Wall clock time and date at job start Mon Mar 30 2020 02:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38042 * 126.29021 * 2 1 4 4 C 1.47426 * 126.41524 * 0.02562 * 3 2 1 5 5 O 1.21595 * 120.00284 * 352.62993 * 4 3 2 6 6 N 1.34780 * 119.99687 * 172.62460 * 4 3 2 7 7 C 1.47471 * 125.63078 * 354.38363 * 6 4 3 8 8 C 1.54914 * 104.80934 * 204.13355 * 7 6 4 9 9 C 1.55157 * 101.61392 * 323.04091 * 8 7 6 10 10 C 1.47028 * 125.64843 * 174.45416 * 6 4 3 11 11 H 1.09003 * 110.00869 * 298.40406 * 10 6 4 12 12 C 1.52999 * 109.87920 * 59.49273 * 10 6 4 13 13 C 1.41294 * 107.16866 * 179.75553 * 3 2 1 14 14 N 1.30451 * 108.02141 * 0.24172 * 13 3 2 15 15 N 1.34259 * 126.28782 * 180.17200 * 2 1 3 16 16 C 1.46493 * 125.75553 * 359.96782 * 15 2 1 17 17 C 1.50701 * 109.46869 * 270.30381 * 16 15 2 18 18 H 1.08000 * 119.99983 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99939 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99720 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99880 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46892 * 89.99958 * 21 19 17 23 23 H 1.48497 * 109.46989 * 209.99892 * 21 19 17 24 24 H 1.48503 * 109.47096 * 330.00335 * 21 19 17 25 25 H 1.09006 * 109.47020 * 90.00108 * 1 2 3 26 26 H 1.08991 * 109.47211 * 210.00034 * 1 2 3 27 27 H 1.09000 * 109.47199 * 330.00751 * 1 2 3 28 28 H 1.09000 * 110.34673 * 85.31942 * 7 6 4 29 29 H 1.08996 * 110.40533 * 322.98123 * 7 6 4 30 30 H 1.09000 * 110.99826 * 204.94830 * 8 7 6 31 31 H 1.08991 * 111.00214 * 81.13528 * 8 7 6 32 32 H 1.09007 * 110.71399 * 153.84947 * 9 8 7 33 33 H 1.09004 * 110.72027 * 276.94012 * 9 8 7 34 34 H 1.08997 * 109.47168 * 179.26000 * 12 10 6 35 35 H 1.08998 * 109.47306 * 299.26663 * 12 10 6 36 36 H 1.09004 * 109.46815 * 59.26385 * 12 10 6 37 37 H 1.07994 * 125.99070 * 180.23880 * 13 3 2 38 38 H 1.08995 * 109.47628 * 30.30570 * 16 15 2 39 39 H 1.08999 * 109.47054 * 150.30743 * 16 15 2 40 40 H 0.97006 * 119.99377 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.7079 2.7904 -0.1341 6 7 2.7908 3.5077 0.1503 7 6 4.2252 3.3221 0.4381 8 6 4.6684 4.6449 1.1117 9 6 3.8370 5.6908 0.3228 10 6 2.5112 4.9480 0.0552 11 1 2.1444 5.1917 -0.9419 12 6 1.4707 5.3463 1.1038 13 6 3.6591 0.6498 0.0058 14 7 3.6340 -0.6544 0.0037 15 7 2.3016 -1.0822 -0.0032 16 6 1.8500 -2.4758 -0.0068 17 6 1.6886 -2.9550 1.4129 18 1 1.9016 -2.2884 2.2354 19 6 1.2701 -4.2451 1.6616 20 7 1.0121 -5.0573 0.6599 21 14 1.0707 -4.8393 3.4213 22 1 -0.3141 -4.5656 3.8823 23 1 1.3336 -6.2995 3.4834 24 1 2.0342 -4.1252 4.2971 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 4.7798 3.1629 -0.4866 29 1 4.3708 2.4828 1.1181 30 1 5.7369 4.8129 0.9770 31 1 4.4040 4.6526 2.1690 32 1 3.6649 6.5817 0.9270 33 1 4.3322 5.9509 -0.6128 34 1 1.2781 6.4170 1.0363 35 1 0.5456 4.7987 0.9241 36 1 1.8472 5.1069 2.0984 37 1 4.5449 1.2675 0.0109 38 1 0.8938 -2.5466 -0.5251 39 1 2.5870 -3.0952 -0.5178 40 1 0.7173 -5.9647 0.8350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889295547.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:09 Heat of formation + Delta-G solvation = 14.332452 kcal Electronic energy + Delta-G solvation = -21757.814543 eV Core-core repulsion = 18573.110454 eV Total energy + Delta-G solvation = -3184.704089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.40081 -40.71396 -38.28478 -35.85335 -34.06415 -33.09885 -32.36901 -31.93686 -29.11586 -28.21149 -26.83912 -25.47205 -24.51724 -22.40586 -22.10984 -20.56786 -19.79465 -18.87510 -18.17302 -17.04408 -16.88523 -16.58725 -16.37679 -16.10840 -15.21856 -14.94048 -14.62645 -14.34330 -14.30631 -14.14671 -13.79141 -13.67233 -13.55911 -13.39577 -13.11757 -13.09976 -12.96619 -12.78241 -12.71001 -12.32988 -11.91404 -11.81596 -11.73509 -11.60501 -11.45438 -10.77180 -10.69241 -10.28049 -9.73764 -9.36594 -8.38974 -6.55750 0.65759 1.30167 1.36904 1.37788 1.48182 1.64469 2.13649 2.31749 2.49984 2.93065 3.53248 3.70895 3.73197 3.86224 4.08666 4.11731 4.22182 4.28790 4.42235 4.44398 4.55174 4.62672 4.69079 4.76490 4.79404 4.87456 4.95824 5.02072 5.04074 5.10524 5.16596 5.20272 5.32615 5.42406 5.47667 5.58019 5.71436 5.73264 6.02797 6.53242 6.59159 6.80397 7.15504 7.31294 8.69000 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028546 B = 0.004138 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.638509 B = 6765.537345 C = 6915.064313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.144 3.856 3 C -0.329 4.329 4 C 0.613 3.387 5 O -0.581 6.581 6 N -0.615 5.615 7 C 0.079 3.921 8 C -0.125 4.125 9 C -0.117 4.117 10 C 0.127 3.873 11 H 0.065 0.935 12 C -0.159 4.159 13 C 0.067 3.933 14 N -0.335 5.335 15 N -0.337 5.337 16 C 0.267 3.733 17 C -0.557 4.557 18 H 0.051 0.949 19 C 0.025 3.975 20 N -0.916 5.916 21 Si 0.972 3.028 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.273 1.273 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.052 0.948 37 H 0.228 0.772 38 H 0.050 0.950 39 H 0.032 0.968 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.451 20.608 0.124 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.008 3.992 3 C -0.344 4.344 4 C 0.405 3.595 5 O -0.463 6.463 6 N -0.348 5.348 7 C -0.043 4.043 8 C -0.163 4.163 9 C -0.155 4.155 10 C 0.025 3.975 11 H 0.083 0.917 12 C -0.217 4.217 13 C -0.119 4.119 14 N -0.155 5.155 15 N -0.114 5.114 16 C 0.149 3.851 17 C -0.595 4.595 18 H 0.069 0.931 19 C -0.177 4.177 20 N -0.554 5.554 21 Si 0.796 3.204 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.198 1.198 25 H 0.109 0.891 26 H 0.090 0.910 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.130 0.870 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.243 0.757 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.419 19.252 -0.027 20.294 hybrid contribution -0.772 -0.308 0.605 1.028 sum 5.647 18.944 0.578 19.776 Atomic orbital electron populations 1.20532 0.85847 1.04027 1.03998 1.21938 0.95942 0.86660 0.94620 1.19950 0.93395 0.92993 1.28067 1.16829 0.84201 0.83330 0.75153 1.90652 1.17880 1.84323 1.53437 1.48323 1.09695 1.05881 1.70878 1.22941 0.80092 1.00305 1.00991 1.22805 1.01773 0.92197 0.99478 1.22708 0.92582 0.98173 1.02042 1.21728 0.97588 0.79189 0.98998 0.91734 1.22114 0.98905 1.02104 0.98561 1.24979 0.97961 0.91553 0.97370 1.77095 0.98375 1.14336 1.25669 1.49130 1.03364 1.07733 1.51182 1.19377 0.95266 0.72280 0.98225 1.21389 1.48096 0.98533 0.91482 0.93058 1.25736 0.93764 0.95866 1.02318 1.70000 1.44747 1.07649 1.33015 0.85338 0.78956 0.77680 0.78442 1.19128 1.19754 1.19822 0.89130 0.91031 0.88666 0.89348 0.90352 0.87004 0.90875 0.88238 0.89000 0.89725 0.94086 0.92844 0.75657 0.93240 0.94961 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.31 9.27 71.24 0.66 -2.65 16 2 C 0.14 6.21 7.00 42.14 0.30 6.50 16 3 C -0.33 -12.57 6.04 -20.15 -0.12 -12.69 16 4 C 0.61 21.48 7.65 86.66 0.66 22.14 16 5 O -0.58 -23.17 13.65 -4.02 -0.05 -23.22 16 6 N -0.61 -15.82 3.08 -791.78 -2.44 -18.26 16 7 C 0.08 1.40 5.10 86.85 0.44 1.85 16 8 C -0.12 -1.42 7.08 31.99 0.23 -1.20 16 9 C -0.12 -1.33 6.49 31.78 0.21 -1.12 16 10 C 0.13 2.59 3.53 45.34 0.16 2.75 16 11 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 12 C -0.16 -3.40 9.06 71.98 0.65 -2.74 16 13 C 0.07 2.39 10.27 85.65 0.88 3.27 16 14 N -0.33 -14.88 12.50 -56.27 -0.70 -15.58 16 15 N -0.34 -16.05 3.56 -336.72 -1.20 -17.25 16 16 C 0.27 14.06 5.78 85.63 0.49 14.56 16 17 C -0.56 -31.06 9.39 25.60 0.24 -30.82 16 18 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 19 C 0.02 1.34 5.46 84.66 0.46 1.80 16 20 N -0.92 -51.60 13.29 21.45 0.28 -51.31 16 21 Si 0.97 42.87 29.54 68.60 2.03 44.90 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 26 H 0.07 2.86 7.71 -2.39 -0.02 2.85 16 27 H 0.09 3.58 6.68 -2.39 -0.02 3.56 16 28 H 0.09 1.29 7.72 -2.39 -0.02 1.27 16 29 H 0.08 1.54 5.93 -2.39 -0.01 1.52 16 30 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 0.82 7.83 -2.38 -0.02 0.80 16 33 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.04 1.17 6.56 -2.39 -0.02 1.15 16 36 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.23 5.62 4.87 -2.91 -0.01 5.61 16 38 H 0.05 2.61 7.64 -2.39 -0.02 2.59 16 39 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 Total: -1.00 -68.98 325.26 4.21 -64.77 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 1.04 Total: 14.32 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 5.26 Total: 1.64 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -4.06 Total: -102.41 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -68.98 4.21 -64.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889295547.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.101 kcal (2) G-P(sol) polarization free energy of solvation -68.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds