Wall clock time and date at job start Mon Mar 30 2020 02:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38038 * 126.29617 * 2 1 4 4 C 1.47430 * 126.41189 * 359.97438 * 3 2 1 5 5 O 1.21605 * 120.00387 * 0.02562 * 4 3 2 6 6 N 1.34784 * 120.00276 * 180.02562 * 4 3 2 7 7 C 1.46492 * 120.00160 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47155 * 175.11795 * 7 6 4 9 9 C 1.53002 * 115.54833 * 279.52549 * 8 7 6 10 10 C 1.53000 * 117.50066 * 133.81422 * 8 7 6 11 11 C 1.52997 * 117.49834 * 65.18846 * 8 7 6 12 12 C 1.41290 * 107.17474 * 179.97438 * 3 2 1 13 13 N 1.30452 * 108.01897 * 359.74250 * 12 3 2 14 14 N 1.34263 * 126.28748 * 179.97438 * 2 1 3 15 15 C 1.46500 * 125.75376 * 0.02562 * 14 2 1 16 16 C 1.50700 * 109.47060 * 89.99946 * 15 14 2 17 17 H 1.07996 * 120.00384 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99871 * 179.72117 * 16 15 14 19 19 N 1.31515 * 120.00018 * 0.27671 * 18 16 15 20 20 Si 1.86799 * 119.99827 * 180.27068 * 18 16 15 21 21 H 1.48503 * 109.47075 * 90.00589 * 20 18 16 22 22 H 1.48507 * 109.47141 * 210.00117 * 20 18 16 23 23 H 1.48497 * 109.47711 * 330.00340 * 20 18 16 24 24 H 1.08998 * 109.47207 * 270.02759 * 1 2 3 25 25 H 1.08997 * 109.47150 * 30.02523 * 1 2 3 26 26 H 1.08994 * 109.47181 * 150.02694 * 1 2 3 27 27 H 0.97000 * 119.99524 * 359.97438 * 6 4 3 28 28 H 1.08999 * 109.47341 * 295.11702 * 7 6 4 29 29 H 1.08999 * 109.47190 * 55.12338 * 7 6 4 30 30 H 1.08994 * 109.47155 * 64.03572 * 9 8 7 31 31 H 1.09001 * 109.46656 * 184.03930 * 9 8 7 32 32 H 1.09000 * 109.47342 * 304.03353 * 9 8 7 33 33 H 1.08998 * 117.49691 * 0.02562 * 10 8 7 34 34 H 1.08994 * 117.49610 * 145.02035 * 10 8 7 35 35 H 1.08997 * 117.50067 * 214.98092 * 11 8 7 36 36 H 1.09005 * 117.49766 * 0.02562 * 11 8 7 37 37 H 1.07999 * 125.98715 * 179.97438 * 12 3 2 38 38 H 1.08989 * 109.47337 * 329.99596 * 15 14 2 39 39 H 1.09000 * 109.46554 * 209.99292 * 15 14 2 40 40 H 0.96998 * 120.00274 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1125 0.0000 4 6 1.8859 2.5202 -0.0005 5 8 0.6997 2.7878 -0.0006 6 7 2.8000 3.5107 -0.0010 7 6 2.3646 4.9094 -0.0021 8 6 3.5853 5.8237 0.1204 9 6 4.1372 6.0014 1.5363 10 6 3.6675 7.0229 -0.8262 11 6 4.5895 5.8197 -1.0339 12 6 3.6591 0.6497 0.0006 13 7 3.6340 -0.6545 0.0065 14 7 2.3016 -1.0822 0.0005 15 6 1.8499 -2.4759 0.0006 16 6 1.6955 -2.9540 -1.4202 17 1 1.9118 -2.2864 -2.2411 18 6 1.2832 -4.2453 -1.6721 19 7 1.0194 -5.0581 -0.6724 20 14 1.0991 -4.8403 -3.4332 21 1 2.3838 -5.4248 -3.8950 22 1 0.0338 -5.8729 -3.4980 23 1 0.7334 -3.6963 -4.3066 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 3.7463 3.2973 -0.0006 28 1 1.8403 5.1260 -0.9328 29 1 1.6953 5.0822 0.8407 30 1 4.5047 5.0441 1.9058 31 1 4.9543 6.7226 1.5197 32 1 3.3456 6.3643 2.1919 33 1 2.8517 7.1608 -1.5358 34 1 4.1147 7.9389 -0.4402 35 1 5.6432 5.9442 -0.7847 36 1 4.3803 5.1660 -1.8808 37 1 4.5449 1.2675 0.0004 38 1 0.8912 -2.5470 0.5141 39 1 2.5844 -3.0957 0.5147 40 1 0.7289 -5.9665 -0.8495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889346122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:44 Heat of formation + Delta-G solvation = 41.736520 kcal Electronic energy + Delta-G solvation = -21005.028444 eV Core-core repulsion = 17821.512685 eV Total energy + Delta-G solvation = -3183.515759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.75870 -39.26267 -37.89308 -34.05035 -33.70218 -32.02940 -31.11671 -29.06077 -27.91540 -26.77512 -25.89969 -23.37464 -22.77363 -21.82374 -19.83953 -19.64944 -18.75509 -17.07485 -16.75641 -15.92656 -15.44911 -15.20952 -14.87337 -14.48184 -14.42640 -13.94538 -13.68583 -13.34529 -13.01230 -12.77041 -12.54787 -12.50249 -12.28318 -12.03707 -11.79637 -11.76175 -11.47450 -11.42402 -11.11203 -10.89175 -10.51329 -10.36800 -10.23215 -10.07871 -9.92875 -9.33046 -8.89720 -8.70896 -8.56400 -7.88622 -6.33293 -4.41268 2.22247 2.81886 3.10007 3.18727 3.25076 3.28919 3.42375 3.81533 3.95867 4.24752 4.38361 4.47276 4.68564 4.71201 5.00628 5.13187 5.28997 5.36296 5.37580 5.49590 5.55787 5.62541 5.68917 5.70317 5.79139 5.84188 5.86614 5.99000 6.00392 6.11976 6.48640 6.61064 6.68509 6.80670 6.91004 7.18278 7.56955 7.77760 7.78867 7.83043 8.39966 8.63853 8.67042 9.25762 10.74885 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031720 B = 0.003421 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.516114 B = 8182.646589 C = 8246.795915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.165 3.835 3 C -0.332 4.332 4 C 0.603 3.397 5 O -0.558 6.558 6 N -0.731 5.731 7 C 0.162 3.838 8 C -0.146 4.146 9 C -0.114 4.114 10 C -0.165 4.165 11 C -0.172 4.172 12 C 0.057 3.943 13 N -0.296 5.296 14 N -0.314 5.314 15 C 0.251 3.749 16 C -0.541 4.541 17 H 0.065 0.935 18 C 0.067 3.933 19 N -0.890 5.890 20 Si 0.908 3.092 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.271 1.271 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.398 0.602 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.175 0.825 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.902 19.589 2.310 20.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.028 3.972 3 C -0.348 4.348 4 C 0.393 3.607 5 O -0.438 6.438 6 N -0.383 5.383 7 C 0.038 3.962 8 C -0.146 4.146 9 C -0.171 4.171 10 C -0.203 4.203 11 C -0.210 4.210 12 C -0.130 4.130 13 N -0.116 5.116 14 N -0.091 5.091 15 C 0.134 3.866 16 C -0.579 4.579 17 H 0.084 0.916 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.735 3.265 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.196 1.196 24 H 0.095 0.905 25 H 0.114 0.886 26 H 0.101 0.899 27 H 0.232 0.768 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.192 0.808 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.667 18.325 2.377 19.059 hybrid contribution 0.092 0.178 -0.943 0.964 sum 4.759 18.503 1.434 19.159 Atomic orbital electron populations 1.20609 0.86873 1.04829 1.03250 1.21476 0.94961 0.86512 0.94259 1.19688 0.93134 0.92555 1.29394 1.17319 0.84996 0.83919 0.74472 1.90688 1.16761 1.84510 1.51809 1.45693 1.09811 1.05237 1.77584 1.20692 0.93791 0.79626 1.02089 1.21734 0.98869 1.00972 0.93033 1.21313 1.00475 1.01933 0.93352 1.23050 1.02688 0.92520 1.02007 1.23054 0.96386 1.01630 0.99882 1.23709 0.96336 0.92606 1.00332 1.77129 0.98661 1.12279 1.23554 1.49366 1.02470 1.08287 1.49009 1.19844 0.96407 0.70950 0.99412 1.21264 1.47553 0.98051 0.91043 0.91641 1.24928 0.94434 0.95991 0.98308 1.69913 1.44555 1.07103 1.31133 0.86320 0.78085 0.78642 0.83467 1.20250 1.20785 1.19571 0.90535 0.88632 0.89927 0.76771 0.91888 0.91021 0.91869 0.92461 0.91978 0.88541 0.88576 0.88560 0.88386 0.80842 0.92562 0.92518 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 9.34 36.01 0.34 -1.46 16 2 C 0.17 3.42 7.01 -81.60 -0.57 2.84 16 3 C -0.33 -6.17 6.13 -105.07 -0.64 -6.81 16 4 C 0.60 10.18 7.81 -12.51 -0.10 10.08 16 5 O -0.56 -10.85 14.84 5.27 0.08 -10.77 16 6 N -0.73 -9.17 5.51 -61.38 -0.34 -9.50 16 7 C 0.16 1.77 5.58 -4.04 -0.02 1.74 16 8 C -0.15 -1.19 2.13 -154.51 -0.33 -1.52 16 9 C -0.11 -0.83 9.72 37.16 0.36 -0.47 16 10 C -0.17 -1.18 9.87 -26.73 -0.26 -1.44 16 11 C -0.17 -1.29 9.85 -26.73 -0.26 -1.55 16 12 C 0.06 1.01 11.50 -16.98 -0.20 0.81 16 13 N -0.30 -6.42 12.50 30.86 0.39 -6.04 16 14 N -0.31 -7.18 3.56 -57.78 -0.21 -7.39 16 15 C 0.25 6.29 5.78 -5.19 -0.03 6.26 16 16 C -0.54 -14.64 9.39 -34.44 -0.32 -14.96 16 17 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 18 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 19 N -0.89 -24.67 13.29 55.43 0.74 -23.93 16 20 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 24 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.10 1.74 6.50 -51.93 -0.34 1.40 16 26 H 0.08 1.57 7.69 -51.93 -0.40 1.17 16 27 H 0.40 4.17 7.36 -40.82 -0.30 3.87 16 28 H 0.06 0.73 7.94 -51.93 -0.41 0.32 16 29 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.10 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.17 2.20 7.50 -52.49 -0.39 1.81 16 38 H 0.06 1.40 7.62 -51.94 -0.40 1.00 16 39 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 40 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -30.65 342.15 -7.35 -38.00 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.01 Total: 3.40 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -2.14 Total: -4.77 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.58 Total: -46.86 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.65 -7.35 -38.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889346122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.739 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds