Wall clock time and date at job start Mon Mar 30 2020 02:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38041 * 126.29125 * 2 1 4 4 C 1.47426 * 126.41607 * 0.02562 * 3 2 1 5 5 O 1.21608 * 119.99925 * 327.89684 * 4 3 2 6 6 N 1.34775 * 120.00335 * 147.90205 * 4 3 2 7 7 C 1.46503 * 119.99887 * 3.94561 * 6 4 3 8 8 C 1.46497 * 120.00205 * 183.95028 * 6 4 3 9 9 C 1.53003 * 109.47103 * 89.99827 * 8 6 4 10 10 C 1.53004 * 117.49868 * 243.74427 * 9 8 6 11 11 C 1.53001 * 117.49825 * 175.08632 * 9 8 6 12 12 C 1.41293 * 107.17076 * 179.97438 * 3 2 1 13 13 N 1.30446 * 108.02283 * 359.74640 * 12 3 2 14 14 N 1.34257 * 126.29120 * 179.97438 * 2 1 3 15 15 C 1.46500 * 125.75276 * 359.97438 * 14 2 1 16 16 C 1.50703 * 109.46827 * 90.01305 * 15 14 2 17 17 H 1.08005 * 119.99687 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00157 * 179.72530 * 16 15 14 19 19 N 1.31516 * 119.99795 * 0.27200 * 18 16 15 20 20 Si 1.86796 * 119.99843 * 180.26954 * 18 16 15 21 21 H 1.48491 * 109.47470 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46913 * 119.99894 * 20 18 16 23 23 H 1.48503 * 109.47059 * 239.99677 * 20 18 16 24 24 H 1.09001 * 109.47362 * 270.02149 * 1 2 3 25 25 H 1.09001 * 109.47777 * 30.02111 * 1 2 3 26 26 H 1.09001 * 109.47476 * 150.02400 * 1 2 3 27 27 H 1.09001 * 109.46786 * 95.62908 * 7 6 4 28 28 H 1.08993 * 109.47226 * 215.63061 * 7 6 4 29 29 H 1.09004 * 109.46929 * 335.63478 * 7 6 4 30 30 H 1.08996 * 109.47475 * 209.99461 * 8 6 4 31 31 H 1.08994 * 109.47517 * 329.99812 * 8 6 4 32 32 H 1.08999 * 115.55012 * 29.41635 * 9 8 6 33 33 H 1.09004 * 117.49873 * 0.02562 * 10 9 8 34 34 H 1.09001 * 117.49773 * 145.01682 * 10 9 8 35 35 H 1.08996 * 117.49913 * 214.97788 * 11 9 8 36 36 H 1.08993 * 117.50195 * 0.02562 * 11 9 8 37 37 H 1.08003 * 125.98973 * 179.97438 * 12 3 2 38 38 H 1.09000 * 109.47392 * 330.00977 * 15 14 2 39 39 H 1.09003 * 109.47371 * 210.00377 * 15 14 2 40 40 H 0.96997 * 120.00171 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.8530 2.8358 -0.5587 6 7 2.6297 3.4575 0.6207 7 6 3.9162 3.0934 1.2196 8 6 2.1519 4.8403 0.6961 9 6 1.3216 5.0244 1.9680 10 6 -0.1593 5.3709 1.8009 11 6 0.8259 6.4356 2.2899 12 6 3.6590 0.6498 0.0006 13 7 3.6340 -0.6544 0.0064 14 7 2.3016 -1.0821 0.0005 15 6 1.8499 -2.4758 0.0016 16 6 1.6949 -2.9547 -1.4188 17 1 1.9108 -2.2875 -2.2402 18 6 1.2824 -4.2462 -1.6698 19 7 1.0191 -5.0585 -0.6696 20 14 1.0975 -4.8420 -3.4305 21 1 1.4527 -3.7438 -4.3647 22 1 2.0016 -5.9977 -3.6595 23 1 -0.3081 -5.2586 -3.6671 24 1 -0.3634 0.0004 1.0277 25 1 -0.3635 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 4.7191 3.3092 0.5147 28 1 4.0686 3.6702 2.1317 29 1 3.9180 2.0297 1.4577 30 1 3.0047 5.5187 0.7176 31 1 1.5350 5.0596 -0.1754 32 1 1.5973 4.3844 2.8061 33 1 -0.5421 5.4674 0.7849 34 1 -0.8578 4.9591 2.5294 35 1 0.7751 6.7239 3.3398 36 1 1.0908 7.2328 1.5955 37 1 4.5449 1.2676 0.0004 38 1 0.8914 -2.5467 0.5157 39 1 2.5847 -3.0955 0.5157 40 1 0.7293 -5.9671 -0.8461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888290127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:49 Heat of formation + Delta-G solvation = 45.449226 kcal Electronic energy + Delta-G solvation = -21444.098001 eV Core-core repulsion = 18260.743237 eV Total energy + Delta-G solvation = -3183.354764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.39075 -40.38760 -38.15153 -36.22941 -35.69186 -33.81976 -32.78614 -29.96689 -28.54605 -28.24680 -26.85402 -25.31865 -23.22086 -22.94131 -21.77924 -21.06430 -19.82191 -18.86371 -18.14984 -17.35684 -16.96638 -16.46258 -16.34313 -16.05082 -15.66546 -15.15251 -14.80079 -14.58222 -14.34009 -14.11940 -13.78425 -13.67839 -13.58032 -13.38701 -13.17527 -12.95473 -12.74678 -12.61975 -12.51430 -12.33852 -12.31844 -11.81502 -11.75662 -11.33748 -10.86574 -10.77207 -10.70676 -10.22449 -9.65990 -9.37327 -8.38958 -6.55260 0.72669 1.33876 1.35305 1.38440 1.49288 1.67748 2.09201 2.31971 2.42926 2.92813 2.95821 3.71842 3.73871 3.84280 4.00369 4.10940 4.15194 4.19570 4.37586 4.46847 4.48535 4.59679 4.66234 4.69603 4.79031 4.82494 4.89386 4.91495 5.00635 5.03817 5.06569 5.14718 5.28346 5.32027 5.48457 5.62786 5.74338 5.75048 6.05533 6.45715 6.54427 6.83915 7.16025 7.31353 8.68960 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031665 B = 0.003859 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.031878 B = 7253.157691 C = 7584.818849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.139 3.861 3 C -0.328 4.328 4 C 0.602 3.398 5 O -0.581 6.581 6 N -0.607 5.607 7 C 0.061 3.939 8 C 0.147 3.853 9 C -0.177 4.177 10 C -0.192 4.192 11 C -0.152 4.152 12 C 0.074 3.926 13 N -0.336 5.336 14 N -0.338 5.338 15 C 0.268 3.732 16 C -0.556 4.556 17 H 0.049 0.951 18 C 0.025 3.975 19 N -0.915 5.915 20 Si 0.971 3.029 21 H -0.275 1.275 22 H -0.272 1.272 23 H -0.268 1.268 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.226 0.774 38 H 0.050 0.950 39 H 0.033 0.967 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.124 20.129 6.458 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.004 3.996 3 C -0.343 4.343 4 C 0.392 3.608 5 O -0.462 6.462 6 N -0.338 5.338 7 C -0.081 4.081 8 C 0.025 3.975 9 C -0.196 4.196 10 C -0.229 4.229 11 C -0.189 4.189 12 C -0.112 4.112 13 N -0.156 5.156 14 N -0.115 5.115 15 C 0.150 3.850 16 C -0.595 4.595 17 H 0.067 0.933 18 C -0.177 4.177 19 N -0.553 5.553 20 Si 0.795 3.205 21 H -0.199 1.199 22 H -0.197 1.197 23 H -0.193 1.193 24 H 0.111 0.889 25 H 0.114 0.886 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.129 0.871 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.242 0.758 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.242 18.863 6.241 20.132 hybrid contribution -0.646 -0.265 -0.734 1.013 sum 2.595 18.599 5.506 19.570 Atomic orbital electron populations 1.20578 0.86136 1.04431 1.04009 1.21865 0.95792 0.86679 0.95288 1.19933 0.93493 0.93108 1.27788 1.17289 0.82480 0.83946 0.77076 1.90667 1.26551 1.82188 1.46759 1.47611 1.21609 1.08774 1.55852 1.22399 0.83372 1.02786 0.99521 1.21105 0.98926 0.81371 0.96071 1.22712 0.96725 1.00299 0.99857 1.23009 0.92810 1.04842 1.02248 1.23028 1.01776 0.91202 1.02922 1.24691 0.97592 0.91420 0.97496 1.77094 0.98337 1.14307 1.25862 1.49080 1.03332 1.07673 1.51409 1.19354 0.95284 0.72384 0.98028 1.21431 1.48019 0.98377 0.91631 0.93274 1.25713 0.93798 0.95917 1.02247 1.69995 1.44915 1.07537 1.32895 0.85307 0.78516 0.78154 0.78519 1.19941 1.19711 1.19257 0.88903 0.88592 0.90998 0.90148 0.89040 0.90549 0.87125 0.91517 0.88210 0.89768 0.89383 0.87506 0.87393 0.75770 0.93188 0.94915 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.50 9.66 71.23 0.69 -2.81 16 2 C 0.14 5.83 7.00 42.14 0.29 6.13 16 3 C -0.33 -12.07 5.54 -20.15 -0.11 -12.18 16 4 C 0.60 20.11 7.52 86.66 0.65 20.76 16 5 O -0.58 -22.81 14.90 -4.06 -0.06 -22.87 16 6 N -0.61 -14.40 2.87 -850.68 -2.44 -16.84 16 7 C 0.06 1.00 9.09 127.77 1.16 2.16 16 8 C 0.15 2.87 5.74 86.38 0.50 3.37 16 9 C -0.18 -3.29 6.01 -10.79 -0.06 -3.35 16 10 C -0.19 -3.84 10.18 30.62 0.31 -3.53 16 11 C -0.15 -2.12 10.25 30.62 0.31 -1.81 16 12 C 0.07 2.52 9.57 85.65 0.82 3.34 16 13 N -0.34 -14.61 12.50 -56.27 -0.70 -15.31 16 14 N -0.34 -15.81 3.56 -336.70 -1.20 -17.01 16 15 C 0.27 13.98 5.78 85.63 0.50 14.48 16 16 C -0.56 -31.17 9.39 25.60 0.24 -30.93 16 17 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 18 C 0.02 1.35 5.46 84.65 0.46 1.81 16 19 N -0.92 -51.41 13.29 21.45 0.28 -51.13 16 20 Si 0.97 43.26 29.54 68.60 2.03 45.28 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 25 H 0.10 3.56 6.51 -2.39 -0.02 3.55 16 26 H 0.07 2.86 7.70 -2.39 -0.02 2.84 16 27 H 0.08 0.96 7.87 -2.39 -0.02 0.94 16 28 H 0.09 1.04 8.11 -2.39 -0.02 1.02 16 29 H 0.08 1.51 4.71 -2.39 -0.01 1.50 16 30 H 0.11 1.41 8.07 -2.39 -0.02 1.40 16 31 H 0.07 1.58 7.10 -2.39 -0.02 1.57 16 32 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 1.90 8.03 -2.39 -0.02 1.88 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.23 5.26 6.12 -2.91 -0.02 5.24 16 38 H 0.05 2.60 7.62 -2.39 -0.02 2.58 16 39 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -68.60 335.98 4.70 -63.90 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 1.04 Total: 16.54 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 5.76 Total: -2.57 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -4.06 Total: -100.28 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.06 Total: -22.87 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -68.60 4.70 -63.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888290127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.352 kcal (2) G-P(sol) polarization free energy of solvation -68.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds