Wall clock time and date at job start Mon Mar 30 2020 02:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 120.00117 * 2 1 4 4 C 1.53009 * 109.46996 * 124.99529 * 3 2 1 5 5 N 1.46499 * 109.46713 * 180.02562 * 4 3 2 6 6 C 1.46502 * 120.00095 * 270.00037 * 5 4 3 7 7 C 1.34773 * 120.00214 * 90.00147 * 5 4 3 8 8 O 1.21613 * 119.99927 * 3.92171 * 7 5 4 9 9 C 1.47425 * 120.00596 * 183.91533 * 7 5 4 10 10 C 1.41294 * 126.41308 * 328.09005 * 9 7 5 11 11 N 1.30452 * 108.02262 * 179.70042 * 10 9 7 12 12 N 1.39936 * 108.89578 * 0.40418 * 11 10 9 13 13 C 1.46502 * 125.75308 * 179.84866 * 12 11 10 14 14 C 1.50696 * 109.46951 * 269.69173 * 13 12 11 15 15 H 1.08001 * 120.00304 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00008 * 179.72412 * 14 13 12 17 17 N 1.31508 * 120.00422 * 180.27073 * 16 14 13 18 18 Si 1.86802 * 119.99733 * 0.27513 * 16 14 13 19 19 H 1.48506 * 109.47190 * 90.00066 * 18 16 14 20 20 H 1.48495 * 109.47247 * 209.99667 * 18 16 14 21 21 H 1.48498 * 109.47110 * 329.99917 * 18 16 14 22 22 C 1.34263 * 108.49245 * 359.58528 * 12 11 10 23 23 C 1.50697 * 126.29206 * 180.21999 * 22 12 11 24 24 H 1.07997 * 120.00057 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99758 * 180.02562 * 1 2 3 26 26 H 1.08006 * 120.00030 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46819 * 5.00306 * 3 2 1 28 28 H 1.08993 * 109.47317 * 244.99818 * 3 2 1 29 29 H 1.09001 * 109.46702 * 60.00706 * 4 3 2 30 30 H 1.08993 * 109.47324 * 300.00285 * 4 3 2 31 31 H 1.08998 * 109.47416 * 275.63764 * 6 5 4 32 32 H 1.08998 * 109.47070 * 35.63953 * 6 5 4 33 33 H 1.09004 * 109.47001 * 155.63543 * 6 5 4 34 34 H 1.07994 * 125.98948 * 359.91785 * 10 9 7 35 35 H 1.09004 * 109.46906 * 149.69032 * 13 12 11 36 36 H 1.08998 * 109.46672 * 29.69049 * 13 12 11 37 37 H 0.97006 * 120.00358 * 180.02562 * 17 16 14 38 38 H 1.09006 * 109.47156 * 89.99927 * 23 22 12 39 39 H 1.08994 * 109.47308 * 209.99655 * 23 22 12 40 40 H 1.08996 * 109.47307 * 330.00472 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1818 5 7 3.7671 2.6021 1.1821 6 6 5.0334 2.7174 0.4544 7 6 3.2757 3.6634 1.8517 8 8 2.2622 3.5484 2.5141 9 6 3.9666 4.9638 1.7815 10 6 5.3576 5.1680 1.6406 11 7 5.5759 6.4538 1.6118 12 7 4.3542 7.1239 1.7404 13 6 4.1728 8.5775 1.7570 14 6 4.2532 9.0776 3.1763 15 1 4.4221 8.3821 3.9851 16 6 4.1164 10.4236 3.4418 17 7 4.1919 10.8607 4.6798 18 14 3.8236 11.6264 2.0429 19 1 2.3636 11.7762 1.8162 20 1 4.4078 12.9457 2.3940 21 1 4.4665 11.1136 0.8064 22 6 3.3757 6.2100 1.8402 23 6 1.9030 6.4927 1.9893 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4026 -0.9313 29 1 3.7400 0.5066 1.0921 30 1 2.4772 1.2356 2.1131 31 1 5.8477 2.3564 1.0826 32 1 4.9848 2.1204 -0.4562 33 1 5.2098 3.7614 0.1954 34 1 6.1081 4.3950 1.5660 35 1 3.1976 8.8268 1.3386 36 1 4.9549 9.0480 1.1611 37 1 4.0952 11.8077 4.8667 38 1 1.4442 6.5603 1.0028 39 1 1.4337 5.6870 2.5538 40 1 1.7658 7.4354 2.5190 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890130599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:54 Heat of formation + Delta-G solvation = 60.472632 kcal Electronic energy + Delta-G solvation = -21288.746845 eV Core-core repulsion = 18106.043545 eV Total energy + Delta-G solvation = -3182.703300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.96976 -39.12766 -36.15613 -34.66002 -33.81068 -32.19145 -31.39356 -29.84819 -27.71893 -27.04719 -26.38982 -23.91485 -22.85776 -21.23534 -20.00019 -19.71283 -18.46637 -17.22462 -16.86550 -15.96615 -15.70723 -15.52132 -14.84118 -14.63374 -14.28715 -13.90054 -13.67132 -13.33610 -13.01650 -12.88483 -12.63463 -12.48018 -12.39728 -12.23079 -12.19746 -11.85503 -11.56579 -11.25714 -11.17348 -11.03926 -10.85863 -10.40409 -10.23949 -9.79398 -9.63232 -9.41794 -8.85216 -8.65405 -8.54132 -7.93546 -6.32576 -4.37493 2.06912 2.17386 2.72995 3.02794 3.10579 3.17489 3.19079 3.34042 3.70087 4.15505 4.67782 4.85546 4.91967 4.98324 5.09739 5.13616 5.19128 5.20178 5.38667 5.44271 5.49866 5.64185 5.69716 5.73163 5.81576 5.89096 5.94264 5.99425 6.25814 6.43207 6.43780 6.46679 6.58356 6.59029 6.65291 7.02825 7.18602 7.55547 7.57474 8.20395 8.28007 8.53024 8.71738 9.21087 10.79662 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030997 B = 0.003781 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.085268 B = 7403.402898 C = 7778.886496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.152 4.152 3 C -0.110 4.110 4 C 0.123 3.877 5 N -0.619 5.619 6 C 0.068 3.932 7 C 0.604 3.396 8 O -0.548 6.548 9 C -0.326 4.326 10 C 0.054 3.946 11 N -0.293 5.293 12 N -0.313 5.313 13 C 0.225 3.775 14 C -0.546 4.546 15 H 0.082 0.918 16 C 0.081 3.919 17 N -0.882 5.882 18 Si 0.873 3.127 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.263 1.263 22 C 0.162 3.838 23 C -0.104 4.104 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.183 0.817 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.270 0.730 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.654 -17.640 -11.613 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.171 4.171 3 C -0.148 4.148 4 C 0.001 3.999 5 N -0.353 5.353 6 C -0.075 4.075 7 C 0.395 3.605 8 O -0.426 6.426 9 C -0.341 4.341 10 C -0.132 4.132 11 N -0.113 5.113 12 N -0.090 5.090 13 C 0.106 3.894 14 C -0.584 4.584 15 H 0.100 0.900 16 C -0.124 4.124 17 N -0.519 5.519 18 Si 0.698 3.302 19 H -0.195 1.195 20 H -0.204 1.204 21 H -0.188 1.188 22 C 0.026 3.974 23 C -0.162 4.162 24 H 0.115 0.885 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.200 0.800 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.275 -16.402 -11.224 20.005 hybrid contribution -0.491 0.056 -0.532 0.726 sum -2.766 -16.346 -11.757 20.324 Atomic orbital electron populations 1.23889 0.96052 1.01870 1.00948 1.22839 0.96037 0.98079 1.00118 1.21137 0.98810 0.95865 0.99028 1.21310 0.94403 0.84929 0.99307 1.47615 1.23721 1.11562 1.52378 1.22177 0.85118 1.04220 0.95997 1.17413 0.83066 0.82540 0.77463 1.90702 1.26107 1.84334 1.41458 1.19636 0.93890 0.92365 1.28252 1.24018 0.94761 0.94248 1.00187 1.77155 1.04782 1.05744 1.23658 1.48888 1.02667 1.07993 1.49420 1.20139 0.98238 0.70688 1.00292 1.21113 1.52522 0.94257 0.90551 0.89976 1.24797 0.94047 0.97731 0.95787 1.69864 1.47936 1.15493 1.18585 0.86904 0.79284 0.81335 0.82639 1.19506 1.20370 1.18788 1.21370 0.93061 0.88209 0.94754 1.20653 0.87619 1.05015 1.02943 0.88487 0.88587 0.87393 0.90964 0.91046 0.90809 0.89657 0.92656 0.91855 0.89120 0.79987 0.93496 0.92728 0.91963 0.90797 0.88377 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.64 14.32 29.01 0.42 -1.23 16 2 C -0.15 -1.31 9.52 -36.02 -0.34 -1.65 16 3 C -0.11 -1.09 5.98 -27.88 -0.17 -1.25 16 4 C 0.12 1.32 5.45 -4.04 -0.02 1.29 16 5 N -0.62 -7.87 2.87 -182.85 -0.53 -8.39 16 6 C 0.07 0.65 9.09 59.85 0.54 1.19 16 7 C 0.60 10.22 7.52 -12.52 -0.09 10.12 16 8 O -0.55 -10.73 14.89 5.27 0.08 -10.66 16 9 C -0.33 -5.96 5.54 -105.07 -0.58 -6.54 16 10 C 0.05 0.93 9.57 -16.98 -0.16 0.77 16 11 N -0.29 -6.18 12.50 30.86 0.39 -5.80 16 12 N -0.31 -6.91 3.56 -57.77 -0.21 -7.11 16 13 C 0.23 5.23 4.85 -5.19 -0.03 5.21 16 14 C -0.55 -15.04 9.94 -34.44 -0.34 -15.38 16 15 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 16 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 17 N -0.88 -25.95 13.96 55.43 0.77 -25.18 16 18 Si 0.87 19.72 27.47 -169.99 -4.67 15.05 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 22 C 0.16 3.25 7.00 -81.60 -0.57 2.68 16 23 C -0.10 -1.83 9.66 36.00 0.35 -1.48 16 24 H 0.10 0.88 7.84 -52.49 -0.41 0.47 16 25 H 0.10 0.68 8.06 -52.49 -0.42 0.26 16 26 H 0.11 0.75 8.06 -52.48 -0.42 0.32 16 27 H 0.07 0.87 7.79 -51.93 -0.40 0.46 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 30 H 0.09 1.07 7.37 -51.93 -0.38 0.69 16 31 H 0.05 0.44 7.86 -51.93 -0.41 0.04 16 32 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 33 H 0.09 0.97 4.71 -51.93 -0.24 0.73 16 34 H 0.18 2.35 6.11 -52.49 -0.32 2.03 16 35 H 0.05 1.00 7.06 -51.93 -0.37 0.63 16 36 H 0.05 1.27 7.19 -51.93 -0.37 0.90 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.10 1.74 6.50 -51.93 -0.34 1.41 16 40 H 0.09 1.61 7.70 -51.93 -0.40 1.21 16 LS Contribution 334.99 15.07 5.05 5.05 Total: -1.00 -32.43 334.99 -5.99 -38.42 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.77 Total: 2.75 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -1.10 Total: -4.13 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.43 Total: -46.48 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.67 Total: 15.05 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.43 -5.99 -38.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890130599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.888 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds