 -81.60 -0.57 2.83 16 3 C -0.33 -6.15 6.13 -105.06 -0.64 -6.79 16 4 C 0.60 10.11 7.81 -12.52 -0.10 10.02 16 5 O -0.56 -10.70 14.48 5.27 0.08 -10.62 16 6 N -0.73 -9.02 5.18 -52.91 -0.27 -9.30 16 7 C 0.14 1.55 3.26 -65.89 -0.21 1.34 16 8 C -0.14 -1.36 6.53 -25.03 -0.16 -1.52 16 9 C -0.12 -0.96 6.80 -25.61 -0.17 -1.13 16 10 C -0.12 -0.86 6.80 -25.62 -0.17 -1.03 16 11 C -0.13 -1.06 6.45 -25.07 -0.16 -1.22 16 12 C 0.06 1.00 11.50 -16.98 -0.20 0.81 16 13 N -0.30 -6.42 12.50 30.86 0.39 -6.03 16 14 N -0.31 -7.18 3.56 -57.78 -0.21 -7.38 16 15 C 0.25 6.31 5.97 -5.20 -0.03 6.28 16 16 C -0.54 -14.67 9.39 -34.44 -0.32 -14.99 16 17 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 18 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 19 N -0.89 -24.72 13.29 55.43 0.74 -23.98 16 20 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 24 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 25 H 0.07 1.30 7.05 -51.93 -0.37 0.93 16 26 H 0.09 1.65 6.50 -51.93 -0.34 1.31 16 27 H 0.40 3.97 7.53 -40.82 -0.31 3.67 16 28 H 0.10 1.21 7.55 -51.93 -0.39 0.82 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.51 8.03 -51.93 -0.42 0.09 16 37 H 0.17 2.17 7.50 -52.49 -0.39 1.78 16 38 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.06 1.40 7.02 -51.93 -0.36 1.03 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 333.11 15.07 5.02 5.02 Total: -1.00 -30.66 333.11 -7.71 -38.37 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.93 Total: 3.11 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -2.50 Total: -5.06 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.64 Total: -46.69 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.66 -7.71 -38.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887614477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.541 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds