Wall clock time and date at job start Mon Mar 30 2020 02:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38042 * 126.29735 * 2 1 4 4 C 1.47432 * 126.41123 * 0.02562 * 3 2 1 5 5 O 1.21613 * 119.99818 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00028 * 179.97438 * 4 3 2 7 7 C 1.46507 * 119.99842 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.46904 * 180.02562 * 7 6 4 9 9 C 1.52998 * 109.47191 * 180.02562 * 8 7 6 10 10 C 1.52995 * 117.50101 * 243.75043 * 9 8 7 11 11 C 1.52997 * 117.50046 * 175.08631 * 9 8 7 12 12 C 1.41283 * 107.17361 * 179.97438 * 3 2 1 13 13 N 1.30450 * 108.02431 * 359.72269 * 12 3 2 14 14 N 1.34263 * 126.28631 * 180.02562 * 2 1 3 15 15 C 1.46491 * 125.75867 * 359.97438 * 14 2 1 16 16 C 1.50702 * 109.46957 * 89.99963 * 15 14 2 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 H 1.09001 * 109.46848 * 269.99870 * 1 2 3 25 25 H 1.09001 * 109.46567 * 29.99509 * 1 2 3 26 26 H 1.08997 * 109.47219 * 149.99547 * 1 2 3 27 27 H 0.96999 * 119.99806 * 0.02562 * 6 4 3 28 28 H 1.08992 * 109.47141 * 300.00289 * 7 6 4 29 29 H 1.09000 * 109.46901 * 60.00498 * 7 6 4 30 30 H 1.08997 * 109.47527 * 300.00401 * 8 7 6 31 31 H 1.09006 * 109.47296 * 60.00036 * 8 7 6 32 32 H 1.09000 * 115.54722 * 29.42267 * 9 8 7 33 33 H 1.09002 * 117.49821 * 359.97438 * 10 9 8 34 34 H 1.08997 * 117.50316 * 145.02180 * 10 9 8 35 35 H 1.08997 * 117.50016 * 214.97875 * 11 9 8 36 36 H 1.09007 * 117.49791 * 0.02562 * 11 9 8 37 37 H 1.08004 * 125.98627 * 179.97438 * 12 3 2 38 38 H 1.09004 * 109.47166 * 330.00229 * 15 14 2 39 39 H 1.08994 * 109.47507 * 209.99935 * 15 14 2 40 40 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8860 2.5202 0.0005 5 8 0.6996 2.7878 0.0015 6 7 2.8001 3.5106 0.0010 7 6 2.3646 4.9094 0.0009 8 6 3.5903 5.8251 0.0009 9 6 3.1356 7.2860 0.0015 10 6 3.4983 8.1393 -1.2155 11 6 4.2166 8.3623 0.1177 12 6 3.6591 0.6497 0.0006 13 7 3.6340 -0.6545 0.0069 14 7 2.3016 -1.0823 -0.0005 15 6 1.8500 -2.4758 -0.0006 16 6 1.6947 -2.9534 -1.4215 17 1 1.9111 -2.2857 -2.2423 18 6 1.2822 -4.2447 -1.6735 19 7 1.0190 -5.0579 -0.6739 20 14 1.0970 -4.8390 -3.4347 21 1 2.4046 -4.7377 -4.1314 22 1 0.6439 -6.2532 -3.4348 23 1 0.0949 -3.9986 -4.1381 24 1 -0.3633 0.0000 1.0277 25 1 -0.3632 0.8901 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 3.7463 3.2972 0.0006 28 1 1.7664 5.1037 -0.8892 29 1 1.7657 5.1035 0.8908 30 1 4.1890 5.6310 0.8908 31 1 4.1889 5.6309 -0.8892 32 1 2.1781 7.4800 0.4849 33 1 4.0613 7.6601 -2.0164 34 1 2.7798 8.8951 -1.5325 35 1 3.9703 9.2647 0.6772 36 1 5.2520 8.0297 0.1934 37 1 4.5450 1.2675 0.0004 38 1 0.8915 -2.5472 0.5136 39 1 2.5848 -3.0959 0.5128 40 1 0.7285 -5.9662 -0.8513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889257474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:52 Heat of formation + Delta-G solvation = 39.246611 kcal Electronic energy + Delta-G solvation = -20563.813292 eV Core-core repulsion = 17380.189562 eV Total energy + Delta-G solvation = -3183.623730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.75566 -38.91472 -37.82408 -34.74073 -33.87096 -32.10049 -31.23267 -30.25728 -27.32660 -26.61048 -24.04279 -23.13610 -22.67695 -21.74487 -20.92208 -19.68358 -18.95715 -17.10348 -16.75376 -15.98585 -15.68884 -15.33938 -15.05884 -14.57523 -14.41411 -14.30373 -13.72249 -13.52779 -13.05195 -12.56624 -12.47567 -12.19069 -12.05481 -11.93096 -11.76523 -11.74483 -11.62503 -11.44990 -11.12574 -10.87548 -10.60012 -10.36429 -10.22465 -10.15209 -9.94940 -9.36796 -8.91984 -8.70499 -8.57047 -7.89392 -6.33193 -4.41248 2.21609 2.81211 3.18358 3.20444 3.24350 3.29391 3.45289 3.60788 3.95507 4.24693 4.40283 4.55293 4.60283 4.87475 5.00736 5.07446 5.15457 5.26726 5.30242 5.33005 5.36524 5.58726 5.59092 5.76172 5.78401 5.82134 5.89283 5.96307 6.04358 6.11830 6.48219 6.60506 6.67339 6.80244 6.90735 7.17716 7.56576 7.76952 7.77890 7.81557 8.39319 8.63243 8.66153 9.25662 10.74915 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034585 B = 0.002967 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.394821 B = 9436.222814 C = 9483.978980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.165 3.835 3 C -0.333 4.333 4 C 0.603 3.397 5 O -0.557 6.557 6 N -0.737 5.737 7 C 0.127 3.873 8 C -0.101 4.101 9 C -0.150 4.150 10 C -0.181 4.181 11 C -0.181 4.181 12 C 0.057 3.943 13 N -0.296 5.296 14 N -0.314 5.314 15 C 0.251 3.749 16 C -0.541 4.541 17 H 0.065 0.935 18 C 0.068 3.932 19 N -0.889 5.889 20 Si 0.908 3.092 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.273 1.273 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.397 0.603 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.175 0.825 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.475 20.693 2.006 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.028 3.972 3 C -0.348 4.348 4 C 0.393 3.607 5 O -0.436 6.436 6 N -0.389 5.389 7 C 0.003 3.997 8 C -0.139 4.139 9 C -0.168 4.168 10 C -0.218 4.218 11 C -0.218 4.218 12 C -0.130 4.130 13 N -0.116 5.116 14 N -0.091 5.091 15 C 0.134 3.866 16 C -0.580 4.580 17 H 0.083 0.917 18 C -0.136 4.136 19 N -0.527 5.527 20 Si 0.735 3.265 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.198 1.198 24 H 0.095 0.905 25 H 0.114 0.886 26 H 0.101 0.899 27 H 0.231 0.769 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.192 0.808 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.244 19.423 2.069 19.989 hybrid contribution 0.074 0.217 -0.929 0.957 sum 4.318 19.640 1.140 20.141 Atomic orbital electron populations 1.20614 0.86855 1.04843 1.03262 1.21484 0.94973 0.86505 0.94222 1.19695 0.93149 0.92569 1.29432 1.17311 0.85012 0.83923 0.74429 1.90691 1.16744 1.84517 1.51675 1.45722 1.09750 1.05589 1.77831 1.21204 0.96238 0.79963 1.02285 1.21378 0.97583 0.92165 1.02764 1.22188 0.99974 0.91726 1.02938 1.23071 1.03720 1.03241 0.91735 1.22983 0.97613 1.00446 1.00770 1.23711 0.96330 0.92621 1.00347 1.77130 0.98673 1.12281 1.23543 1.49370 1.02468 1.08300 1.48999 1.19842 0.96410 0.70937 0.99401 1.21224 1.47677 0.98061 0.91019 0.91698 1.24927 0.94437 0.95974 0.98311 1.69907 1.44443 1.07144 1.31188 0.86377 0.78887 0.77747 0.83487 1.19903 1.20867 1.19826 0.90520 0.88625 0.89909 0.76887 0.91635 0.91708 0.90859 0.91106 0.87432 0.88690 0.88852 0.88840 0.88764 0.80804 0.92563 0.92510 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 9.34 36.01 0.34 -1.46 16 2 C 0.17 3.42 7.01 -81.60 -0.57 2.85 16 3 C -0.33 -6.17 6.13 -105.07 -0.64 -6.81 16 4 C 0.60 10.19 7.81 -12.52 -0.10 10.09 16 5 O -0.56 -10.86 14.84 5.27 0.08 -10.78 16 6 N -0.74 -9.09 5.55 -61.38 -0.34 -9.44 16 7 C 0.13 1.33 5.63 -4.04 -0.02 1.31 16 8 C -0.10 -0.77 5.61 -26.73 -0.15 -0.92 16 9 C -0.15 -1.08 5.73 -90.62 -0.52 -1.60 16 10 C -0.18 -1.22 10.18 -26.69 -0.27 -1.49 16 11 C -0.18 -1.16 10.25 -26.69 -0.27 -1.43 16 12 C 0.06 1.00 11.50 -16.98 -0.20 0.80 16 13 N -0.30 -6.42 12.50 30.86 0.39 -6.03 16 14 N -0.31 -7.18 3.56 -57.78 -0.21 -7.39 16 15 C 0.25 6.30 5.78 -5.20 -0.03 6.27 16 16 C -0.54 -14.65 9.39 -34.44 -0.32 -14.97 16 17 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 18 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 19 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 20 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 24 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.10 1.74 6.50 -51.93 -0.34 1.40 16 26 H 0.08 1.58 7.70 -51.93 -0.40 1.18 16 27 H 0.40 3.89 7.43 -40.82 -0.30 3.59 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.51 7.88 -51.93 -0.41 0.10 16 32 H 0.11 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.09 0.63 8.03 -51.93 -0.42 0.21 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.17 2.16 7.50 -52.48 -0.39 1.76 16 38 H 0.06 1.40 7.62 -51.93 -0.40 1.00 16 39 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 342.41 15.07 5.16 5.16 Total: -1.00 -30.99 342.41 -8.07 -39.06 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.00 Total: 3.14 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -2.86 Total: -5.65 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.58 Total: -46.77 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.99 -8.07 -39.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889257474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.303 kcal (2) G-P(sol) polarization free energy of solvation -30.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds