Wall clock time and date at job start Mon Mar 30 2020 02:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38038 * 126.29617 * 2 1 4 4 C 1.47430 * 126.41189 * 359.97438 * 3 2 1 5 5 O 1.21605 * 120.00387 * 0.02562 * 4 3 2 6 6 N 1.34784 * 120.00276 * 180.02562 * 4 3 2 7 7 C 1.46492 * 120.00160 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47155 * 175.11795 * 7 6 4 9 9 C 1.53002 * 115.54833 * 279.52549 * 8 7 6 10 10 C 1.53000 * 117.50066 * 133.81422 * 8 7 6 11 11 C 1.52997 * 117.49834 * 65.18846 * 8 7 6 12 12 C 1.41290 * 107.17474 * 179.97438 * 3 2 1 13 13 N 1.30452 * 108.01897 * 359.74250 * 12 3 2 14 14 N 1.34263 * 126.28748 * 179.97438 * 2 1 3 15 15 C 1.46500 * 125.75376 * 0.02562 * 14 2 1 16 16 C 1.50700 * 109.47060 * 89.99946 * 15 14 2 17 17 H 1.07996 * 120.00384 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99871 * 179.72117 * 16 15 14 19 19 N 1.31515 * 120.00018 * 0.27671 * 18 16 15 20 20 Si 1.86799 * 119.99827 * 180.27068 * 18 16 15 21 21 H 1.48503 * 109.47075 * 90.00589 * 20 18 16 22 22 H 1.48507 * 109.47141 * 210.00117 * 20 18 16 23 23 H 1.48497 * 109.47711 * 330.00340 * 20 18 16 24 24 H 1.08998 * 109.47207 * 270.02759 * 1 2 3 25 25 H 1.08997 * 109.47150 * 30.02523 * 1 2 3 26 26 H 1.08994 * 109.47181 * 150.02694 * 1 2 3 27 27 H 0.97000 * 119.99524 * 359.97438 * 6 4 3 28 28 H 1.08999 * 109.47341 * 295.11702 * 7 6 4 29 29 H 1.08999 * 109.47190 * 55.12338 * 7 6 4 30 30 H 1.08994 * 109.47155 * 64.03572 * 9 8 7 31 31 H 1.09001 * 109.46656 * 184.03930 * 9 8 7 32 32 H 1.09000 * 109.47342 * 304.03353 * 9 8 7 33 33 H 1.08998 * 117.49691 * 0.02562 * 10 8 7 34 34 H 1.08994 * 117.49610 * 145.02035 * 10 8 7 35 35 H 1.08997 * 117.50067 * 214.98092 * 11 8 7 36 36 H 1.09005 * 117.49766 * 0.02562 * 11 8 7 37 37 H 1.07999 * 125.98715 * 179.97438 * 12 3 2 38 38 H 1.08989 * 109.47337 * 329.99596 * 15 14 2 39 39 H 1.09000 * 109.46554 * 209.99292 * 15 14 2 40 40 H 0.96998 * 120.00274 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1125 0.0000 4 6 1.8859 2.5202 -0.0005 5 8 0.6997 2.7878 -0.0006 6 7 2.8000 3.5107 -0.0010 7 6 2.3646 4.9094 -0.0021 8 6 3.5853 5.8237 0.1204 9 6 4.1372 6.0014 1.5363 10 6 3.6675 7.0229 -0.8262 11 6 4.5895 5.8197 -1.0339 12 6 3.6591 0.6497 0.0006 13 7 3.6340 -0.6545 0.0065 14 7 2.3016 -1.0822 0.0005 15 6 1.8499 -2.4759 0.0006 16 6 1.6955 -2.9540 -1.4202 17 1 1.9118 -2.2864 -2.2411 18 6 1.2832 -4.2453 -1.6721 19 7 1.0194 -5.0581 -0.6724 20 14 1.0991 -4.8403 -3.4332 21 1 2.3838 -5.4248 -3.8950 22 1 0.0338 -5.8729 -3.4980 23 1 0.7334 -3.6963 -4.3066 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 3.7463 3.2973 -0.0006 28 1 1.8403 5.1260 -0.9328 29 1 1.6953 5.0822 0.8407 30 1 4.5047 5.0441 1.9058 31 1 4.9543 6.7226 1.5197 32 1 3.3456 6.3643 2.1919 33 1 2.8517 7.1608 -1.5358 34 1 4.1147 7.9389 -0.4402 35 1 5.6432 5.9442 -0.7847 36 1 4.3803 5.1660 -1.8808 37 1 4.5449 1.2675 0.0004 38 1 0.8912 -2.5470 0.5141 39 1 2.5844 -3.0957 0.5147 40 1 0.7289 -5.9665 -0.8495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889346122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:43 Heat of formation + Delta-G solvation = 22.733179 kcal Electronic energy + Delta-G solvation = -21005.852491 eV Core-core repulsion = 17821.512685 eV Total energy + Delta-G solvation = -3184.339806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.30479 -40.35429 -38.84761 -35.83088 -35.02697 -33.75710 -32.73588 -29.90313 -29.24355 -28.40432 -27.09741 -25.25806 -23.53753 -23.04615 -21.19489 -20.85106 -19.92649 -18.86532 -18.35518 -17.04618 -16.72359 -16.53809 -16.30757 -15.96729 -15.65473 -15.28046 -14.90326 -14.48429 -14.32246 -14.09106 -13.88967 -13.63664 -13.59668 -13.53191 -13.09592 -13.03059 -12.95267 -12.72050 -12.32716 -12.31438 -12.15720 -11.85874 -11.72950 -11.13786 -10.95030 -10.76914 -10.55497 -10.25973 -10.07117 -9.42618 -8.38439 -6.55097 0.68752 1.32888 1.37293 1.38855 1.48874 1.65898 2.27965 2.33305 2.56098 2.93497 3.00294 3.70043 3.75194 3.78076 3.84732 4.04264 4.11123 4.14903 4.23836 4.54085 4.65358 4.69836 4.76513 4.80619 4.84842 4.90949 4.99724 5.01047 5.08777 5.09978 5.14595 5.17218 5.32258 5.40564 5.48364 5.55530 5.68579 5.74295 6.04762 6.54282 6.66147 6.85453 7.16195 7.38445 8.69495 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031720 B = 0.003421 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.516114 B = 8182.646589 C = 8246.795915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.145 3.855 3 C -0.331 4.331 4 C 0.603 3.397 5 O -0.586 6.586 6 N -0.710 5.710 7 C 0.161 3.839 8 C -0.150 4.150 9 C -0.112 4.112 10 C -0.159 4.159 11 C -0.169 4.169 12 C 0.080 3.920 13 N -0.336 5.336 14 N -0.339 5.339 15 C 0.267 3.733 16 C -0.557 4.557 17 H 0.052 0.948 18 C 0.024 3.976 19 N -0.917 5.917 20 Si 0.972 3.028 21 H -0.272 1.272 22 H -0.271 1.271 23 H -0.270 1.270 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.411 0.589 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.226 0.774 38 H 0.050 0.950 39 H 0.032 0.968 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.054 21.471 1.648 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.009 3.991 3 C -0.346 4.346 4 C 0.392 3.608 5 O -0.468 6.468 6 N -0.362 5.362 7 C 0.038 3.962 8 C -0.151 4.151 9 C -0.169 4.169 10 C -0.197 4.197 11 C -0.206 4.206 12 C -0.107 4.107 13 N -0.156 5.156 14 N -0.116 5.116 15 C 0.149 3.851 16 C -0.595 4.595 17 H 0.070 0.930 18 C -0.178 4.178 19 N -0.555 5.555 20 Si 0.796 3.204 21 H -0.198 1.198 22 H -0.196 1.196 23 H -0.194 1.194 24 H 0.109 0.891 25 H 0.116 0.884 26 H 0.088 0.912 27 H 0.247 0.753 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.242 0.758 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.851 20.243 1.723 21.142 hybrid contribution -0.228 -0.259 -0.702 0.782 sum 5.622 19.984 1.022 20.785 Atomic orbital electron populations 1.20575 0.85962 1.04197 1.04042 1.21970 0.95942 0.86751 0.94469 1.19970 0.93329 0.93066 1.28255 1.17155 0.85079 0.83906 0.74656 1.90676 1.18067 1.84776 1.53328 1.45546 1.09843 1.05250 1.75519 1.20776 0.95159 0.78882 1.01398 1.21621 0.98165 1.01283 0.94004 1.21313 1.00827 1.02221 0.92551 1.23142 1.02520 0.92788 1.01217 1.23106 0.97007 1.01526 0.98939 1.24483 0.97601 0.91581 0.97043 1.77085 0.98324 1.14419 1.25745 1.49107 1.03376 1.07731 1.51349 1.19360 0.95262 0.72365 0.98137 1.21405 1.48105 0.98409 0.91571 0.93011 1.25738 0.93776 0.95923 1.02322 1.69995 1.44860 1.07540 1.33070 0.85340 0.78366 0.78204 0.78519 1.19752 1.19580 1.19428 0.89069 0.88363 0.91182 0.75260 0.92524 0.91879 0.92154 0.90990 0.92244 0.88707 0.87072 0.87155 0.89070 0.75812 0.93221 0.95019 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.37 9.34 71.24 0.67 -2.70 16 2 C 0.14 6.03 7.01 42.14 0.30 6.32 16 3 C -0.33 -11.94 6.13 -20.15 -0.12 -12.06 16 4 C 0.60 19.56 7.81 86.66 0.68 20.24 16 5 O -0.59 -22.43 14.84 -4.05 -0.06 -22.49 16 6 N -0.71 -16.28 5.51 -466.37 -2.57 -18.84 16 7 C 0.16 3.24 5.58 86.38 0.48 3.72 16 8 C -0.15 -2.08 2.13 -52.18 -0.11 -2.19 16 9 C -0.11 -1.34 9.72 71.98 0.70 -0.64 16 10 C -0.16 -1.84 9.87 30.60 0.30 -1.54 16 11 C -0.17 -2.02 9.85 30.60 0.30 -1.71 16 12 C 0.08 2.66 11.50 85.65 0.99 3.64 16 13 N -0.34 -14.52 12.50 -56.27 -0.70 -15.22 16 14 N -0.34 -15.80 3.56 -336.72 -1.20 -17.00 16 15 C 0.27 13.94 5.78 85.63 0.50 14.43 16 16 C -0.56 -30.91 9.39 25.60 0.24 -30.67 16 17 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 18 C 0.02 1.29 5.46 84.66 0.46 1.76 16 19 N -0.92 -51.52 13.29 21.45 0.28 -51.24 16 20 Si 0.97 42.81 29.54 68.60 2.03 44.84 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 25 H 0.10 3.61 6.50 -2.39 -0.02 3.59 16 26 H 0.07 2.76 7.69 -2.39 -0.02 2.75 16 27 H 0.41 7.30 7.36 -92.71 -0.68 6.62 16 28 H 0.06 1.24 7.94 -2.39 -0.02 1.22 16 29 H 0.06 1.41 8.12 -2.39 -0.02 1.39 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.66 8.10 -2.39 -0.02 0.64 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 1.14 8.08 -2.39 -0.02 1.12 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.23 4.79 7.50 -2.91 -0.02 4.77 16 38 H 0.05 2.59 7.62 -2.39 -0.02 2.58 16 39 H 0.03 1.77 8.14 -2.39 -0.02 1.76 16 40 H 0.27 14.40 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -66.88 342.15 3.51 -63.37 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.36 Total: 17.99 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 5.37 Total: -1.40 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -4.19 Total: -102.30 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.06 Total: -22.49 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -66.88 3.51 -63.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889346122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.099 kcal (2) G-P(sol) polarization free energy of solvation -66.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds