Wall clock time and date at job start Mon Mar 30 2020 02:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31979 * 120.04647 * 2 1 4 4 C 1.32222 * 120.07414 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.16975 * 359.97438 * 4 3 2 6 6 N 1.32181 * 120.09113 * 0.02562 * 5 4 3 7 7 C 1.32634 * 119.92337 * 359.97438 * 6 5 4 8 8 N 1.39403 * 120.08367 * 180.02562 * 7 6 5 9 9 C 1.46503 * 120.00010 * 265.23028 * 8 7 6 10 10 C 1.34777 * 120.00260 * 85.22638 * 8 7 6 11 11 O 1.21276 * 119.99522 * 0.02562 * 10 8 7 12 12 C 1.50697 * 120.00271 * 180.02562 * 10 8 7 13 13 C 1.53002 * 109.47376 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47248 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46898 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.46999 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00305 * 0.02562 * 16 15 14 18 18 C 1.37889 * 120.00119 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99707 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99923 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47242 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46843 * 120.00336 * 20 18 16 23 23 H 1.48499 * 109.46980 * 239.99861 * 20 18 16 24 24 H 1.08997 * 109.47149 * 274.92248 * 1 2 3 25 25 H 1.08994 * 109.47053 * 34.92633 * 1 2 3 26 26 H 1.08999 * 109.46756 * 154.92865 * 1 2 3 27 27 H 1.08007 * 119.91361 * 180.02562 * 4 3 2 28 28 H 1.07998 * 119.95634 * 180.27609 * 5 4 3 29 29 H 1.09001 * 109.47717 * 95.24807 * 9 8 7 30 30 H 1.09009 * 109.47208 * 215.24757 * 9 8 7 31 31 H 1.09004 * 109.47102 * 335.24447 * 9 8 7 32 32 H 1.09005 * 109.46695 * 299.99741 * 12 10 8 33 33 H 1.08996 * 109.47503 * 59.99381 * 12 10 8 34 34 H 1.09000 * 109.46962 * 300.00354 * 13 12 10 35 35 H 1.09004 * 109.46998 * 59.99606 * 13 12 10 36 36 H 1.09001 * 109.47004 * 299.99458 * 14 13 12 37 37 H 1.08991 * 109.47472 * 60.00138 * 14 13 12 38 38 H 1.08997 * 109.47415 * 300.00037 * 15 14 13 39 39 H 1.09004 * 109.47159 * 59.99943 * 15 14 13 40 40 H 0.96996 * 119.99512 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1424 0.0000 4 6 3.4900 1.1431 0.0005 5 6 4.1854 -0.0519 0.0016 6 7 3.5303 -1.1999 0.0016 7 6 2.2040 -1.2048 0.0011 8 7 1.5097 -2.4136 0.0016 9 6 1.0538 -2.9971 -1.2625 10 6 1.2578 -3.0456 1.1651 11 8 1.6348 -2.5624 2.2115 12 6 0.5077 -4.3527 1.1656 13 6 0.3577 -4.8540 2.6033 14 6 -0.4044 -6.1807 2.6039 15 6 -0.5539 -6.6824 4.0416 16 6 -1.3050 -7.9888 4.0422 17 1 -1.6418 -8.4186 3.1104 18 6 -1.5615 -8.6360 5.2324 19 7 -1.1510 -8.1129 6.3671 20 14 -2.4920 -10.2558 5.2331 21 1 -2.8400 -10.6274 3.8381 22 1 -1.6399 -11.3158 5.8294 23 1 -3.7352 -10.1121 6.0324 24 1 -0.3633 0.0882 1.0238 25 1 -0.3633 0.8425 -0.5883 26 1 -0.3633 -0.9308 -0.4355 27 1 4.0282 2.0795 0.0009 28 1 5.2654 -0.0473 0.0065 29 1 1.7879 -3.7224 -1.6137 30 1 0.0963 -3.4948 -1.1086 31 1 0.9380 -2.2084 -2.0059 32 1 -0.4792 -4.2053 0.7269 33 1 1.0592 -5.0884 0.5803 34 1 1.3447 -5.0013 3.0416 35 1 -0.1937 -4.1184 3.1890 36 1 -1.3915 -6.0329 2.1659 37 1 0.1465 -6.9165 2.0183 38 1 0.4333 -6.8302 4.4793 39 1 -1.1047 -5.9467 4.6277 40 1 -1.3312 -8.5684 7.2043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893282980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:32 Heat of formation + Delta-G solvation = -23.232929 kcal Electronic energy + Delta-G solvation = -20769.921120 eV Core-core repulsion = 17583.588074 eV Total energy + Delta-G solvation = -3186.333046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.54302 -40.78410 -37.18959 -36.60269 -35.62224 -34.65312 -33.11088 -31.39199 -29.28210 -27.87930 -27.64506 -25.62587 -24.08159 -23.71990 -21.80990 -20.76593 -19.11701 -18.63847 -18.35285 -17.86303 -17.07630 -16.94263 -16.50086 -15.92162 -15.66966 -15.64940 -14.81308 -14.53497 -14.32510 -13.89516 -13.84864 -13.70029 -13.59574 -13.50560 -13.23011 -13.14687 -12.84764 -12.70780 -12.31051 -12.20036 -12.15801 -12.14178 -11.37789 -11.36603 -11.21244 -10.98567 -10.73671 -10.54964 -10.14797 -9.78404 -8.18001 -6.29967 -0.40282 -0.00394 1.38985 1.41358 1.42237 1.55691 1.60114 2.42672 2.52016 3.06906 3.15059 3.21465 3.43446 3.61814 3.95544 4.00758 4.06580 4.11589 4.28479 4.32867 4.52571 4.56528 4.61314 4.66761 4.71879 4.78165 4.86417 4.89179 4.97889 5.10499 5.17801 5.33822 5.37134 5.53488 5.58063 5.79286 5.89367 6.06291 6.19530 6.26220 6.66604 6.89150 6.99387 7.39800 8.94592 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040179 B = 0.002781 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.716428 B =10064.237654 C =10194.070417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.084 3.916 3 N -0.453 5.453 4 C 0.060 3.940 5 C 0.054 3.946 6 N -0.471 5.471 7 C 0.279 3.721 8 N -0.566 5.566 9 C 0.071 3.929 10 C 0.521 3.479 11 O -0.578 6.578 12 C -0.119 4.119 13 C -0.097 4.097 14 C -0.093 4.093 15 C 0.017 3.983 16 C -0.538 4.538 17 H 0.068 0.932 18 C -0.008 4.008 19 N -0.939 5.939 20 Si 0.970 3.030 21 H -0.255 1.255 22 H -0.281 1.281 23 H -0.279 1.279 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.215 0.785 28 H 0.206 0.794 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.122 0.878 34 H 0.037 0.963 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.062 0.938 38 H -0.018 1.018 39 H -0.015 1.015 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.109 17.333 -21.987 28.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.057 4.057 3 N -0.169 5.169 4 C -0.099 4.099 5 C -0.107 4.107 6 N -0.187 5.187 7 C 0.051 3.949 8 N -0.299 5.299 9 C -0.069 4.069 10 C 0.312 3.688 11 O -0.456 6.456 12 C -0.159 4.159 13 C -0.135 4.135 14 C -0.131 4.131 15 C -0.020 4.020 16 C -0.576 4.576 17 H 0.086 0.914 18 C -0.205 4.205 19 N -0.580 5.580 20 Si 0.794 3.206 21 H -0.179 1.179 22 H -0.206 1.206 23 H -0.205 1.205 24 H 0.092 0.908 25 H 0.116 0.884 26 H 0.112 0.888 27 H 0.232 0.768 28 H 0.223 0.777 29 H 0.091 0.909 30 H 0.131 0.869 31 H 0.107 0.893 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.000 1.000 39 H 0.003 0.997 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.279 17.514 -21.285 28.271 hybrid contribution 0.111 -0.698 0.892 1.138 sum 6.390 16.817 -20.393 27.194 Atomic orbital electron populations 1.20753 0.86059 1.05192 1.03689 1.22675 0.99756 0.88075 0.95228 1.68384 1.10343 1.28212 1.10005 1.24498 0.90080 1.01545 0.93819 1.24302 1.03471 0.87107 0.95863 1.68059 1.09174 1.32686 1.08830 1.19136 0.88475 0.87689 0.99613 1.45368 1.54806 1.20540 1.09178 1.22304 1.02203 0.99941 0.82424 1.21603 0.78527 0.86734 0.81924 1.90708 1.53571 1.68037 1.33245 1.21742 1.02835 0.92151 0.99131 1.21278 0.99681 0.97027 0.95562 1.21429 0.99680 0.94920 0.97065 1.19068 0.94447 0.94879 0.93572 1.21793 1.35563 1.07017 0.93269 0.91355 1.26111 0.97067 1.02108 0.95255 1.70146 1.48239 1.41148 0.98473 0.85331 0.77959 0.78469 0.78862 1.17898 1.20640 1.20511 0.90799 0.88376 0.88819 0.76826 0.77692 0.90867 0.86888 0.89329 0.84850 0.85962 0.94392 0.93678 0.91448 0.91950 0.99995 0.99708 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 10.03 71.24 0.71 -1.00 16 2 C 0.08 1.92 6.81 42.76 0.29 2.21 16 3 N -0.45 -9.64 10.42 -182.80 -1.90 -11.55 16 4 C 0.06 0.93 11.21 84.64 0.95 1.88 16 5 C 0.05 0.93 11.22 84.64 0.95 1.88 16 6 N -0.47 -12.08 10.53 -192.43 -2.03 -14.10 16 7 C 0.28 7.03 5.42 132.87 0.72 7.75 16 8 N -0.57 -12.73 2.10 -660.31 -1.39 -14.11 16 9 C 0.07 0.83 9.30 127.77 1.19 2.02 16 10 C 0.52 15.18 7.64 87.66 0.67 15.84 16 11 O -0.58 -23.27 15.95 -3.02 -0.05 -23.32 16 12 C -0.12 -2.88 4.32 29.85 0.13 -2.75 16 13 C -0.10 -3.50 4.50 30.59 0.14 -3.36 16 14 C -0.09 -3.73 5.15 30.59 0.16 -3.58 16 15 C 0.02 0.96 4.97 29.85 0.15 1.11 16 16 C -0.54 -31.06 9.11 25.60 0.23 -30.83 16 17 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 18 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 19 N -0.94 -59.39 13.29 21.45 0.28 -59.10 16 20 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 21 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 1.29 6.60 -2.39 -0.02 1.27 16 27 H 0.22 1.29 8.06 -2.91 -0.02 1.27 16 28 H 0.21 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.11 0.73 6.66 -2.38 -0.02 0.72 16 31 H 0.09 0.77 8.01 -2.39 -0.02 0.75 16 32 H 0.13 2.24 7.41 -2.38 -0.02 2.22 16 33 H 0.12 2.36 8.11 -2.39 -0.02 2.34 16 34 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 35 H 0.04 1.77 8.10 -2.38 -0.02 1.75 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 39 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 40 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -84.89 340.43 4.71 -80.18 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 1.02 Total: 4.12 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 6.75 Total: -8.87 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -5.03 Total: -98.86 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -84.89 4.71 -80.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893282980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.943 kcal (2) G-P(sol) polarization free energy of solvation -84.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds