Wall clock time and date at job start Mon Mar 30 2020 02:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38041 * 126.29839 * 2 1 4 4 C 1.47436 * 126.41130 * 0.02562 * 3 2 1 5 5 O 1.21600 * 119.99869 * 352.04673 * 4 3 2 6 6 N 1.34779 * 119.99754 * 172.04343 * 4 3 2 7 7 C 1.47420 * 125.65078 * 1.34197 * 6 4 3 8 8 C 1.54911 * 104.83289 * 204.09175 * 7 6 4 9 9 C 1.55147 * 101.58199 * 322.99037 * 8 7 6 10 10 C 1.47022 * 125.64534 * 181.03812 * 6 4 3 11 11 H 1.08992 * 109.88348 * 59.55515 * 10 6 4 12 12 C 1.52998 * 109.87925 * 298.38983 * 10 6 4 13 13 C 1.41283 * 107.17358 * 180.25169 * 3 2 1 14 14 N 1.30449 * 108.02636 * 359.78286 * 13 3 2 15 15 N 1.34260 * 126.28558 * 179.88177 * 2 1 3 16 16 C 1.46496 * 125.75701 * 0.02562 * 15 2 1 17 17 C 1.50706 * 109.47112 * 269.72037 * 16 15 2 18 18 H 1.08001 * 119.99954 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99892 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00028 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99685 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46859 * 90.00031 * 21 19 17 23 23 H 1.48507 * 109.46841 * 209.99639 * 21 19 17 24 24 H 1.48493 * 109.47259 * 329.99798 * 21 19 17 25 25 H 1.09004 * 109.46569 * 270.15544 * 1 2 3 26 26 H 1.09007 * 109.46792 * 30.14560 * 1 2 3 27 27 H 1.08993 * 109.47865 * 150.14913 * 1 2 3 28 28 H 1.09003 * 110.36844 * 322.92983 * 7 6 4 29 29 H 1.08998 * 110.37073 * 85.24898 * 7 6 4 30 30 H 1.09006 * 111.00147 * 81.07006 * 8 7 6 31 31 H 1.09005 * 111.00264 * 204.91153 * 8 7 6 32 32 H 1.08995 * 110.72278 * 153.86448 * 9 8 7 33 33 H 1.08999 * 110.72091 * 277.14196 * 9 8 7 34 34 H 1.09002 * 109.47267 * 60.00154 * 12 10 6 35 35 H 1.09007 * 109.47247 * 180.02562 * 12 10 6 36 36 H 1.09003 * 109.47364 * 300.00499 * 12 10 6 37 37 H 1.08001 * 125.99133 * 179.80503 * 13 3 2 38 38 H 1.08998 * 109.47156 * 149.71930 * 16 15 2 39 39 H 1.08999 * 109.47526 * 29.71836 * 16 15 2 40 40 H 0.97002 * 119.99487 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1125 0.0000 4 6 1.8860 2.5203 0.0005 5 8 0.7094 2.7908 -0.1447 6 7 2.7895 3.5072 0.1620 7 6 4.2437 3.3235 0.3196 8 6 4.7254 4.5931 1.0650 9 6 3.8234 5.6861 0.4335 10 6 2.4888 4.9457 0.2040 11 1 1.8036 5.1574 1.0247 12 6 1.8677 5.3863 -1.1230 13 6 3.6590 0.6497 -0.0059 14 7 3.6340 -0.6546 -0.0045 15 7 2.3016 -1.0822 0.0022 16 6 1.8499 -2.4758 0.0046 17 6 1.7011 -2.9533 1.4262 18 1 1.9214 -2.2855 2.2460 19 6 1.2848 -4.2429 1.6803 20 7 1.0170 -5.0562 0.6821 21 14 1.1010 -4.8349 3.4425 22 1 -0.2797 -4.5605 3.9154 23 1 1.3644 -6.2951 3.5041 24 1 2.0723 -4.1197 4.3087 25 1 -0.3632 0.0028 1.0277 26 1 -0.3633 0.8887 -0.5161 27 1 -0.3634 -0.8912 -0.5115 28 1 4.4516 2.4332 0.9133 29 1 4.7248 3.2507 -0.6558 30 1 4.5453 4.5089 2.1368 31 1 5.7782 4.7898 0.8617 32 1 3.6904 6.5212 1.1213 33 1 4.2384 6.0283 -0.5145 34 1 0.9456 4.8310 -1.2948 35 1 1.6480 6.4533 -1.0848 36 1 2.5675 5.1886 -1.9351 37 1 4.5450 1.2673 -0.0104 38 1 2.5823 -3.0960 -0.5122 39 1 0.8890 -2.5473 -0.5051 40 1 0.7244 -5.9636 0.8609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889295548.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:12 Heat of formation + Delta-G solvation = 17.246356 kcal Electronic energy + Delta-G solvation = -21732.299142 eV Core-core repulsion = 18547.721409 eV Total energy + Delta-G solvation = -3184.577732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.41041 -40.69909 -38.28105 -35.85521 -34.07590 -33.08677 -32.34902 -32.09720 -29.12404 -28.21565 -26.86648 -25.48469 -24.34903 -22.36384 -22.18910 -20.72793 -19.73566 -18.88080 -18.06246 -17.48746 -16.90023 -16.45150 -16.27456 -15.97638 -15.17138 -15.02038 -14.70311 -14.33788 -14.30745 -14.25364 -13.82500 -13.66351 -13.54321 -13.50440 -13.12875 -13.07966 -12.97637 -12.70570 -12.48655 -12.32997 -11.88927 -11.80692 -11.72855 -11.64736 -11.52864 -10.77133 -10.71779 -10.28454 -9.74086 -9.36365 -8.39023 -6.55677 0.65597 1.30179 1.36868 1.37648 1.48018 1.63869 2.13207 2.31709 2.49587 2.93128 3.53804 3.70962 3.71728 3.84576 4.08196 4.10520 4.21189 4.27875 4.41742 4.43064 4.54694 4.58352 4.72075 4.74494 4.78787 4.87080 4.92491 5.03817 5.04440 5.11608 5.17038 5.19348 5.31011 5.44636 5.47555 5.56203 5.69870 5.73200 6.02549 6.53045 6.58833 6.80147 7.15477 7.30842 8.69040 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029843 B = 0.004116 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.011220 B = 6800.549869 C = 7054.192584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.144 3.856 3 C -0.329 4.329 4 C 0.614 3.386 5 O -0.583 6.583 6 N -0.614 5.614 7 C 0.075 3.925 8 C -0.126 4.126 9 C -0.117 4.117 10 C 0.126 3.874 11 H 0.060 0.940 12 C -0.157 4.157 13 C 0.064 3.936 14 N -0.335 5.335 15 N -0.337 5.337 16 C 0.267 3.733 17 C -0.556 4.556 18 H 0.051 0.949 19 C 0.024 3.976 20 N -0.917 5.917 21 Si 0.973 3.027 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.273 1.273 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.037 0.963 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.231 0.769 38 H 0.032 0.968 39 H 0.050 0.950 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.669 20.644 -0.587 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.008 3.992 3 C -0.344 4.344 4 C 0.405 3.595 5 O -0.465 6.465 6 N -0.347 5.347 7 C -0.047 4.047 8 C -0.163 4.163 9 C -0.155 4.155 10 C 0.024 3.976 11 H 0.078 0.922 12 C -0.215 4.215 13 C -0.122 4.122 14 N -0.155 5.155 15 N -0.114 5.114 16 C 0.148 3.852 17 C -0.594 4.594 18 H 0.069 0.931 19 C -0.177 4.177 20 N -0.555 5.555 21 Si 0.796 3.204 22 H -0.191 1.191 23 H -0.197 1.197 24 H -0.198 1.198 25 H 0.101 0.899 26 H 0.120 0.880 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.131 0.869 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.247 0.753 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.636 19.289 -0.735 20.412 hybrid contribution -0.796 -0.314 0.631 1.064 sum 5.840 18.975 -0.104 19.853 Atomic orbital electron populations 1.20560 0.85861 1.04129 1.03907 1.21937 0.95929 0.86675 0.94680 1.19932 0.93397 0.92971 1.28098 1.16830 0.84198 0.83330 0.75135 1.90644 1.18170 1.84306 1.53366 1.48329 1.08213 1.06056 1.72054 1.23014 0.79367 1.00637 1.01669 1.22813 1.01266 0.92468 0.99791 1.22727 0.92031 0.97790 1.02906 1.21746 0.98743 0.79213 0.97920 0.92191 1.22085 1.00683 1.02030 0.96677 1.25129 0.98058 0.91581 0.97431 1.77104 0.98331 1.14363 1.25665 1.49132 1.03399 1.07744 1.51102 1.19385 0.95287 0.72278 0.98247 1.21381 1.48070 0.98531 0.91458 0.93057 1.25736 0.93737 0.95863 1.02375 1.69999 1.44717 1.07614 1.33122 0.85333 0.78947 0.77684 0.78419 1.19140 1.19745 1.19810 0.89912 0.88031 0.90916 0.89850 0.89455 0.90764 0.86941 0.88310 0.88944 0.94380 0.89691 0.92241 0.75306 0.94982 0.93213 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.34 9.65 71.24 0.69 -2.65 16 2 C 0.14 6.20 7.00 42.14 0.30 6.49 16 3 C -0.33 -12.59 6.06 -20.15 -0.12 -12.71 16 4 C 0.61 21.56 7.64 86.67 0.66 22.22 16 5 O -0.58 -23.34 13.80 -4.03 -0.06 -23.40 16 6 N -0.61 -15.84 3.06 -791.87 -2.43 -18.26 16 7 C 0.07 1.33 5.26 86.86 0.46 1.79 16 8 C -0.13 -1.42 7.09 31.98 0.23 -1.20 16 9 C -0.12 -1.33 6.49 31.78 0.21 -1.12 16 10 C 0.13 2.58 3.46 45.35 0.16 2.74 16 11 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 12 C -0.16 -3.21 9.13 71.98 0.66 -2.55 16 13 C 0.06 2.26 10.29 85.65 0.88 3.14 16 14 N -0.33 -14.88 12.50 -56.28 -0.70 -15.58 16 15 N -0.34 -16.07 3.56 -336.70 -1.20 -17.26 16 16 C 0.27 14.06 5.97 85.64 0.51 14.57 16 17 C -0.56 -31.09 9.39 25.60 0.24 -30.85 16 18 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 19 C 0.02 1.32 5.46 84.65 0.46 1.79 16 20 N -0.92 -51.69 13.29 21.45 0.28 -51.40 16 21 Si 0.97 42.92 29.54 68.60 2.03 44.95 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 25 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 26 H 0.10 3.76 6.38 -2.38 -0.02 3.75 16 27 H 0.07 2.76 7.05 -2.39 -0.02 2.74 16 28 H 0.08 1.61 5.26 -2.39 -0.01 1.59 16 29 H 0.09 1.28 8.03 -2.39 -0.02 1.26 16 30 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.82 7.83 -2.39 -0.02 0.80 16 34 H 0.04 1.05 6.80 -2.39 -0.02 1.03 16 35 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 37 H 0.23 5.69 4.80 -2.91 -0.01 5.67 16 38 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.05 2.63 7.01 -2.39 -0.02 2.61 16 40 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -69.29 324.37 4.29 -65.00 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 1.04 Total: 14.32 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 5.32 Total: 1.64 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -4.04 Total: -102.51 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.06 Total: -23.40 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -69.29 4.29 -65.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889295548.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.244 kcal (2) G-P(sol) polarization free energy of solvation -69.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds