Wall clock time and date at job start Mon Mar 30 2020 02:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00262 * 2 1 4 4 C 1.52996 * 109.47006 * 124.99786 * 3 2 1 5 5 C 1.53002 * 109.46736 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.47041 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99968 * 179.97438 * 6 5 4 8 8 O 1.21602 * 119.99987 * 359.73127 * 7 6 5 9 9 C 1.47436 * 119.99867 * 180.02562 * 7 6 5 10 10 C 1.41286 * 126.41299 * 359.41281 * 9 7 6 11 11 N 1.30448 * 108.02337 * 179.87788 * 10 9 7 12 12 N 1.39938 * 108.89467 * 0.38911 * 11 10 9 13 13 C 1.46503 * 125.75356 * 179.75148 * 12 11 10 14 14 C 1.50696 * 109.46974 * 269.99715 * 13 12 11 15 15 H 1.08001 * 120.00163 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99873 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99984 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00024 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47063 * 90.00165 * 18 16 14 20 20 H 1.48501 * 109.47045 * 210.00089 * 18 16 14 21 21 H 1.48501 * 109.46990 * 330.00178 * 18 16 14 22 22 C 1.34259 * 108.48882 * 359.74809 * 12 11 10 23 23 C 1.50699 * 126.28729 * 179.97438 * 22 12 11 24 24 H 1.08001 * 120.00723 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.99871 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99581 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.46701 * 4.99497 * 3 2 1 28 28 H 1.09001 * 109.46944 * 244.99646 * 3 2 1 29 29 H 1.08999 * 109.46983 * 60.00567 * 4 3 2 30 30 H 1.08993 * 109.47310 * 300.00007 * 4 3 2 31 31 H 1.09004 * 109.47178 * 60.00488 * 5 4 3 32 32 H 1.08993 * 109.47411 * 300.00171 * 5 4 3 33 33 H 0.97004 * 120.00014 * 0.02562 * 6 5 4 34 34 H 1.08000 * 125.99145 * 0.03887 * 10 9 7 35 35 H 1.09004 * 109.46911 * 29.99927 * 13 12 11 36 36 H 1.09002 * 109.46643 * 149.99548 * 13 12 11 37 37 H 0.96997 * 120.00146 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.47568 * 269.99949 * 23 22 12 39 39 H 1.09002 * 109.47528 * 29.99975 * 23 22 12 40 40 H 1.08998 * 109.46953 * 150.00240 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.8005 2.6578 1.1812 6 7 4.7303 2.6848 2.3130 7 6 5.5158 3.7613 2.5142 8 8 5.4563 4.7081 1.7534 9 6 6.4520 3.7883 3.6529 10 6 6.6278 2.7719 4.6183 11 7 7.5448 3.1669 5.4579 12 7 7.9865 4.4400 5.0806 13 6 9.0079 5.2312 5.7712 14 6 8.3523 6.0921 6.8200 15 1 7.2818 6.0541 6.9580 16 6 9.1191 6.9284 7.6033 17 7 10.4226 6.9751 7.4350 18 14 8.3064 7.9962 8.9029 19 1 8.2482 7.2540 10.1878 20 1 9.0957 9.2407 9.0854 21 1 6.9293 8.3426 8.4685 22 6 7.3164 4.8139 3.9789 23 6 7.4779 6.1147 3.2353 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6214 1.4025 -0.9314 29 1 3.7399 0.5065 1.0920 30 1 2.4772 1.2356 2.1130 31 1 3.0958 3.4846 1.2706 32 1 4.3583 2.7548 0.2499 33 1 4.7811 1.9276 2.9172 34 1 6.0980 1.8314 4.6535 35 1 9.7256 4.5625 6.2466 36 1 9.5244 5.8657 5.0510 37 1 10.9620 7.5636 7.9858 38 1 6.7891 6.8545 3.6433 39 1 8.5018 6.4718 3.3459 40 1 7.2596 5.9588 2.1789 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890309094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:59 Heat of formation + Delta-G solvation = 30.441567 kcal Electronic energy + Delta-G solvation = -20436.466155 eV Core-core repulsion = 17252.460610 eV Total energy + Delta-G solvation = -3184.005545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76002 -38.84203 -36.58352 -34.43495 -33.85990 -32.13231 -31.38991 -30.83617 -27.65418 -26.71839 -25.66769 -23.42005 -22.18139 -21.69778 -20.20522 -19.68787 -18.94081 -17.04230 -16.74529 -16.17356 -15.72774 -15.17778 -15.04864 -14.60332 -14.44494 -14.02127 -13.80891 -13.54356 -13.07765 -12.82424 -12.59520 -12.41362 -12.08435 -12.01455 -11.94787 -11.76087 -11.45883 -11.17902 -11.12643 -11.07125 -10.88356 -10.36681 -10.17072 -9.93001 -9.69987 -9.36239 -8.92699 -8.70748 -8.57586 -7.89346 -6.33248 -4.40988 1.94046 2.21424 2.81136 3.18515 3.19937 3.25033 3.31050 3.60377 3.95050 4.24683 4.44976 4.64202 4.87754 4.98799 5.00542 5.03805 5.16418 5.29563 5.33982 5.42968 5.55638 5.57425 5.69190 5.78068 5.88985 5.91682 6.01511 6.14611 6.28960 6.42864 6.44004 6.57138 6.66125 6.81218 6.91550 7.17265 7.56721 7.76568 7.77836 7.81155 8.39108 8.63203 8.65908 9.25832 10.74968 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034342 B = 0.002867 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.142073 B = 9765.053231 C = 9835.204862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.092 4.092 4 C -0.127 4.127 5 C 0.123 3.877 6 N -0.736 5.736 7 C 0.603 3.397 8 O -0.557 6.557 9 C -0.333 4.333 10 C 0.057 3.943 11 N -0.296 5.296 12 N -0.314 5.314 13 C 0.251 3.749 14 C -0.539 4.539 15 H 0.065 0.935 16 C 0.067 3.933 17 N -0.890 5.890 18 Si 0.908 3.092 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.271 1.271 22 C 0.165 3.835 23 C -0.092 4.092 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.398 0.602 34 H 0.175 0.825 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.269 0.731 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.462 -10.893 -12.655 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.170 4.170 3 C -0.130 4.130 4 C -0.165 4.165 5 C -0.001 4.001 6 N -0.389 5.389 7 C 0.393 3.607 8 O -0.437 6.437 9 C -0.349 4.349 10 C -0.130 4.130 11 N -0.116 5.116 12 N -0.091 5.091 13 C 0.134 3.866 14 C -0.578 4.578 15 H 0.083 0.917 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.735 3.265 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.196 1.196 22 C 0.028 3.972 23 C -0.151 4.151 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.232 0.768 34 H 0.192 0.808 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.513 -10.347 -11.977 20.176 hybrid contribution -0.814 0.235 0.492 0.980 sum -13.328 -10.112 -11.485 20.292 Atomic orbital electron populations 1.23875 0.96026 1.01862 1.01574 1.22960 0.96028 0.98500 0.99531 1.20680 0.98121 0.95591 0.98614 1.21743 0.98215 0.97368 0.99174 1.21254 0.91827 0.97299 0.89697 1.45723 1.41814 1.20282 1.31037 1.17314 0.78697 0.81409 0.83266 1.90687 1.69308 1.35863 1.47802 1.19689 1.10944 0.99253 1.04991 1.23712 0.97292 0.98970 0.92999 1.77133 1.15602 0.95980 1.22908 1.49365 1.29470 1.11901 1.18374 1.19854 0.84391 0.89625 0.92756 1.21245 0.94620 1.23470 1.18439 0.91676 1.24927 0.94820 0.96680 0.97272 1.69912 1.04481 1.38387 1.39935 0.86318 0.79416 0.79470 0.81294 1.20251 1.20783 1.19598 1.21481 0.91436 0.95985 0.88341 1.20567 1.03015 0.91217 1.00258 0.88607 0.88561 0.87380 0.91133 0.90587 0.91101 0.91117 0.91763 0.91718 0.76844 0.80789 0.92521 0.92547 0.92115 0.89849 0.90888 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.26 14.32 29.02 0.42 -0.84 16 2 C -0.15 -1.00 9.52 -36.02 -0.34 -1.34 16 3 C -0.09 -0.62 5.66 -27.88 -0.16 -0.78 16 4 C -0.13 -0.92 5.31 -26.73 -0.14 -1.06 16 5 C 0.12 1.26 5.67 -4.04 -0.02 1.24 16 6 N -0.74 -9.03 5.55 -61.38 -0.34 -9.37 16 7 C 0.60 10.14 7.81 -12.52 -0.10 10.04 16 8 O -0.56 -10.80 14.84 5.28 0.08 -10.73 16 9 C -0.33 -6.16 6.13 -105.07 -0.64 -6.80 16 10 C 0.06 1.00 11.50 -16.98 -0.20 0.80 16 11 N -0.30 -6.41 12.50 30.86 0.39 -6.02 16 12 N -0.31 -7.17 3.56 -57.77 -0.21 -7.37 16 13 C 0.25 6.28 5.97 -5.19 -0.03 6.25 16 14 C -0.54 -14.61 9.39 -34.44 -0.32 -14.93 16 15 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 16 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -24.67 13.29 55.43 0.74 -23.93 16 18 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C 0.16 3.40 7.01 -81.61 -0.57 2.83 16 23 C -0.09 -1.70 9.57 36.01 0.34 -1.36 16 24 H 0.10 0.52 8.06 -52.49 -0.42 0.10 16 25 H 0.10 0.58 7.84 -52.49 -0.41 0.17 16 26 H 0.11 0.63 8.06 -52.49 -0.42 0.21 16 27 H 0.07 0.47 7.79 -51.93 -0.40 0.07 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.40 3.88 7.43 -40.82 -0.30 3.58 16 34 H 0.18 2.16 7.50 -52.49 -0.39 1.76 16 35 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.06 1.40 7.02 -51.93 -0.36 1.04 16 37 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.07 1.30 7.05 -51.93 -0.37 0.93 16 40 H 0.09 1.64 6.50 -51.93 -0.34 1.31 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -31.11 344.26 -6.98 -38.09 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.93 Total: 2.52 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.87 Total: -4.24 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.58 Total: -46.70 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.11 -6.98 -38.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890309094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.529 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds