Wall clock time and date at job start Mon Mar 30 2020 02:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38041 * 126.29125 * 2 1 4 4 C 1.47426 * 126.41607 * 0.02562 * 3 2 1 5 5 O 1.21608 * 119.99925 * 327.89684 * 4 3 2 6 6 N 1.34775 * 120.00335 * 147.90205 * 4 3 2 7 7 C 1.46503 * 119.99887 * 3.94561 * 6 4 3 8 8 C 1.46497 * 120.00205 * 183.95028 * 6 4 3 9 9 C 1.53003 * 109.47103 * 89.99827 * 8 6 4 10 10 C 1.53004 * 117.49868 * 243.74427 * 9 8 6 11 11 C 1.53001 * 117.49825 * 175.08632 * 9 8 6 12 12 C 1.41293 * 107.17076 * 179.97438 * 3 2 1 13 13 N 1.30446 * 108.02283 * 359.74640 * 12 3 2 14 14 N 1.34257 * 126.29120 * 179.97438 * 2 1 3 15 15 C 1.46500 * 125.75276 * 359.97438 * 14 2 1 16 16 C 1.50703 * 109.46827 * 90.01305 * 15 14 2 17 17 H 1.08005 * 119.99687 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00157 * 179.72530 * 16 15 14 19 19 N 1.31516 * 119.99795 * 0.27200 * 18 16 15 20 20 Si 1.86796 * 119.99843 * 180.26954 * 18 16 15 21 21 H 1.48491 * 109.47470 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46913 * 119.99894 * 20 18 16 23 23 H 1.48503 * 109.47059 * 239.99677 * 20 18 16 24 24 H 1.09001 * 109.47362 * 270.02149 * 1 2 3 25 25 H 1.09001 * 109.47777 * 30.02111 * 1 2 3 26 26 H 1.09001 * 109.47476 * 150.02400 * 1 2 3 27 27 H 1.09001 * 109.46786 * 95.62908 * 7 6 4 28 28 H 1.08993 * 109.47226 * 215.63061 * 7 6 4 29 29 H 1.09004 * 109.46929 * 335.63478 * 7 6 4 30 30 H 1.08996 * 109.47475 * 209.99461 * 8 6 4 31 31 H 1.08994 * 109.47517 * 329.99812 * 8 6 4 32 32 H 1.08999 * 115.55012 * 29.41635 * 9 8 6 33 33 H 1.09004 * 117.49873 * 0.02562 * 10 9 8 34 34 H 1.09001 * 117.49773 * 145.01682 * 10 9 8 35 35 H 1.08996 * 117.49913 * 214.97788 * 11 9 8 36 36 H 1.08993 * 117.50195 * 0.02562 * 11 9 8 37 37 H 1.08003 * 125.98973 * 179.97438 * 12 3 2 38 38 H 1.09000 * 109.47392 * 330.00977 * 15 14 2 39 39 H 1.09003 * 109.47371 * 210.00377 * 15 14 2 40 40 H 0.96997 * 120.00171 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.8530 2.8358 -0.5587 6 7 2.6297 3.4575 0.6207 7 6 3.9162 3.0934 1.2196 8 6 2.1519 4.8403 0.6961 9 6 1.3216 5.0244 1.9680 10 6 -0.1593 5.3709 1.8009 11 6 0.8259 6.4356 2.2899 12 6 3.6590 0.6498 0.0006 13 7 3.6340 -0.6544 0.0064 14 7 2.3016 -1.0821 0.0005 15 6 1.8499 -2.4758 0.0016 16 6 1.6949 -2.9547 -1.4188 17 1 1.9108 -2.2875 -2.2402 18 6 1.2824 -4.2462 -1.6698 19 7 1.0191 -5.0585 -0.6696 20 14 1.0975 -4.8420 -3.4305 21 1 1.4527 -3.7438 -4.3647 22 1 2.0016 -5.9977 -3.6595 23 1 -0.3081 -5.2586 -3.6671 24 1 -0.3634 0.0004 1.0277 25 1 -0.3635 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 4.7191 3.3092 0.5147 28 1 4.0686 3.6702 2.1317 29 1 3.9180 2.0297 1.4577 30 1 3.0047 5.5187 0.7176 31 1 1.5350 5.0596 -0.1754 32 1 1.5973 4.3844 2.8061 33 1 -0.5421 5.4674 0.7849 34 1 -0.8578 4.9591 2.5294 35 1 0.7751 6.7239 3.3398 36 1 1.0908 7.2328 1.5955 37 1 4.5449 1.2676 0.0004 38 1 0.8914 -2.5467 0.5157 39 1 2.5847 -3.0955 0.5157 40 1 0.7293 -5.9671 -0.8461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888290127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:49 Heat of formation + Delta-G solvation = 63.688164 kcal Electronic energy + Delta-G solvation = -21443.307102 eV Core-core repulsion = 18260.743237 eV Total energy + Delta-G solvation = -3182.563864 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.87168 -39.16446 -37.21205 -35.05206 -33.82984 -32.07761 -31.19162 -28.66602 -27.07330 -26.82308 -25.68464 -23.43065 -22.45770 -21.68071 -20.63595 -19.74605 -18.41356 -16.87164 -16.72453 -16.27723 -15.50035 -15.22053 -14.93983 -14.58194 -14.31661 -13.87028 -13.58232 -13.26101 -12.94586 -12.61733 -12.51577 -12.31801 -12.16046 -11.93079 -11.70476 -11.61377 -11.57012 -11.45769 -11.04351 -10.90720 -10.55949 -10.34971 -10.18864 -10.05127 -9.88492 -9.35265 -8.70930 -8.59799 -8.49983 -7.86210 -6.33034 -4.40682 2.25980 2.81705 3.06801 3.17994 3.25998 3.31051 3.44247 3.73164 3.78422 4.25556 4.63331 4.77749 4.87317 4.99866 5.05914 5.18912 5.25209 5.29283 5.39259 5.44927 5.49448 5.60702 5.72117 5.75603 5.79661 5.83264 5.96205 6.01895 6.03701 6.13365 6.47749 6.55971 6.69319 6.80978 6.90751 7.18211 7.58023 7.62064 7.78185 7.81069 8.39947 8.59341 8.66239 9.26486 10.75127 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031665 B = 0.003859 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.031878 B = 7253.157691 C = 7584.818849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.159 3.841 3 C -0.329 4.329 4 C 0.606 3.394 5 O -0.548 6.548 6 N -0.617 5.617 7 C 0.069 3.931 8 C 0.149 3.851 9 C -0.168 4.168 10 C -0.170 4.170 11 C -0.180 4.180 12 C 0.050 3.950 13 N -0.297 5.297 14 N -0.313 5.313 15 C 0.251 3.749 16 C -0.540 4.540 17 H 0.066 0.934 18 C 0.067 3.933 19 N -0.890 5.890 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.181 0.819 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.015 18.060 6.291 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.022 3.978 3 C -0.345 4.345 4 C 0.397 3.603 5 O -0.426 6.426 6 N -0.350 5.350 7 C -0.075 4.075 8 C 0.026 3.974 9 C -0.188 4.188 10 C -0.207 4.207 11 C -0.218 4.218 12 C -0.136 4.136 13 N -0.117 5.117 14 N -0.090 5.090 15 C 0.134 3.866 16 C -0.578 4.578 17 H 0.084 0.916 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.734 3.266 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.205 1.205 24 H 0.092 0.908 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.198 0.802 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.108 16.761 6.040 17.940 hybrid contribution -0.352 0.231 -0.754 0.864 sum 1.756 16.992 5.286 17.882 Atomic orbital electron populations 1.20614 0.87123 1.05263 1.02966 1.21370 0.94782 0.86489 0.95119 1.19639 0.93324 0.92502 1.28989 1.17417 0.82378 0.83975 0.76546 1.90682 1.25092 1.81834 1.45020 1.47556 1.21261 1.08695 1.57503 1.22171 0.84426 1.03183 0.97682 1.20919 0.97736 0.82251 0.96480 1.22755 0.97187 0.98545 1.00281 1.22998 0.92385 1.02545 1.02792 1.22946 1.04914 0.92113 1.01807 1.23984 0.96472 0.92462 1.00656 1.77142 0.98631 1.12258 1.23697 1.49345 1.02459 1.08226 1.49015 1.19841 0.96352 0.70984 0.99429 1.21315 1.47348 0.98035 0.91091 0.91555 1.24928 0.94451 0.95997 0.98311 1.69923 1.44704 1.07079 1.31045 0.86270 0.77950 0.78852 0.83479 1.19481 1.20580 1.20539 0.90849 0.88629 0.89585 0.92751 0.91879 0.89093 0.90576 0.89691 0.87865 0.88405 0.89131 0.88991 0.88837 0.80225 0.92646 0.92525 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 9.66 36.00 0.35 -1.50 16 2 C 0.16 3.28 7.00 -81.61 -0.57 2.71 16 3 C -0.33 -6.15 5.54 -105.07 -0.58 -6.73 16 4 C 0.61 10.43 7.52 -12.52 -0.09 10.34 16 5 O -0.55 -10.78 14.90 5.27 0.08 -10.70 16 6 N -0.62 -8.09 2.87 -182.85 -0.53 -8.62 16 7 C 0.07 0.69 9.09 59.85 0.54 1.23 16 8 C 0.15 1.65 5.74 -4.04 -0.02 1.63 16 9 C -0.17 -1.75 6.01 -90.62 -0.54 -2.30 16 10 C -0.17 -1.78 10.18 -26.69 -0.27 -2.05 16 11 C -0.18 -1.52 10.25 -26.69 -0.27 -1.79 16 12 C 0.05 0.89 9.57 -16.98 -0.16 0.73 16 13 N -0.30 -6.42 12.50 30.86 0.39 -6.03 16 14 N -0.31 -7.13 3.56 -57.77 -0.21 -7.34 16 15 C 0.25 6.27 5.78 -5.19 -0.03 6.24 16 16 C -0.54 -14.66 9.39 -34.44 -0.32 -14.98 16 17 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 18 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 19 N -0.89 -24.66 13.29 55.43 0.74 -23.92 16 20 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 25 H 0.10 1.73 6.51 -51.93 -0.34 1.39 16 26 H 0.09 1.63 7.70 -51.93 -0.40 1.24 16 27 H 0.05 0.46 7.87 -51.93 -0.41 0.05 16 28 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 29 H 0.09 1.04 4.71 -51.93 -0.24 0.79 16 30 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 31 H 0.08 1.07 7.10 -51.93 -0.37 0.70 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.10 1.10 8.03 -51.93 -0.42 0.68 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.18 2.40 6.12 -52.48 -0.32 2.08 16 38 H 0.06 1.37 7.62 -51.93 -0.40 0.98 16 39 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 335.98 15.07 5.06 5.06 Total: -1.00 -30.89 335.98 -7.39 -38.28 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.82 Total: 2.09 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -2.08 Total: -4.78 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.39 Total: -45.91 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.89 -7.39 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888290127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.964 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds