Wall clock time and date at job start Mon Mar 30 2020 02:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38042 * 126.29735 * 2 1 4 4 C 1.47432 * 126.41123 * 0.02562 * 3 2 1 5 5 O 1.21613 * 119.99818 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00028 * 179.97438 * 4 3 2 7 7 C 1.46507 * 119.99842 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.46904 * 180.02562 * 7 6 4 9 9 C 1.52998 * 109.47191 * 180.02562 * 8 7 6 10 10 C 1.52995 * 117.50101 * 243.75043 * 9 8 7 11 11 C 1.52997 * 117.50046 * 175.08631 * 9 8 7 12 12 C 1.41283 * 107.17361 * 179.97438 * 3 2 1 13 13 N 1.30450 * 108.02431 * 359.72269 * 12 3 2 14 14 N 1.34263 * 126.28631 * 180.02562 * 2 1 3 15 15 C 1.46491 * 125.75867 * 359.97438 * 14 2 1 16 16 C 1.50702 * 109.46957 * 89.99963 * 15 14 2 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 H 1.09001 * 109.46848 * 269.99870 * 1 2 3 25 25 H 1.09001 * 109.46567 * 29.99509 * 1 2 3 26 26 H 1.08997 * 109.47219 * 149.99547 * 1 2 3 27 27 H 0.96999 * 119.99806 * 0.02562 * 6 4 3 28 28 H 1.08992 * 109.47141 * 300.00289 * 7 6 4 29 29 H 1.09000 * 109.46901 * 60.00498 * 7 6 4 30 30 H 1.08997 * 109.47527 * 300.00401 * 8 7 6 31 31 H 1.09006 * 109.47296 * 60.00036 * 8 7 6 32 32 H 1.09000 * 115.54722 * 29.42267 * 9 8 7 33 33 H 1.09002 * 117.49821 * 359.97438 * 10 9 8 34 34 H 1.08997 * 117.50316 * 145.02180 * 10 9 8 35 35 H 1.08997 * 117.50016 * 214.97875 * 11 9 8 36 36 H 1.09007 * 117.49791 * 0.02562 * 11 9 8 37 37 H 1.08004 * 125.98627 * 179.97438 * 12 3 2 38 38 H 1.09004 * 109.47166 * 330.00229 * 15 14 2 39 39 H 1.08994 * 109.47507 * 209.99935 * 15 14 2 40 40 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8860 2.5202 0.0005 5 8 0.6996 2.7878 0.0015 6 7 2.8001 3.5106 0.0010 7 6 2.3646 4.9094 0.0009 8 6 3.5903 5.8251 0.0009 9 6 3.1356 7.2860 0.0015 10 6 3.4983 8.1393 -1.2155 11 6 4.2166 8.3623 0.1177 12 6 3.6591 0.6497 0.0006 13 7 3.6340 -0.6545 0.0069 14 7 2.3016 -1.0823 -0.0005 15 6 1.8500 -2.4758 -0.0006 16 6 1.6947 -2.9534 -1.4215 17 1 1.9111 -2.2857 -2.2423 18 6 1.2822 -4.2447 -1.6735 19 7 1.0190 -5.0579 -0.6739 20 14 1.0970 -4.8390 -3.4347 21 1 2.4046 -4.7377 -4.1314 22 1 0.6439 -6.2532 -3.4348 23 1 0.0949 -3.9986 -4.1381 24 1 -0.3633 0.0000 1.0277 25 1 -0.3632 0.8901 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 3.7463 3.2972 0.0006 28 1 1.7664 5.1037 -0.8892 29 1 1.7657 5.1035 0.8908 30 1 4.1890 5.6310 0.8908 31 1 4.1889 5.6309 -0.8892 32 1 2.1781 7.4800 0.4849 33 1 4.0613 7.6601 -2.0164 34 1 2.7798 8.8951 -1.5325 35 1 3.9703 9.2647 0.6772 36 1 5.2520 8.0297 0.1934 37 1 4.5450 1.2675 0.0004 38 1 0.8915 -2.5472 0.5136 39 1 2.5848 -3.0959 0.5128 40 1 0.7285 -5.9662 -0.8513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889257474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:51 Heat of formation + Delta-G solvation = 20.133135 kcal Electronic energy + Delta-G solvation = -20564.642114 eV Core-core repulsion = 17380.189562 eV Total energy + Delta-G solvation = -3184.452552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.29683 -40.14865 -38.49119 -35.90003 -35.71328 -33.83850 -32.77574 -31.29447 -29.06334 -28.14339 -25.53869 -24.52751 -23.21343 -22.99292 -21.68246 -21.01143 -20.41617 -18.86281 -18.41870 -17.01652 -16.73989 -16.67487 -16.25307 -16.18681 -15.81528 -15.35671 -14.93685 -14.74997 -14.37977 -14.22020 -14.05372 -13.63345 -13.59204 -13.11667 -12.96753 -12.92236 -12.70657 -12.63161 -12.31382 -12.29841 -12.21707 -11.88061 -11.72123 -11.15192 -10.78630 -10.76318 -10.72794 -10.25822 -10.06919 -9.42341 -8.38120 -6.54807 0.69012 1.33375 1.38716 1.39079 1.47695 1.66490 2.31635 2.39345 2.56740 2.93855 2.96382 3.75118 3.76403 3.79734 4.01001 4.08446 4.14655 4.22612 4.31180 4.39812 4.56851 4.65149 4.65707 4.73234 4.79508 4.85799 4.90157 5.02912 5.10575 5.11275 5.16253 5.19667 5.32412 5.43272 5.48338 5.57393 5.69505 5.74525 6.04977 6.54221 6.66564 6.85970 7.16310 7.39408 8.69541 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034585 B = 0.002967 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.394821 B = 9436.222814 C = 9483.978980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.144 3.856 3 C -0.332 4.332 4 C 0.602 3.398 5 O -0.586 6.586 6 N -0.716 5.716 7 C 0.127 3.873 8 C -0.090 4.090 9 C -0.160 4.160 10 C -0.186 4.186 11 C -0.175 4.175 12 C 0.080 3.920 13 N -0.337 5.337 14 N -0.339 5.339 15 C 0.268 3.732 16 C -0.557 4.557 17 H 0.052 0.948 18 C 0.024 3.976 19 N -0.916 5.916 20 Si 0.971 3.029 21 H -0.273 1.273 22 H -0.273 1.273 23 H -0.267 1.267 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.413 0.587 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.228 0.772 38 H 0.050 0.950 39 H 0.032 0.968 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.598 22.493 1.379 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.008 3.992 3 C -0.347 4.347 4 C 0.392 3.608 5 O -0.468 6.468 6 N -0.368 5.368 7 C 0.004 3.996 8 C -0.127 4.127 9 C -0.179 4.179 10 C -0.223 4.223 11 C -0.212 4.212 12 C -0.107 4.107 13 N -0.157 5.157 14 N -0.116 5.116 15 C 0.149 3.851 16 C -0.596 4.596 17 H 0.070 0.930 18 C -0.178 4.178 19 N -0.554 5.554 20 Si 0.795 3.205 21 H -0.198 1.198 22 H -0.197 1.197 23 H -0.192 1.192 24 H 0.109 0.891 25 H 0.116 0.884 26 H 0.088 0.912 27 H 0.249 0.751 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.245 0.755 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.401 21.261 1.451 21.984 hybrid contribution -0.235 -0.188 -0.689 0.752 sum 5.165 21.073 0.762 21.710 Atomic orbital electron populations 1.20577 0.85984 1.04189 1.04034 1.21979 0.95943 0.86775 0.94466 1.19983 0.93365 0.93076 1.28270 1.17159 0.85118 0.83948 0.74624 1.90679 1.18123 1.84800 1.53235 1.45574 1.09942 1.05564 1.75704 1.21313 0.97638 0.79125 1.01524 1.21290 0.96165 0.91522 1.03734 1.22189 1.00378 0.91729 1.03592 1.23147 1.03957 1.03266 0.91911 1.23058 0.97656 1.00190 1.00293 1.24523 0.97635 0.91572 0.96949 1.77086 0.98316 1.14491 1.25786 1.49109 1.03398 1.07735 1.51382 1.19353 0.95253 0.72381 0.98122 1.21376 1.48186 0.98417 0.91572 0.93008 1.25740 0.93794 0.95918 1.02322 1.69992 1.44765 1.07545 1.33111 0.85403 0.78847 0.77683 0.78581 1.19785 1.19720 1.19163 0.89075 0.88363 0.91202 0.75054 0.92657 0.92302 0.89711 0.90245 0.87737 0.88477 0.88616 0.88237 0.88073 0.75547 0.93244 0.95025 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.36 9.34 71.24 0.67 -2.70 16 2 C 0.14 6.00 7.01 42.14 0.30 6.29 16 3 C -0.33 -11.86 6.13 -20.15 -0.12 -11.99 16 4 C 0.60 19.34 7.81 86.67 0.68 20.02 16 5 O -0.59 -22.37 14.84 -4.07 -0.06 -22.43 16 6 N -0.72 -15.74 5.55 -466.36 -2.59 -18.32 16 7 C 0.13 2.40 5.63 86.38 0.49 2.89 16 8 C -0.09 -1.10 5.61 30.59 0.17 -0.92 16 9 C -0.16 -1.96 5.73 -10.80 -0.06 -2.02 16 10 C -0.19 -2.13 10.18 30.62 0.31 -1.82 16 11 C -0.18 -1.80 10.25 30.62 0.31 -1.49 16 12 C 0.08 2.63 11.50 85.65 0.99 3.61 16 13 N -0.34 -14.49 12.50 -56.28 -0.70 -15.20 16 14 N -0.34 -15.80 3.56 -336.71 -1.20 -17.00 16 15 C 0.27 13.94 5.78 85.64 0.50 14.43 16 16 C -0.56 -30.91 9.39 25.60 0.24 -30.67 16 17 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 18 C 0.02 1.29 5.46 84.66 0.46 1.75 16 19 N -0.92 -51.48 13.29 21.45 0.28 -51.20 16 20 Si 0.97 42.76 29.54 68.60 2.03 44.79 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 H 0.09 3.07 8.14 -2.39 -0.02 3.06 16 25 H 0.10 3.60 6.50 -2.39 -0.02 3.59 16 26 H 0.07 2.75 7.70 -2.39 -0.02 2.74 16 27 H 0.41 6.48 7.43 -92.71 -0.69 5.79 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.87 7.88 -2.38 -0.02 0.85 16 32 H 0.10 1.34 8.08 -2.39 -0.02 1.32 16 33 H 0.10 1.07 8.03 -2.39 -0.02 1.05 16 34 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.23 4.62 7.50 -2.91 -0.02 4.60 16 38 H 0.05 2.58 7.62 -2.38 -0.02 2.56 16 39 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 Total: -1.00 -67.72 342.41 3.03 -64.69 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.35 Total: 17.27 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 4.92 Total: -2.61 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -4.21 Total: -101.71 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.06 Total: -22.43 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -67.72 3.03 -64.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889257474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.823 kcal (2) G-P(sol) polarization free energy of solvation -67.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds