Wall clock time and date at job start Mon Mar 30 2020 02:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38044 * 126.29398 * 2 1 4 4 C 1.47437 * 126.41283 * 359.97438 * 3 2 1 5 5 O 1.21606 * 119.99703 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99804 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99760 * 180.02562 * 6 4 3 8 8 C 1.54961 * 110.92632 * 91.53985 * 7 6 4 9 9 C 1.54270 * 104.16191 * 156.29508 * 8 7 6 10 10 C 1.53869 * 106.63967 * 336.44607 * 9 8 7 11 11 C 1.54268 * 106.60115 * 359.97438 * 10 9 8 12 12 C 1.41290 * 107.17528 * 180.24846 * 3 2 1 13 13 N 1.30445 * 108.01847 * 359.61608 * 12 3 2 14 14 N 1.34263 * 126.29127 * 180.02562 * 2 1 3 15 15 C 1.46498 * 125.75169 * 359.95592 * 14 2 1 16 16 C 1.50699 * 109.46978 * 90.00196 * 15 14 2 17 17 H 1.07998 * 120.00075 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99915 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00275 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00364 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47451 * 59.99228 * 20 18 16 22 22 H 1.48499 * 109.47511 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46641 * 299.99812 * 20 18 16 24 24 H 1.08998 * 109.47435 * 89.97349 * 1 2 3 25 25 H 1.09000 * 109.47122 * 209.98000 * 1 2 3 26 26 H 1.09006 * 109.47127 * 329.97536 * 1 2 3 27 27 H 0.96997 * 120.00419 * 0.02562 * 6 4 3 28 28 H 1.09001 * 110.67461 * 328.23097 * 7 6 4 29 29 H 1.08997 * 110.47708 * 37.64106 * 8 7 6 30 30 H 1.09002 * 110.53308 * 274.97498 * 8 7 6 31 31 H 1.09002 * 110.03399 * 217.13605 * 9 8 7 32 32 H 1.08995 * 110.02943 * 95.75505 * 9 8 7 33 33 H 1.08999 * 110.03405 * 119.26051 * 10 9 8 34 34 H 1.09001 * 110.03705 * 240.64196 * 10 9 8 35 35 H 1.08997 * 110.48788 * 142.28685 * 11 10 9 36 36 H 1.09000 * 110.48806 * 264.79985 * 11 10 9 37 37 H 1.07999 * 125.98992 * 179.74089 * 12 3 2 38 38 H 1.09003 * 109.46917 * 210.00216 * 15 14 2 39 39 H 1.08991 * 109.47032 * 329.99896 * 15 14 2 40 40 H 0.96996 * 120.00403 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6995 2.7878 -0.0006 6 7 2.8000 3.5107 -0.0010 7 6 2.3645 4.9094 -0.0009 8 6 2.2376 5.4496 1.4459 9 6 2.3877 6.9773 1.2930 10 6 3.1606 7.2153 -0.0160 11 6 3.4544 5.8237 -0.6136 12 6 3.6591 0.6499 -0.0059 13 7 3.6340 -0.6543 -0.0008 14 7 2.3017 -1.0822 -0.0005 15 6 1.8500 -2.4758 -0.0002 16 6 1.6943 -2.9537 -1.4209 17 1 1.9098 -2.2859 -2.2419 18 6 1.2768 -4.2433 -1.6726 19 7 1.0148 -5.0567 -0.6728 20 14 1.0844 -4.8360 -3.4336 21 1 2.3901 -4.7384 -4.1342 22 1 0.6265 -6.2486 -3.4333 23 1 0.0830 -3.9916 -4.1333 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3634 0.8898 0.5142 27 1 3.7462 3.2973 -0.0013 28 1 1.4220 5.0191 -0.5375 29 1 3.0336 5.0491 2.0736 30 1 1.2612 5.2020 1.8622 31 1 2.9467 7.3839 2.1358 32 1 1.4049 7.4452 1.2366 33 1 2.5525 7.7980 -0.7081 34 1 4.0943 7.7381 0.1913 35 1 3.3654 5.8484 -1.6996 36 1 4.4482 5.4849 -0.3208 37 1 4.5449 1.2676 -0.0113 38 1 2.5850 -3.0958 0.5132 39 1 0.8918 -2.5470 0.5142 40 1 0.7207 -5.9639 -0.8499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887614477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:40 Heat of formation + Delta-G solvation = -9.990143 kcal Electronic energy + Delta-G solvation = -21115.132218 eV Core-core repulsion = 17929.373423 eV Total energy + Delta-G solvation = -3185.758796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.30904 -40.41849 -38.43378 -35.82782 -34.71448 -33.71489 -32.72130 -29.66670 -29.55626 -28.55045 -27.64410 -25.34812 -23.52100 -21.76664 -21.44726 -20.88934 -20.38689 -18.86979 -18.41493 -17.33730 -16.93333 -16.49170 -16.21768 -16.09246 -15.54612 -15.35589 -14.89413 -14.33041 -14.19693 -14.17096 -14.05751 -13.70920 -13.59811 -13.17466 -13.09342 -12.97818 -12.69255 -12.46666 -12.30466 -12.06829 -11.97639 -11.88348 -11.71834 -11.62610 -11.21119 -10.77701 -10.75916 -10.26847 -10.00736 -9.42395 -8.38365 -6.55115 0.68650 1.33091 1.38515 1.38941 1.47558 1.65849 2.31632 2.40915 2.55968 2.93746 3.64867 3.74352 3.78270 3.83284 4.04222 4.13900 4.23922 4.48595 4.54203 4.57759 4.60704 4.63792 4.68475 4.78793 4.82663 4.89310 4.97864 5.05285 5.14297 5.15947 5.23875 5.31056 5.34548 5.48213 5.53229 5.65306 5.73455 5.74173 6.04261 6.53763 6.68189 6.85710 7.16040 7.41076 8.69403 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037221 B = 0.003374 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.083734 B = 8297.674910 C = 8316.835626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.143 3.857 3 C -0.331 4.331 4 C 0.604 3.396 5 O -0.586 6.586 6 N -0.708 5.708 7 C 0.136 3.864 8 C -0.135 4.135 9 C -0.120 4.120 10 C -0.118 4.118 11 C -0.124 4.124 12 C 0.080 3.920 13 N -0.337 5.337 14 N -0.339 5.339 15 C 0.267 3.733 16 C -0.558 4.558 17 H 0.052 0.948 18 C 0.024 3.976 19 N -0.917 5.917 20 Si 0.972 3.028 21 H -0.272 1.272 22 H -0.273 1.273 23 H -0.267 1.267 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.412 0.588 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.228 0.772 38 H 0.031 0.969 39 H 0.050 0.950 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.890 21.898 1.994 22.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.008 3.992 3 C -0.347 4.347 4 C 0.393 3.607 5 O -0.468 6.468 6 N -0.359 5.359 7 C 0.031 3.969 8 C -0.174 4.174 9 C -0.158 4.158 10 C -0.156 4.156 11 C -0.162 4.162 12 C -0.107 4.107 13 N -0.156 5.156 14 N -0.116 5.116 15 C 0.149 3.851 16 C -0.596 4.596 17 H 0.070 0.930 18 C -0.178 4.178 19 N -0.555 5.555 20 Si 0.795 3.205 21 H -0.198 1.198 22 H -0.197 1.197 23 H -0.192 1.192 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.119 0.881 27 H 0.249 0.751 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.244 0.756 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.695 20.657 2.058 21.284 hybrid contribution -0.292 -0.362 -0.635 0.787 sum 4.403 20.296 1.423 20.817 Atomic orbital electron populations 1.20537 0.86002 1.03958 1.03859 1.21968 0.95907 0.86816 0.94546 1.19994 0.93329 0.93101 1.28227 1.17170 0.85184 0.83921 0.74388 1.90671 1.18102 1.84737 1.53243 1.45565 1.09750 1.05174 1.75384 1.22051 0.98794 0.79316 0.96709 1.22741 1.01479 0.96654 0.96539 1.22068 1.00856 0.94284 0.98598 1.22065 1.01071 0.96141 0.96360 1.22603 0.98323 0.94667 1.00601 1.24514 0.97633 0.91573 0.96960 1.77086 0.98287 1.14477 1.25786 1.49104 1.03400 1.07728 1.51340 1.19357 0.95252 0.72374 0.98143 1.21374 1.48091 0.98520 0.91570 0.92983 1.25738 0.93771 0.95899 1.02346 1.69989 1.44759 1.07612 1.33136 0.85397 0.78855 0.77683 0.78543 1.19757 1.19719 1.19159 0.89979 0.91090 0.88087 0.75119 0.90896 0.90857 0.93317 0.90525 0.91809 0.91252 0.89956 0.90785 0.89443 0.75605 0.95051 0.93239 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.23 9.57 71.24 0.68 -2.54 16 2 C 0.14 5.99 7.01 42.14 0.30 6.29 16 3 C -0.33 -11.91 6.13 -20.15 -0.12 -12.04 16 4 C 0.60 19.52 7.81 86.67 0.68 20.20 16 5 O -0.59 -22.39 14.48 -4.05 -0.06 -22.45 16 6 N -0.71 -15.94 5.18 -439.55 -2.28 -18.22 16 7 C 0.14 2.69 3.26 46.31 0.15 2.84 16 8 C -0.14 -2.47 6.53 31.70 0.21 -2.26 16 9 C -0.12 -1.57 6.80 31.32 0.21 -1.36 16 10 C -0.12 -1.29 6.80 31.32 0.21 -1.08 16 11 C -0.12 -1.60 6.45 31.67 0.20 -1.39 16 12 C 0.08 2.64 11.50 85.65 0.99 3.63 16 13 N -0.34 -14.53 12.50 -56.28 -0.70 -15.24 16 14 N -0.34 -15.82 3.56 -336.71 -1.20 -17.02 16 15 C 0.27 13.97 5.97 85.63 0.51 14.48 16 16 C -0.56 -30.99 9.39 25.60 0.24 -30.75 16 17 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 18 C 0.02 1.30 5.46 84.65 0.46 1.76 16 19 N -0.92 -51.65 13.29 21.45 0.28 -51.36 16 20 Si 0.97 42.81 29.54 68.60 2.03 44.84 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 24 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 25 H 0.07 2.64 7.05 -2.39 -0.02 2.63 16 26 H 0.10 3.62 6.50 -2.38 -0.02 3.60 16 27 H 0.41 6.76 7.53 -92.71 -0.70 6.06 16 28 H 0.07 1.81 7.55 -2.39 -0.02 1.79 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 0.88 8.03 -2.39 -0.02 0.86 16 37 H 0.23 4.69 7.50 -2.91 -0.02 4.67 16 38 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.05 2.59 7.02 -2.39 -0.02 2.58 16 40 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -67.60 333.11 3.14 -64.47 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.35 Total: 17.21 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 4.72 Total: -2.23 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -3.89 Total: -101.84 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.06 Total: -22.45 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -67.60 3.14 -64.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887614477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.476 kcal (2) G-P(sol) polarization free energy of solvation -67.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds