Wall clock time and date at job start Mon Mar 30 2020 02:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38042 * 126.29021 * 2 1 4 4 C 1.47426 * 126.41524 * 0.02562 * 3 2 1 5 5 O 1.21595 * 120.00284 * 352.62993 * 4 3 2 6 6 N 1.34780 * 119.99687 * 172.62460 * 4 3 2 7 7 C 1.47471 * 125.63078 * 354.38363 * 6 4 3 8 8 C 1.54914 * 104.80934 * 204.13355 * 7 6 4 9 9 C 1.55157 * 101.61392 * 323.04091 * 8 7 6 10 10 C 1.47028 * 125.64843 * 174.45416 * 6 4 3 11 11 H 1.09003 * 110.00869 * 298.40406 * 10 6 4 12 12 C 1.52999 * 109.87920 * 59.49273 * 10 6 4 13 13 C 1.41294 * 107.16866 * 179.75553 * 3 2 1 14 14 N 1.30451 * 108.02141 * 0.24172 * 13 3 2 15 15 N 1.34259 * 126.28782 * 180.17200 * 2 1 3 16 16 C 1.46493 * 125.75553 * 359.96782 * 15 2 1 17 17 C 1.50701 * 109.46869 * 270.30381 * 16 15 2 18 18 H 1.08000 * 119.99983 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99939 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99720 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99880 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46892 * 89.99958 * 21 19 17 23 23 H 1.48497 * 109.46989 * 209.99892 * 21 19 17 24 24 H 1.48503 * 109.47096 * 330.00335 * 21 19 17 25 25 H 1.09006 * 109.47020 * 90.00108 * 1 2 3 26 26 H 1.08991 * 109.47211 * 210.00034 * 1 2 3 27 27 H 1.09000 * 109.47199 * 330.00751 * 1 2 3 28 28 H 1.09000 * 110.34673 * 85.31942 * 7 6 4 29 29 H 1.08996 * 110.40533 * 322.98123 * 7 6 4 30 30 H 1.09000 * 110.99826 * 204.94830 * 8 7 6 31 31 H 1.08991 * 111.00214 * 81.13528 * 8 7 6 32 32 H 1.09007 * 110.71399 * 153.84947 * 9 8 7 33 33 H 1.09004 * 110.72027 * 276.94012 * 9 8 7 34 34 H 1.08997 * 109.47168 * 179.26000 * 12 10 6 35 35 H 1.08998 * 109.47306 * 299.26663 * 12 10 6 36 36 H 1.09004 * 109.46815 * 59.26385 * 12 10 6 37 37 H 1.07994 * 125.99070 * 180.23880 * 13 3 2 38 38 H 1.08995 * 109.47628 * 30.30570 * 16 15 2 39 39 H 1.08999 * 109.47054 * 150.30743 * 16 15 2 40 40 H 0.97006 * 119.99377 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.7079 2.7904 -0.1341 6 7 2.7908 3.5077 0.1503 7 6 4.2252 3.3221 0.4381 8 6 4.6684 4.6449 1.1117 9 6 3.8370 5.6908 0.3228 10 6 2.5112 4.9480 0.0552 11 1 2.1444 5.1917 -0.9419 12 6 1.4707 5.3463 1.1038 13 6 3.6591 0.6498 0.0058 14 7 3.6340 -0.6544 0.0037 15 7 2.3016 -1.0822 -0.0032 16 6 1.8500 -2.4758 -0.0068 17 6 1.6886 -2.9550 1.4129 18 1 1.9016 -2.2884 2.2354 19 6 1.2701 -4.2451 1.6616 20 7 1.0121 -5.0573 0.6599 21 14 1.0707 -4.8393 3.4213 22 1 -0.3141 -4.5656 3.8823 23 1 1.3336 -6.2995 3.4834 24 1 2.0342 -4.1252 4.2971 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 4.7798 3.1629 -0.4866 29 1 4.3708 2.4828 1.1181 30 1 5.7369 4.8129 0.9770 31 1 4.4040 4.6526 2.1690 32 1 3.6649 6.5817 0.9270 33 1 4.3322 5.9509 -0.6128 34 1 1.2781 6.4170 1.0363 35 1 0.5456 4.7987 0.9241 36 1 1.8472 5.1069 2.0984 37 1 4.5449 1.2675 0.0109 38 1 0.8938 -2.5466 -0.5251 39 1 2.5870 -3.0952 -0.5178 40 1 0.7173 -5.9647 0.8350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889295547.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:09 Heat of formation + Delta-G solvation = 33.274039 kcal Electronic energy + Delta-G solvation = -21756.993174 eV Core-core repulsion = 18573.110454 eV Total energy + Delta-G solvation = -3183.882720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.87048 -39.55520 -37.09461 -33.94272 -32.43330 -31.73406 -31.15340 -30.77902 -27.30816 -26.66376 -25.96008 -23.70618 -23.26441 -21.30247 -20.79940 -19.33462 -18.37326 -16.95239 -16.72062 -15.99437 -15.48641 -15.20529 -14.65460 -14.57138 -13.86840 -13.62088 -13.43768 -13.20551 -13.03546 -12.69385 -12.52272 -12.39189 -12.15518 -12.05525 -11.94055 -11.73577 -11.45151 -11.10969 -11.06963 -10.89079 -10.82492 -10.77680 -10.35842 -10.14079 -9.92132 -9.28701 -8.70907 -8.60536 -8.47096 -7.87088 -6.33233 -4.41190 2.22052 2.82853 3.10723 3.18127 3.24711 3.29218 3.46611 3.91123 4.24573 4.39092 4.45574 4.76497 5.00901 5.05818 5.16133 5.25726 5.26275 5.34395 5.49487 5.52326 5.59831 5.62504 5.72405 5.75534 5.79075 5.91204 5.98303 6.07041 6.12379 6.29973 6.48941 6.55003 6.68435 6.81988 6.91722 7.19518 7.57049 7.78017 7.78671 7.81070 8.40132 8.62839 8.66162 9.25769 10.74907 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028546 B = 0.004138 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.638509 B = 6765.537345 C = 6915.064313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.164 3.836 3 C -0.328 4.328 4 C 0.619 3.381 5 O -0.553 6.553 6 N -0.618 5.618 7 C 0.093 3.907 8 C -0.134 4.134 9 C -0.129 4.129 10 C 0.138 3.862 11 H 0.071 0.929 12 C -0.163 4.163 13 C 0.046 3.954 14 N -0.297 5.297 15 N -0.314 5.314 16 C 0.251 3.749 17 C -0.541 4.541 18 H 0.065 0.935 19 C 0.068 3.932 20 N -0.889 5.889 21 Si 0.908 3.092 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.272 1.272 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.184 0.816 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.974 18.400 -0.705 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.027 3.973 3 C -0.344 4.344 4 C 0.412 3.588 5 O -0.432 6.432 6 N -0.353 5.353 7 C -0.030 4.030 8 C -0.172 4.172 9 C -0.167 4.167 10 C 0.035 3.965 11 H 0.089 0.911 12 C -0.221 4.221 13 C -0.141 4.141 14 N -0.117 5.117 15 N -0.091 5.091 16 C 0.134 3.866 17 C -0.579 4.579 18 H 0.083 0.917 19 C -0.136 4.136 20 N -0.527 5.527 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.196 1.196 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.200 0.800 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.912 17.004 -0.852 17.720 hybrid contribution -0.358 0.232 0.904 0.999 sum 4.554 17.235 0.052 17.827 Atomic orbital electron populations 1.20574 0.86854 1.04581 1.03285 1.21449 0.94930 0.86484 0.94422 1.19633 0.93187 0.92330 1.29211 1.16968 0.83950 0.83208 0.74644 1.90669 1.16608 1.83976 1.51949 1.48253 1.08778 1.05417 1.72879 1.22634 0.81913 0.98639 0.99862 1.22800 1.00115 0.94282 1.00020 1.22711 0.95023 0.98164 1.00813 1.21438 0.95349 0.80403 0.99337 0.91132 1.22169 1.00465 1.00911 0.98601 1.24280 0.96881 0.92571 1.00351 1.77144 0.98638 1.12364 1.23562 1.49374 1.02527 1.08253 1.48937 1.19844 0.96415 0.70974 0.99402 1.21261 1.47451 0.98148 0.91039 0.91672 1.24926 0.94465 0.95976 0.98273 1.69918 1.44486 1.07207 1.31058 0.86324 0.78759 0.77971 0.83489 1.20197 1.20782 1.19635 0.90454 0.89931 0.88948 0.91273 0.89569 0.89943 0.90600 0.90152 0.90717 0.92348 0.90594 0.92743 0.79956 0.92585 0.92500 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 9.27 36.01 0.33 -1.43 16 2 C 0.16 3.45 7.00 -81.60 -0.57 2.88 16 3 C -0.33 -6.29 6.04 -105.07 -0.64 -6.93 16 4 C 0.62 10.98 7.65 -12.52 -0.10 10.88 16 5 O -0.55 -10.90 13.65 5.28 0.07 -10.82 16 6 N -0.62 -8.52 3.08 -164.24 -0.51 -9.02 16 7 C 0.09 0.98 5.10 -2.50 -0.01 0.96 16 8 C -0.13 -1.05 7.08 -24.58 -0.17 -1.23 16 9 C -0.13 -1.01 6.49 -24.90 -0.16 -1.17 16 10 C 0.14 1.56 3.53 -66.96 -0.24 1.32 16 11 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 12 C -0.16 -1.87 9.06 37.16 0.34 -1.53 16 13 C 0.05 0.83 10.27 -16.98 -0.17 0.65 16 14 N -0.30 -6.53 12.50 30.86 0.39 -6.14 16 15 N -0.31 -7.24 3.56 -57.78 -0.21 -7.45 16 16 C 0.25 6.32 5.78 -5.20 -0.03 6.29 16 17 C -0.54 -14.64 9.39 -34.44 -0.32 -14.96 16 18 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 19 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 20 N -0.89 -24.67 13.29 55.43 0.74 -23.93 16 21 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 26 H 0.08 1.58 7.71 -51.93 -0.40 1.18 16 27 H 0.09 1.68 6.68 -51.93 -0.35 1.34 16 28 H 0.07 0.65 7.72 -51.93 -0.40 0.24 16 29 H 0.09 0.97 5.93 -51.93 -0.31 0.66 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.53 7.83 -51.92 -0.41 0.12 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 1.09 6.56 -51.93 -0.34 0.75 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.18 2.51 4.87 -52.49 -0.26 2.26 16 38 H 0.06 1.40 7.64 -51.93 -0.40 1.00 16 39 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 325.26 15.07 4.90 4.90 Total: -1.00 -30.90 325.26 -7.26 -38.16 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.78 Total: 1.03 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -1.84 Total: -2.55 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.41 Total: -46.55 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.07 Total: -10.82 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.90 -7.26 -38.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889295547.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.432 kcal (2) G-P(sol) polarization free energy of solvation -30.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds