Wall clock time and date at job start Mon Mar 30 2020 02:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 120.00117 * 2 1 4 4 C 1.53009 * 109.46996 * 124.99529 * 3 2 1 5 5 N 1.46499 * 109.46713 * 180.02562 * 4 3 2 6 6 C 1.46502 * 120.00095 * 270.00037 * 5 4 3 7 7 C 1.34773 * 120.00214 * 90.00147 * 5 4 3 8 8 O 1.21613 * 119.99927 * 3.92171 * 7 5 4 9 9 C 1.47425 * 120.00596 * 183.91533 * 7 5 4 10 10 C 1.41294 * 126.41308 * 328.09005 * 9 7 5 11 11 N 1.30452 * 108.02262 * 179.70042 * 10 9 7 12 12 N 1.39936 * 108.89578 * 0.40418 * 11 10 9 13 13 C 1.46502 * 125.75308 * 179.84866 * 12 11 10 14 14 C 1.50696 * 109.46951 * 269.69173 * 13 12 11 15 15 H 1.08001 * 120.00304 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00008 * 179.72412 * 14 13 12 17 17 N 1.31508 * 120.00422 * 180.27073 * 16 14 13 18 18 Si 1.86802 * 119.99733 * 0.27513 * 16 14 13 19 19 H 1.48506 * 109.47190 * 90.00066 * 18 16 14 20 20 H 1.48495 * 109.47247 * 209.99667 * 18 16 14 21 21 H 1.48498 * 109.47110 * 329.99917 * 18 16 14 22 22 C 1.34263 * 108.49245 * 359.58528 * 12 11 10 23 23 C 1.50697 * 126.29206 * 180.21999 * 22 12 11 24 24 H 1.07997 * 120.00057 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99758 * 180.02562 * 1 2 3 26 26 H 1.08006 * 120.00030 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46819 * 5.00306 * 3 2 1 28 28 H 1.08993 * 109.47317 * 244.99818 * 3 2 1 29 29 H 1.09001 * 109.46702 * 60.00706 * 4 3 2 30 30 H 1.08993 * 109.47324 * 300.00285 * 4 3 2 31 31 H 1.08998 * 109.47416 * 275.63764 * 6 5 4 32 32 H 1.08998 * 109.47070 * 35.63953 * 6 5 4 33 33 H 1.09004 * 109.47001 * 155.63543 * 6 5 4 34 34 H 1.07994 * 125.98948 * 359.91785 * 10 9 7 35 35 H 1.09004 * 109.46906 * 149.69032 * 13 12 11 36 36 H 1.08998 * 109.46672 * 29.69049 * 13 12 11 37 37 H 0.97006 * 120.00358 * 180.02562 * 17 16 14 38 38 H 1.09006 * 109.47156 * 89.99927 * 23 22 12 39 39 H 1.08994 * 109.47308 * 209.99655 * 23 22 12 40 40 H 1.08996 * 109.47307 * 330.00472 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1818 5 7 3.7671 2.6021 1.1821 6 6 5.0334 2.7174 0.4544 7 6 3.2757 3.6634 1.8517 8 8 2.2622 3.5484 2.5141 9 6 3.9666 4.9638 1.7815 10 6 5.3576 5.1680 1.6406 11 7 5.5759 6.4538 1.6118 12 7 4.3542 7.1239 1.7404 13 6 4.1728 8.5775 1.7570 14 6 4.2532 9.0776 3.1763 15 1 4.4221 8.3821 3.9851 16 6 4.1164 10.4236 3.4418 17 7 4.1919 10.8607 4.6798 18 14 3.8236 11.6264 2.0429 19 1 2.3636 11.7762 1.8162 20 1 4.4078 12.9457 2.3940 21 1 4.4665 11.1136 0.8064 22 6 3.3757 6.2100 1.8402 23 6 1.9030 6.4927 1.9893 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4026 -0.9313 29 1 3.7400 0.5066 1.0921 30 1 2.4772 1.2356 2.1131 31 1 5.8477 2.3564 1.0826 32 1 4.9848 2.1204 -0.4562 33 1 5.2098 3.7614 0.1954 34 1 6.1081 4.3950 1.5660 35 1 3.1976 8.8268 1.3386 36 1 4.9549 9.0480 1.1611 37 1 4.0952 11.8077 4.8667 38 1 1.4442 6.5603 1.0028 39 1 1.4337 5.6870 2.5538 40 1 1.7658 7.4354 2.5190 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890130599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:54 Heat of formation + Delta-G solvation = 39.193800 kcal Electronic energy + Delta-G solvation = -21289.669565 eV Core-core repulsion = 18106.043545 eV Total energy + Delta-G solvation = -3183.626020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.43601 -40.36610 -37.18751 -35.90628 -35.32811 -33.96310 -32.91009 -30.89574 -29.34678 -28.34384 -27.44433 -25.29662 -24.36473 -22.55997 -21.14747 -20.68140 -19.83056 -19.29031 -18.19725 -17.11040 -16.98471 -16.62847 -16.35706 -15.88189 -15.72773 -15.17206 -14.97643 -14.56224 -14.34163 -14.21112 -13.96991 -13.77782 -13.67402 -13.58241 -13.30270 -13.09108 -12.99663 -12.65460 -12.58182 -12.14174 -11.95876 -11.86710 -11.85558 -11.76193 -10.92796 -10.80596 -10.33052 -10.22794 -9.64492 -9.36967 -8.43778 -6.56455 0.67406 1.30794 1.33394 1.35230 1.40900 1.45527 1.64137 2.12763 2.24284 2.38549 2.88420 3.65320 3.70203 3.95217 4.05310 4.12148 4.20872 4.31016 4.38842 4.43937 4.47230 4.52642 4.59082 4.63578 4.73327 4.78118 4.94466 5.00027 5.02744 5.08036 5.10605 5.17274 5.18682 5.57826 5.70796 5.76931 5.82533 5.93723 6.20624 6.42914 6.47112 6.77252 7.07655 7.27670 8.72959 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030997 B = 0.003781 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.085268 B = 7403.402898 C = 7778.886496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.104 4.104 4 C 0.122 3.878 5 N -0.609 5.609 6 C 0.060 3.940 7 C 0.600 3.400 8 O -0.585 6.585 9 C -0.328 4.328 10 C 0.076 3.924 11 N -0.332 5.332 12 N -0.338 5.338 13 C 0.235 3.765 14 C -0.556 4.556 15 H 0.023 0.977 16 C 0.022 3.978 17 N -0.936 5.936 18 Si 0.952 3.048 19 H -0.252 1.252 20 H -0.277 1.277 21 H -0.240 1.240 22 C 0.142 3.858 23 C -0.098 4.098 24 H 0.084 0.916 25 H 0.113 0.887 26 H 0.133 0.867 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.227 0.773 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.275 0.725 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 -19.287 -14.469 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.171 4.171 3 C -0.143 4.143 4 C 0.000 4.000 5 N -0.341 5.341 6 C -0.082 4.082 7 C 0.390 3.610 8 O -0.466 6.466 9 C -0.343 4.343 10 C -0.110 4.110 11 N -0.152 5.152 12 N -0.115 5.115 13 C 0.115 3.885 14 C -0.594 4.594 15 H 0.041 0.959 16 C -0.178 4.178 17 N -0.574 5.574 18 Si 0.772 3.228 19 H -0.176 1.176 20 H -0.203 1.203 21 H -0.164 1.164 22 C 0.007 3.993 23 C -0.156 4.156 24 H 0.102 0.898 25 H 0.131 0.869 26 H 0.150 0.850 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.129 0.871 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.243 0.757 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.110 0.890 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.796 -18.107 -14.113 23.028 hybrid contribution -0.593 0.363 0.421 0.812 sum -2.389 -17.745 -13.692 22.540 Atomic orbital electron populations 1.24024 0.96443 1.02142 1.01178 1.22960 0.96013 0.98288 0.99832 1.21058 0.98256 0.95677 0.99275 1.21490 0.95150 0.84823 0.98577 1.47682 1.24497 1.10963 1.50909 1.22429 0.84031 1.04265 0.97476 1.17331 0.82703 0.83064 0.77910 1.90685 1.27624 1.84932 1.43375 1.19940 0.94466 0.92645 1.27274 1.24709 0.95239 0.93840 0.97247 1.77096 1.05000 1.07390 1.25724 1.48749 1.03484 1.07669 1.51581 1.19884 0.99387 0.71959 0.97255 1.21213 1.52758 0.93855 0.91574 0.95865 1.25861 0.93173 0.99830 0.98953 1.70032 1.49498 1.16309 1.21577 0.85665 0.80245 0.77768 0.79085 1.17601 1.20259 1.16368 1.21889 0.93788 0.88839 0.94796 1.20639 0.86741 1.03874 1.04311 0.89805 0.86923 0.84961 0.93899 0.89561 0.87052 0.91963 0.90282 0.88700 0.90347 0.75684 0.91125 0.92390 0.91620 0.87915 0.88959 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.20 14.32 67.78 0.97 -2.23 16 2 C -0.15 -2.26 9.52 25.65 0.24 -2.02 16 3 C -0.10 -1.85 5.98 29.85 0.18 -1.67 16 4 C 0.12 2.29 5.45 86.38 0.47 2.76 16 5 N -0.61 -14.00 2.87 -850.65 -2.44 -16.45 16 6 C 0.06 0.90 9.09 127.77 1.16 2.06 16 7 C 0.60 19.86 7.52 86.66 0.65 20.51 16 8 O -0.58 -23.24 14.89 -4.07 -0.06 -23.30 16 9 C -0.33 -11.83 5.54 -20.15 -0.11 -11.94 16 10 C 0.08 2.52 9.57 85.65 0.82 3.34 16 11 N -0.33 -13.96 12.50 -56.27 -0.70 -14.66 16 12 N -0.34 -15.07 3.56 -336.70 -1.20 -16.27 16 13 C 0.23 10.95 4.85 85.63 0.42 11.36 16 14 C -0.56 -31.82 9.94 25.60 0.25 -31.57 16 15 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 16 C 0.02 1.23 5.47 84.66 0.46 1.69 16 17 N -0.94 -57.11 13.96 21.45 0.30 -56.81 16 18 Si 0.95 40.38 27.47 68.60 1.88 42.27 16 19 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 20 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.24 -9.26 6.54 99.48 0.65 -8.61 16 22 C 0.14 5.74 7.00 42.14 0.29 6.04 16 23 C -0.10 -3.48 9.66 71.24 0.69 -2.80 16 24 H 0.08 1.53 7.84 -2.91 -0.02 1.50 16 25 H 0.11 1.38 8.06 -2.91 -0.02 1.36 16 26 H 0.13 1.34 8.06 -2.91 -0.02 1.31 16 27 H 0.04 1.01 7.79 -2.39 -0.02 0.99 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.11 1.30 8.07 -2.39 -0.02 1.28 16 30 H 0.06 1.50 7.37 -2.39 -0.02 1.48 16 31 H 0.08 0.88 7.86 -2.39 -0.02 0.86 16 32 H 0.09 0.90 8.11 -2.39 -0.02 0.88 16 33 H 0.08 1.42 4.71 -2.38 -0.01 1.41 16 34 H 0.23 5.11 6.11 -2.91 -0.02 5.10 16 35 H 0.07 2.93 7.06 -2.39 -0.02 2.91 16 36 H 0.06 2.64 7.19 -2.39 -0.02 2.63 16 37 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 38 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 39 H 0.09 3.39 6.50 -2.39 -0.02 3.38 16 40 H 0.07 2.79 7.70 -2.39 -0.02 2.77 16 Total: -1.00 -75.50 334.99 5.25 -70.26 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.97 Total: 19.43 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 6.50 Total: -4.46 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -4.05 Total: -104.19 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.06 Total: -23.30 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.88 Total: 42.27 kcal Total: -75.50 5.25 -70.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890130599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.450 kcal (2) G-P(sol) polarization free energy of solvation -75.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds