Wall clock time and date at job start Mon Mar 30 2020 02:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31979 * 120.04647 * 2 1 4 4 C 1.32222 * 120.07414 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.16975 * 359.97438 * 4 3 2 6 6 N 1.32181 * 120.09113 * 0.02562 * 5 4 3 7 7 C 1.32634 * 119.92337 * 359.97438 * 6 5 4 8 8 N 1.39403 * 120.08367 * 180.02562 * 7 6 5 9 9 C 1.46503 * 120.00010 * 265.23028 * 8 7 6 10 10 C 1.34777 * 120.00260 * 85.22638 * 8 7 6 11 11 O 1.21276 * 119.99522 * 0.02562 * 10 8 7 12 12 C 1.50697 * 120.00271 * 180.02562 * 10 8 7 13 13 C 1.53002 * 109.47376 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47248 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46898 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.46999 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00305 * 0.02562 * 16 15 14 18 18 C 1.37889 * 120.00119 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99707 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99923 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47242 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46843 * 120.00336 * 20 18 16 23 23 H 1.48499 * 109.46980 * 239.99861 * 20 18 16 24 24 H 1.08997 * 109.47149 * 274.92248 * 1 2 3 25 25 H 1.08994 * 109.47053 * 34.92633 * 1 2 3 26 26 H 1.08999 * 109.46756 * 154.92865 * 1 2 3 27 27 H 1.08007 * 119.91361 * 180.02562 * 4 3 2 28 28 H 1.07998 * 119.95634 * 180.27609 * 5 4 3 29 29 H 1.09001 * 109.47717 * 95.24807 * 9 8 7 30 30 H 1.09009 * 109.47208 * 215.24757 * 9 8 7 31 31 H 1.09004 * 109.47102 * 335.24447 * 9 8 7 32 32 H 1.09005 * 109.46695 * 299.99741 * 12 10 8 33 33 H 1.08996 * 109.47503 * 59.99381 * 12 10 8 34 34 H 1.09000 * 109.46962 * 300.00354 * 13 12 10 35 35 H 1.09004 * 109.46998 * 59.99606 * 13 12 10 36 36 H 1.09001 * 109.47004 * 299.99458 * 14 13 12 37 37 H 1.08991 * 109.47472 * 60.00138 * 14 13 12 38 38 H 1.08997 * 109.47415 * 300.00037 * 15 14 13 39 39 H 1.09004 * 109.47159 * 59.99943 * 15 14 13 40 40 H 0.96996 * 119.99512 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1424 0.0000 4 6 3.4900 1.1431 0.0005 5 6 4.1854 -0.0519 0.0016 6 7 3.5303 -1.1999 0.0016 7 6 2.2040 -1.2048 0.0011 8 7 1.5097 -2.4136 0.0016 9 6 1.0538 -2.9971 -1.2625 10 6 1.2578 -3.0456 1.1651 11 8 1.6348 -2.5624 2.2115 12 6 0.5077 -4.3527 1.1656 13 6 0.3577 -4.8540 2.6033 14 6 -0.4044 -6.1807 2.6039 15 6 -0.5539 -6.6824 4.0416 16 6 -1.3050 -7.9888 4.0422 17 1 -1.6418 -8.4186 3.1104 18 6 -1.5615 -8.6360 5.2324 19 7 -1.1510 -8.1129 6.3671 20 14 -2.4920 -10.2558 5.2331 21 1 -2.8400 -10.6274 3.8381 22 1 -1.6399 -11.3158 5.8294 23 1 -3.7352 -10.1121 6.0324 24 1 -0.3633 0.0882 1.0238 25 1 -0.3633 0.8425 -0.5883 26 1 -0.3633 -0.9308 -0.4355 27 1 4.0282 2.0795 0.0009 28 1 5.2654 -0.0473 0.0065 29 1 1.7879 -3.7224 -1.6137 30 1 0.0963 -3.4948 -1.1086 31 1 0.9380 -2.2084 -2.0059 32 1 -0.4792 -4.2053 0.7269 33 1 1.0592 -5.0884 0.5803 34 1 1.3447 -5.0013 3.0416 35 1 -0.1937 -4.1184 3.1890 36 1 -1.3915 -6.0329 2.1659 37 1 0.1465 -6.9165 2.0183 38 1 0.4333 -6.8302 4.4793 39 1 -1.1047 -5.9467 4.6277 40 1 -1.3312 -8.5684 7.2043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893282980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:33 Heat of formation + Delta-G solvation = 1.404508 kcal Electronic energy + Delta-G solvation = -20768.852760 eV Core-core repulsion = 17583.588074 eV Total energy + Delta-G solvation = -3185.264686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.72779 -39.75872 -36.18430 -34.95556 -34.82003 -32.78862 -32.13928 -29.76690 -28.52884 -27.10819 -26.09425 -24.37392 -23.23240 -22.23798 -20.12021 -19.71880 -18.31170 -17.63656 -16.90402 -16.39308 -16.14813 -15.80463 -15.09310 -14.89936 -14.43418 -14.35371 -13.75850 -13.38760 -13.17280 -13.09133 -12.91700 -12.60319 -12.54780 -12.24676 -11.89185 -11.70196 -11.62213 -11.36240 -11.00324 -10.55950 -10.49053 -10.42492 -10.11062 -9.88279 -9.62001 -9.42978 -9.22292 -8.98784 -8.92343 -8.30553 -5.95104 -3.97570 0.35923 0.78960 2.36973 2.53769 3.27141 3.33329 3.40546 3.44321 3.74481 4.00724 4.13600 4.48591 4.55528 4.65730 4.77972 4.80063 4.94990 5.04184 5.22791 5.24973 5.29785 5.34639 5.36420 5.40459 5.62599 5.76675 5.79458 6.10881 6.24696 6.34554 6.52710 6.81952 6.93259 6.96849 7.03399 7.20142 7.43663 7.74569 7.89983 8.02843 8.06518 8.47929 9.10426 9.66131 11.16298 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040179 B = 0.002781 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.716428 B =10064.237654 C =10194.070417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.099 3.901 3 N -0.434 5.434 4 C 0.052 3.948 5 C 0.057 3.943 6 N -0.435 5.435 7 C 0.308 3.692 8 N -0.575 5.575 9 C 0.082 3.918 10 C 0.523 3.477 11 O -0.517 6.517 12 C -0.132 4.132 13 C -0.105 4.105 14 C -0.109 4.109 15 C 0.019 3.981 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.174 0.826 28 H 0.173 0.827 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.663 17.609 -19.214 26.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.045 4.045 3 N -0.150 5.150 4 C -0.107 4.107 5 C -0.104 4.104 6 N -0.151 5.151 7 C 0.079 3.921 8 N -0.310 5.310 9 C -0.060 4.060 10 C 0.313 3.687 11 O -0.390 6.390 12 C -0.172 4.172 13 C -0.143 4.143 14 C -0.147 4.147 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.191 0.809 28 H 0.190 0.810 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.859 17.796 -18.437 26.526 hybrid contribution -0.179 -0.898 0.038 0.916 sum 6.680 16.898 -18.398 25.859 Atomic orbital electron populations 1.20708 0.87313 1.03767 1.04151 1.22402 0.98712 0.88227 0.95121 1.68314 1.09050 1.28327 1.09310 1.23803 0.90694 1.00071 0.96145 1.23661 1.01882 0.87709 0.97156 1.68083 1.08697 1.30726 1.07615 1.18906 0.88118 0.87074 0.98019 1.45372 1.55937 1.21037 1.08664 1.21939 1.00921 0.99131 0.84013 1.21373 0.78984 0.86453 0.81891 1.90734 1.50884 1.66443 1.30924 1.21846 1.00485 0.92481 1.02350 1.21501 1.01947 0.98583 0.92290 1.21640 0.98023 0.93701 1.01312 1.19101 0.97055 0.95675 0.89956 1.21316 1.35566 1.06284 0.92607 0.92679 1.25052 0.96065 0.97769 0.95734 1.69986 1.46756 1.39106 0.97607 0.86557 0.79650 0.83905 0.77999 1.19768 1.21063 1.21052 0.89501 0.89865 0.90178 0.80872 0.81008 0.91601 0.89408 0.90937 0.88616 0.88617 0.91736 0.91708 0.93367 0.93387 0.96592 0.96585 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 10.03 36.01 0.36 -0.56 16 2 C 0.10 1.14 6.81 -82.18 -0.56 0.58 16 3 N -0.43 -4.85 10.42 -9.13 -0.10 -4.94 16 4 C 0.05 0.45 11.21 -17.38 -0.19 0.26 16 5 C 0.06 0.53 11.22 -17.39 -0.20 0.34 16 6 N -0.43 -5.68 10.53 -12.17 -0.13 -5.81 16 7 C 0.31 3.95 5.42 -154.41 -0.84 3.11 16 8 N -0.57 -6.79 2.10 -122.64 -0.26 -7.04 16 9 C 0.08 0.59 9.30 59.85 0.56 1.15 16 10 C 0.52 7.70 7.64 -10.99 -0.08 7.62 16 11 O -0.52 -10.00 15.95 5.56 0.09 -9.91 16 12 C -0.13 -1.72 4.32 -27.88 -0.12 -1.84 16 13 C -0.11 -1.87 4.50 -26.73 -0.12 -1.99 16 14 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 15 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 16 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.05 1.60 5.46 -17.81 -0.10 1.50 16 19 N -0.90 -27.57 13.29 55.43 0.74 -26.84 16 20 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.61 6.60 -51.93 -0.34 0.27 16 27 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 28 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.46 6.66 -51.92 -0.35 0.12 16 31 H 0.07 0.41 8.01 -51.93 -0.42 0.00 16 32 H 0.10 0.99 7.41 -51.93 -0.38 0.61 16 33 H 0.10 1.08 8.11 -51.93 -0.42 0.66 16 34 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -36.99 340.43 -7.53 -44.52 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -6.10 Total: -4.92 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -1.88 Total: -7.04 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.26 Total: -44.63 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.99 -7.53 -44.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893282980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.923 kcal (2) G-P(sol) polarization free energy of solvation -36.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds