Wall clock time and date at job start Mon Mar 30 2020 02:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00262 * 2 1 4 4 C 1.52996 * 109.47006 * 124.99786 * 3 2 1 5 5 C 1.53002 * 109.46736 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.47041 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99968 * 179.97438 * 6 5 4 8 8 O 1.21602 * 119.99987 * 359.73127 * 7 6 5 9 9 C 1.47436 * 119.99867 * 180.02562 * 7 6 5 10 10 C 1.41286 * 126.41299 * 359.41281 * 9 7 6 11 11 N 1.30448 * 108.02337 * 179.87788 * 10 9 7 12 12 N 1.39938 * 108.89467 * 0.38911 * 11 10 9 13 13 C 1.46503 * 125.75356 * 179.75148 * 12 11 10 14 14 C 1.50696 * 109.46974 * 269.99715 * 13 12 11 15 15 H 1.08001 * 120.00163 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99873 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99984 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00024 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47063 * 90.00165 * 18 16 14 20 20 H 1.48501 * 109.47045 * 210.00089 * 18 16 14 21 21 H 1.48501 * 109.46990 * 330.00178 * 18 16 14 22 22 C 1.34259 * 108.48882 * 359.74809 * 12 11 10 23 23 C 1.50699 * 126.28729 * 179.97438 * 22 12 11 24 24 H 1.08001 * 120.00723 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.99871 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99581 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.46701 * 4.99497 * 3 2 1 28 28 H 1.09001 * 109.46944 * 244.99646 * 3 2 1 29 29 H 1.08999 * 109.46983 * 60.00567 * 4 3 2 30 30 H 1.08993 * 109.47310 * 300.00007 * 4 3 2 31 31 H 1.09004 * 109.47178 * 60.00488 * 5 4 3 32 32 H 1.08993 * 109.47411 * 300.00171 * 5 4 3 33 33 H 0.97004 * 120.00014 * 0.02562 * 6 5 4 34 34 H 1.08000 * 125.99145 * 0.03887 * 10 9 7 35 35 H 1.09004 * 109.46911 * 29.99927 * 13 12 11 36 36 H 1.09002 * 109.46643 * 149.99548 * 13 12 11 37 37 H 0.96997 * 120.00146 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.47568 * 269.99949 * 23 22 12 39 39 H 1.09002 * 109.47528 * 29.99975 * 23 22 12 40 40 H 1.08998 * 109.46953 * 150.00240 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.8005 2.6578 1.1812 6 7 4.7303 2.6848 2.3130 7 6 5.5158 3.7613 2.5142 8 8 5.4563 4.7081 1.7534 9 6 6.4520 3.7883 3.6529 10 6 6.6278 2.7719 4.6183 11 7 7.5448 3.1669 5.4579 12 7 7.9865 4.4400 5.0806 13 6 9.0079 5.2312 5.7712 14 6 8.3523 6.0921 6.8200 15 1 7.2818 6.0541 6.9580 16 6 9.1191 6.9284 7.6033 17 7 10.4226 6.9751 7.4350 18 14 8.3064 7.9962 8.9029 19 1 8.2482 7.2540 10.1878 20 1 9.0957 9.2407 9.0854 21 1 6.9293 8.3426 8.4685 22 6 7.3164 4.8139 3.9789 23 6 7.4779 6.1147 3.2353 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6214 1.4025 -0.9314 29 1 3.7399 0.5065 1.0920 30 1 2.4772 1.2356 2.1130 31 1 3.0958 3.4846 1.2706 32 1 4.3583 2.7548 0.2499 33 1 4.7811 1.9276 2.9172 34 1 6.0980 1.8314 4.6535 35 1 9.7256 4.5625 6.2466 36 1 9.5244 5.8657 5.0510 37 1 10.9620 7.5636 7.9858 38 1 6.7891 6.8545 3.6433 39 1 8.5018 6.4718 3.3459 40 1 7.2596 5.9588 2.1789 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890309094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:59 Heat of formation + Delta-G solvation = 10.986474 kcal Electronic energy + Delta-G solvation = -20437.309791 eV Core-core repulsion = 17252.460610 eV Total energy + Delta-G solvation = -3184.849181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.29763 -40.12133 -37.32138 -35.82776 -35.31882 -33.83782 -32.78956 -31.87675 -29.26733 -28.29183 -26.64902 -25.25925 -23.37457 -22.61370 -21.29623 -20.54230 -20.43739 -18.86420 -18.38083 -16.99762 -16.84647 -16.69429 -16.33109 -16.09741 -15.69441 -15.30070 -14.99746 -14.61265 -14.24187 -14.19563 -14.03758 -13.70695 -13.60917 -13.52605 -13.08498 -12.96782 -12.71790 -12.69390 -12.56058 -12.31431 -11.85889 -11.75613 -11.71869 -11.64008 -10.80256 -10.76429 -10.26357 -10.15671 -10.06347 -9.41991 -8.38193 -6.54576 0.69112 1.33517 1.37215 1.38991 1.45484 1.48879 1.67059 2.31782 2.43102 2.56874 2.93907 3.75058 3.76749 3.86650 4.08279 4.14562 4.23980 4.30997 4.43529 4.49285 4.56094 4.63710 4.71508 4.78186 4.81367 4.89449 4.99501 5.06989 5.11058 5.18235 5.26906 5.36281 5.48631 5.57958 5.69472 5.74572 5.82811 5.95616 6.04762 6.54389 6.66946 6.86013 7.16425 7.39739 8.69690 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034342 B = 0.002867 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.142073 B = 9765.053231 C = 9835.204862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.092 4.092 4 C -0.115 4.115 5 C 0.122 3.878 6 N -0.716 5.716 7 C 0.602 3.398 8 O -0.587 6.587 9 C -0.332 4.332 10 C 0.080 3.920 11 N -0.337 5.337 12 N -0.339 5.339 13 C 0.267 3.733 14 C -0.555 4.555 15 H 0.051 0.949 16 C 0.023 3.977 17 N -0.916 5.916 18 Si 0.972 3.028 19 H -0.272 1.272 20 H -0.271 1.271 21 H -0.270 1.270 22 C 0.143 3.857 23 C -0.086 4.086 24 H 0.104 0.896 25 H 0.096 0.904 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.413 0.587 34 H 0.228 0.772 35 H 0.032 0.968 36 H 0.050 0.950 37 H 0.274 0.726 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.246 -12.042 -12.902 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.176 4.176 3 C -0.130 4.130 4 C -0.153 4.153 5 C -0.001 4.001 6 N -0.368 5.368 7 C 0.391 3.609 8 O -0.468 6.468 9 C -0.347 4.347 10 C -0.107 4.107 11 N -0.157 5.157 12 N -0.116 5.116 13 C 0.148 3.852 14 C -0.593 4.593 15 H 0.069 0.931 16 C -0.179 4.179 17 N -0.554 5.554 18 Si 0.796 3.204 19 H -0.198 1.198 20 H -0.196 1.196 21 H -0.195 1.195 22 C 0.007 3.993 23 C -0.144 4.144 24 H 0.122 0.878 25 H 0.114 0.886 26 H 0.135 0.865 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.249 0.751 34 H 0.244 0.756 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.321 -11.541 -12.236 22.091 hybrid contribution -0.345 0.492 0.464 0.760 sum -14.666 -11.049 -11.771 21.812 Atomic orbital electron populations 1.24023 0.96202 1.02357 1.01274 1.23036 0.96148 0.98661 0.99784 1.20667 0.98016 0.95763 0.98511 1.21654 0.98167 0.95755 0.99695 1.21395 0.91302 0.98884 0.88547 1.45587 1.40521 1.19242 1.31440 1.17158 0.79006 0.82178 0.82534 1.90675 1.70285 1.37285 1.48597 1.19989 1.10442 0.98739 1.05534 1.24521 0.95326 1.00019 0.90800 1.77088 1.17685 0.95917 1.24992 1.49104 1.30334 1.12704 1.19428 1.19371 0.84596 0.88987 0.92241 1.21384 0.94045 1.24371 1.19513 0.93051 1.25741 0.95341 0.97691 0.99078 1.69994 1.05603 1.39024 1.40821 0.85340 0.78484 0.78027 0.78573 1.19757 1.19591 1.19460 1.21979 0.91906 0.97319 0.88067 1.20541 1.02855 0.90541 1.00426 0.87791 0.88553 0.86546 0.91374 0.90320 0.89860 0.90555 0.92614 0.92146 0.75061 0.75561 0.95023 0.93180 0.91647 0.89984 0.91062 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.19 14.32 67.79 0.97 -1.22 16 2 C -0.16 -1.72 9.52 25.65 0.24 -1.47 16 3 C -0.09 -1.02 5.66 29.85 0.17 -0.85 16 4 C -0.11 -1.32 5.31 30.59 0.16 -1.16 16 5 C 0.12 2.22 5.67 86.38 0.49 2.71 16 6 N -0.72 -15.58 5.55 -466.36 -2.59 -18.16 16 7 C 0.60 19.23 7.81 86.67 0.68 19.91 16 8 O -0.59 -22.21 14.84 -4.04 -0.06 -22.27 16 9 C -0.33 -11.84 6.13 -20.15 -0.12 -11.97 16 10 C 0.08 2.63 11.50 85.65 0.99 3.61 16 11 N -0.34 -14.48 12.50 -56.28 -0.70 -15.19 16 12 N -0.34 -15.75 3.56 -336.70 -1.20 -16.95 16 13 C 0.27 13.87 5.97 85.63 0.51 14.39 16 14 C -0.56 -30.76 9.39 25.60 0.24 -30.52 16 15 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 16 C 0.02 1.24 5.46 84.65 0.46 1.70 16 17 N -0.92 -51.44 13.29 21.45 0.28 -51.16 16 18 Si 0.97 42.81 29.54 68.60 2.03 44.84 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 C 0.14 5.95 7.01 42.14 0.30 6.24 16 23 C -0.09 -3.20 9.57 71.24 0.68 -2.52 16 24 H 0.10 0.93 8.06 -2.91 -0.02 0.91 16 25 H 0.10 1.02 7.84 -2.91 -0.02 0.99 16 26 H 0.12 1.06 8.06 -2.91 -0.02 1.03 16 27 H 0.07 0.79 7.79 -2.39 -0.02 0.77 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.41 6.46 7.43 -92.71 -0.69 5.77 16 34 H 0.23 4.62 7.50 -2.91 -0.02 4.60 16 35 H 0.03 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.05 2.61 7.02 -2.39 -0.02 2.59 16 37 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.07 2.63 7.05 -2.39 -0.02 2.61 16 40 H 0.10 3.59 6.50 -2.39 -0.02 3.58 16 Total: -1.00 -67.81 344.26 3.87 -63.94 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.34 Total: 16.12 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 5.77 Total: -1.16 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -4.21 Total: -101.46 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.06 Total: -22.27 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -67.81 3.87 -63.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890309094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.923 kcal (2) G-P(sol) polarization free energy of solvation -67.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds