Wall clock time and date at job start Mon Mar 30 2020 02:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50699 * 119.99916 * 2 1 4 4 C 1.30998 * 120.00095 * 180.02562 * 2 1 3 5 5 C 1.50700 * 119.99965 * 353.78566 * 4 2 1 6 6 N 1.46494 * 109.47120 * 236.01756 * 5 4 2 7 7 C 1.34779 * 120.00087 * 180.02562 * 6 5 4 8 8 O 1.21612 * 119.99872 * 359.72670 * 7 6 5 9 9 C 1.47423 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.41293 * 126.41512 * 359.40855 * 9 7 6 11 11 N 1.30446 * 108.02018 * 179.87811 * 10 9 7 12 12 N 1.39933 * 108.89986 * 0.38902 * 11 10 9 13 13 C 1.46503 * 125.75489 * 179.74628 * 12 11 10 14 14 C 1.50699 * 109.47267 * 270.00314 * 13 12 11 15 15 H 1.07997 * 119.99954 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99825 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00212 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99950 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.46997 * 89.99551 * 18 16 14 20 20 H 1.48500 * 109.46833 * 209.99467 * 18 16 14 21 21 H 1.48491 * 109.46828 * 329.99499 * 18 16 14 22 22 C 1.34262 * 108.49354 * 359.74833 * 12 11 10 23 23 C 1.50696 * 126.29449 * 179.97438 * 22 12 11 24 24 H 1.08997 * 109.46902 * 265.04012 * 1 2 3 25 25 H 1.09002 * 109.47140 * 25.04407 * 1 2 3 26 26 H 1.08997 * 109.47012 * 145.03593 * 1 2 3 27 27 H 1.08995 * 109.47455 * 269.99803 * 3 2 1 28 28 H 1.09004 * 109.47596 * 30.00086 * 3 2 1 29 29 H 1.09001 * 109.46935 * 149.99710 * 3 2 1 30 30 H 1.08007 * 119.99759 * 173.78449 * 4 2 1 31 31 H 1.09004 * 109.46698 * 116.01745 * 5 4 2 32 32 H 1.08998 * 109.47249 * 356.02291 * 5 4 2 33 33 H 0.96994 * 120.00197 * 359.97438 * 6 5 4 34 34 H 1.07996 * 125.98427 * 0.04532 * 10 9 7 35 35 H 1.09000 * 109.46995 * 30.00258 * 13 12 11 36 36 H 1.09000 * 109.46736 * 149.99878 * 13 12 11 37 37 H 0.97000 * 120.00025 * 180.02562 * 17 16 14 38 38 H 1.08994 * 109.47488 * 270.00843 * 23 22 12 39 39 H 1.09007 * 109.46754 * 30.00466 * 23 22 12 40 40 H 1.08998 * 109.46840 * 149.99654 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4152 -2.4358 0.1402 6 7 1.9471 -3.1831 1.2824 7 6 1.4288 -4.3857 1.6013 8 8 0.5161 -4.8481 0.9440 9 6 1.9637 -5.1374 2.7511 10 6 3.0190 -4.7338 3.5996 11 7 3.1946 -5.6648 4.4962 12 7 2.2797 -6.6975 4.2624 13 6 2.1588 -7.9281 5.0481 14 6 3.0559 -8.9881 4.4627 15 1 3.6558 -8.7673 3.5922 16 6 3.1100 -10.2400 5.0378 17 7 2.3791 -10.5090 6.0975 18 14 4.2226 -11.5537 4.3126 19 1 5.5615 -11.4754 4.9500 20 1 3.6334 -12.8939 4.5614 21 1 4.3573 -11.3359 2.8499 22 6 1.5314 -6.3704 3.1967 23 6 0.4237 -7.1975 2.5969 24 1 -0.3633 -0.0888 1.0238 25 1 -0.3633 0.9311 -0.4350 26 1 -0.3633 -0.8422 -0.5889 27 1 2.4422 1.6198 -1.0276 28 1 1.6714 2.0648 0.5139 29 1 3.2129 1.1748 0.5139 30 1 3.2373 -1.1371 -0.1018 31 1 1.5378 -3.0251 -0.7686 32 1 0.3566 -2.2317 0.3007 33 1 2.6728 -2.8128 1.8087 34 1 3.5799 -3.8142 3.5211 35 1 2.4534 -7.7315 6.0789 36 1 1.1252 -8.2736 5.0252 37 1 2.4174 -11.3897 6.5023 38 1 0.8357 -7.8581 1.8341 39 1 -0.0480 -7.7941 3.3778 40 1 -0.3179 -6.5387 2.1452 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890172302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:56 Heat of formation + Delta-G solvation = 12.611516 kcal Electronic energy + Delta-G solvation = -20681.375368 eV Core-core repulsion = 17496.596654 eV Total energy + Delta-G solvation = -3184.778714 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.30404 -40.16224 -37.83415 -35.82906 -35.10930 -33.78785 -32.74797 -30.33583 -28.94251 -28.58970 -28.03943 -25.57611 -24.73853 -23.14855 -21.26406 -20.65397 -19.07237 -18.85008 -18.11729 -17.04928 -16.79113 -16.54709 -16.21576 -15.96488 -15.43442 -15.04521 -14.85066 -14.80400 -14.30910 -14.25685 -14.04980 -13.68791 -13.57845 -13.33746 -13.21015 -13.08447 -12.96852 -12.77492 -12.70533 -12.39542 -12.31437 -11.85932 -11.78966 -11.71168 -10.86417 -10.76592 -10.26858 -10.14173 -9.65239 -9.40205 -8.38283 -6.54733 0.68474 1.07043 1.32848 1.37262 1.38796 1.48956 1.68666 2.32124 2.55118 2.59088 2.93943 3.74831 3.75674 3.85357 4.07613 4.14160 4.24383 4.35010 4.51311 4.51661 4.61660 4.69515 4.74234 4.80258 4.86268 4.89832 4.97073 5.01153 5.07821 5.15708 5.17680 5.23672 5.48399 5.52884 5.68258 5.73962 5.74450 5.98177 6.04509 6.54302 6.66620 6.85348 7.16374 7.38193 8.69676 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036804 B = 0.003127 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.612379 B = 8953.309398 C = 9085.951902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.102 4.102 3 C -0.120 4.120 4 C -0.197 4.197 5 C 0.150 3.850 6 N -0.711 5.711 7 C 0.603 3.397 8 O -0.586 6.586 9 C -0.331 4.331 10 C 0.080 3.920 11 N -0.336 5.336 12 N -0.339 5.339 13 C 0.267 3.733 14 C -0.556 4.556 15 H 0.051 0.949 16 C 0.024 3.976 17 N -0.917 5.917 18 Si 0.972 3.028 19 H -0.272 1.272 20 H -0.271 1.271 21 H -0.270 1.270 22 C 0.144 3.856 23 C -0.086 4.086 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.128 0.872 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.412 0.588 34 H 0.227 0.773 35 H 0.032 0.968 36 H 0.051 0.949 37 H 0.275 0.725 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.318 20.307 -11.328 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.103 4.103 3 C -0.176 4.176 4 C -0.215 4.215 5 C 0.028 3.972 6 N -0.362 5.362 7 C 0.392 3.608 8 O -0.468 6.468 9 C -0.347 4.347 10 C -0.107 4.107 11 N -0.156 5.156 12 N -0.116 5.116 13 C 0.148 3.852 14 C -0.594 4.594 15 H 0.070 0.930 16 C -0.178 4.178 17 N -0.555 5.555 18 Si 0.796 3.204 19 H -0.198 1.198 20 H -0.196 1.196 21 H -0.194 1.194 22 C 0.008 3.992 23 C -0.144 4.144 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.145 0.855 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.248 0.752 34 H 0.243 0.757 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.330 19.360 -10.517 22.072 hybrid contribution 0.425 -0.640 -0.374 0.854 sum -0.905 18.720 -10.891 21.677 Atomic orbital electron populations 1.21012 0.92216 1.03118 1.02459 1.21967 0.96252 0.95623 0.96507 1.20912 0.99920 0.93868 1.02922 1.22578 1.00445 0.92155 1.06308 1.20321 0.97786 0.90781 0.88340 1.45561 1.39405 1.18487 1.32777 1.17161 0.81029 0.80626 0.81995 1.90674 1.31606 1.70143 1.54359 1.19966 1.08797 0.99287 1.06601 1.24504 0.95765 0.99029 0.91410 1.77085 1.14139 0.98417 1.25955 1.49110 1.23887 1.16112 1.22456 1.19372 0.98282 0.76893 0.90624 1.21393 1.26603 0.96842 1.14557 0.93028 1.25736 0.96898 1.00225 0.94918 1.69995 1.40355 1.23603 1.21521 0.85341 0.78574 0.77775 0.78752 1.19763 1.19567 1.19440 1.21973 0.94104 0.94825 0.88250 1.20546 0.94498 0.98832 1.00502 0.91343 0.90322 0.91810 0.90530 0.90795 0.91114 0.85452 0.92241 0.91289 0.75181 0.75709 0.95025 0.93156 0.91635 0.89940 0.91018 0.88022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 8.93 71.24 0.64 -1.06 16 2 C -0.10 -1.35 6.05 -16.49 -0.10 -1.45 16 3 C -0.12 -1.10 10.00 71.24 0.71 -0.38 16 4 C -0.20 -2.94 9.21 25.65 0.24 -2.70 16 5 C 0.15 3.11 5.74 85.63 0.49 3.60 16 6 N -0.71 -16.68 5.54 -470.11 -2.60 -19.29 16 7 C 0.60 19.76 7.81 86.66 0.68 20.44 16 8 O -0.59 -22.50 14.84 -4.07 -0.06 -22.56 16 9 C -0.33 -12.03 6.13 -20.15 -0.12 -12.16 16 10 C 0.08 2.67 11.50 85.65 0.99 3.66 16 11 N -0.34 -14.59 12.50 -56.28 -0.70 -15.30 16 12 N -0.34 -15.86 3.56 -336.69 -1.20 -17.06 16 13 C 0.27 13.94 5.97 85.63 0.51 14.45 16 14 C -0.56 -30.91 9.39 25.60 0.24 -30.67 16 15 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 16 C 0.02 1.28 5.46 84.65 0.46 1.75 16 17 N -0.92 -51.57 13.29 21.45 0.28 -51.29 16 18 Si 0.97 42.89 29.54 68.60 2.03 44.92 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 C 0.14 6.04 7.01 42.14 0.30 6.34 16 23 C -0.09 -3.23 9.57 71.23 0.68 -2.54 16 24 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 26 H 0.06 0.91 6.65 -2.39 -0.02 0.90 16 27 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.58 8.12 -2.38 -0.02 0.56 16 29 H 0.07 0.59 8.06 -2.39 -0.02 0.57 16 30 H 0.13 1.60 8.05 -2.91 -0.02 1.58 16 31 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.07 1.51 5.71 -2.39 -0.01 1.50 16 33 H 0.41 7.34 7.42 -92.71 -0.69 6.65 16 34 H 0.23 4.83 7.50 -2.91 -0.02 4.81 16 35 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.05 2.63 7.02 -2.39 -0.02 2.61 16 37 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 38 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.07 2.65 7.05 -2.38 -0.02 2.64 16 40 H 0.10 3.62 6.50 -2.39 -0.02 3.60 16 Total: -1.00 -67.53 340.36 3.81 -63.71 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.36 Total: 17.59 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 5.71 Total: -0.73 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -4.22 Total: -102.93 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.06 Total: -22.56 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -67.53 3.81 -63.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890172302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.326 kcal (2) G-P(sol) polarization free energy of solvation -67.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds