Wall clock time and date at job start Mon Mar 30 2020 01:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38879 * 120.74769 * 2 1 4 4 C 1.38017 * 119.32654 * 179.97438 * 3 2 1 5 5 N 1.31975 * 120.85945 * 359.97438 * 4 3 2 6 6 C 1.32397 * 121.62031 * 359.73235 * 5 4 3 7 7 N 1.39001 * 119.70423 * 180.28217 * 6 5 4 8 8 C 1.38294 * 120.74303 * 179.97438 * 2 1 3 9 9 C 1.50704 * 120.45552 * 359.97438 * 8 2 1 10 10 N 1.46894 * 109.46957 * 90.00072 * 9 8 2 11 11 C 1.48556 * 111.00096 * 69.87713 * 10 9 8 12 12 C 1.54386 * 104.59601 * 200.95984 * 11 10 9 13 13 C 1.54255 * 105.05943 * 23.85156 * 12 11 10 14 14 O 1.42907 * 110.32503 * 241.00500 * 13 12 11 15 15 C 1.50694 * 110.32683 * 118.89692 * 13 12 11 16 16 H 1.07995 * 120.00402 * 238.55030 * 15 13 12 17 17 C 1.37881 * 119.99940 * 58.54567 * 15 13 12 18 18 N 1.31515 * 119.99998 * 5.75985 * 17 15 13 19 19 Si 1.86799 * 120.00397 * 185.75462 * 17 15 13 20 20 H 1.48494 * 109.47417 * 265.14925 * 19 17 15 21 21 H 1.48500 * 109.47349 * 145.14710 * 19 17 15 22 22 H 1.48505 * 109.46612 * 25.14965 * 19 17 15 23 23 C 1.48565 * 111.00208 * 314.45450 * 10 9 8 24 24 H 1.08996 * 109.47169 * 270.02614 * 1 2 3 25 25 H 1.09009 * 109.46899 * 30.02717 * 1 2 3 26 26 H 1.08995 * 109.47492 * 150.02311 * 1 2 3 27 27 H 1.08001 * 120.33375 * 359.97438 * 3 2 1 28 28 H 1.08009 * 119.57142 * 179.97438 * 4 3 2 29 29 H 0.96997 * 119.99619 * 180.24221 * 7 6 5 30 30 H 0.96994 * 119.99755 * 0.25255 * 7 6 5 31 31 H 1.09004 * 109.46666 * 329.99804 * 9 8 2 32 32 H 1.08999 * 109.47087 * 210.00303 * 9 8 2 33 33 H 1.09002 * 110.41385 * 82.17829 * 11 10 9 34 34 H 1.09002 * 110.41019 * 319.73430 * 11 10 9 35 35 H 1.08997 * 110.31968 * 264.95556 * 12 11 10 36 36 H 1.08994 * 110.41128 * 142.79115 * 12 11 10 37 37 H 0.96703 * 113.99631 * 303.58309 * 14 13 12 38 38 H 0.96995 * 120.00217 * 180.02562 * 18 17 15 39 39 H 1.09002 * 110.40592 * 40.26455 * 23 10 9 40 40 H 1.09000 * 110.41316 * 277.82052 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2171 1.1936 0.0000 4 6 3.5969 1.1593 0.0005 5 7 4.2455 0.0100 0.0016 6 6 3.6048 -1.1486 0.0074 7 7 4.3281 -2.3356 0.0142 8 6 2.2140 -1.1886 0.0005 9 6 1.4880 -2.5092 0.0017 10 7 1.2516 -2.9392 -1.3829 11 6 2.5237 -3.3283 -2.0441 12 6 2.2245 -3.2243 -3.5551 13 6 1.0507 -2.2293 -3.6637 14 8 -0.0849 -2.8640 -4.2551 15 6 1.4579 -1.0259 -4.4742 16 1 1.4064 -0.0390 -4.0388 17 6 1.8963 -1.1849 -5.7717 18 7 1.8525 -2.3701 -6.3400 19 14 2.5524 0.2830 -6.7225 20 1 1.4599 0.8743 -7.5361 21 1 3.6526 -0.1581 -7.6170 22 1 3.0663 1.3000 -5.7701 23 6 0.7394 -1.8158 -2.2092 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3634 -0.8901 -0.5134 27 1 1.6948 2.1389 -0.0004 28 1 4.1530 2.0852 0.0001 29 1 3.8630 -3.1869 0.0149 30 1 5.2977 -2.3126 0.0183 31 1 0.5332 -2.3984 0.5159 32 1 2.0930 -3.2560 0.5159 33 1 2.7925 -4.3509 -1.7792 34 1 3.3223 -2.6403 -1.7665 35 1 1.9339 -4.1973 -3.9512 36 1 3.0945 -2.8432 -4.0895 37 1 0.0893 -3.2519 -5.1237 38 1 2.1613 -2.4821 -7.2527 39 1 1.2589 -0.8912 -1.9574 40 1 -0.3352 -1.6996 -2.0687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895078225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:28 Heat of formation + Delta-G solvation = 6.078983 kcal Electronic energy + Delta-G solvation = -23108.745855 eV Core-core repulsion = 19923.683869 eV Total energy + Delta-G solvation = -3185.061986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.66910 -38.08738 -35.27999 -34.97714 -33.00091 -32.09849 -30.40934 -28.66897 -28.13459 -27.35913 -25.50688 -23.96686 -21.99443 -21.50681 -19.94595 -19.35393 -17.35399 -16.99303 -16.75452 -15.68324 -15.33360 -14.86912 -14.78743 -14.52851 -14.15967 -13.66106 -13.53019 -13.30317 -12.73733 -12.56022 -12.34098 -12.28550 -12.09732 -11.59332 -11.20320 -11.18400 -11.05435 -10.73943 -10.60846 -10.50187 -10.34596 -10.24245 -9.71855 -9.27317 -9.09510 -8.94473 -8.51760 -8.10015 -7.87610 -7.45532 -6.17150 -4.23509 1.49495 1.72410 3.23643 3.31081 3.35799 3.70043 4.13504 4.33353 4.69968 4.90250 4.97366 5.10194 5.16449 5.19753 5.45375 5.62923 5.73477 5.75753 5.78075 5.86017 5.98308 6.06675 6.09065 6.22118 6.26021 6.28990 6.51445 6.66355 6.69529 6.87335 6.95348 7.06020 7.37278 7.42537 7.52148 7.56780 7.62274 7.67158 7.84713 8.27818 8.46619 8.78883 9.43816 9.60832 10.90130 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.007493 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.894465 B = 3736.162092 C = 4182.142291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.015 3.985 3 C -0.235 4.235 4 C 0.145 3.855 5 N -0.550 5.550 6 C 0.416 3.584 7 N -0.852 5.852 8 C -0.231 4.231 9 C 0.089 3.911 10 N -0.500 5.500 11 C 0.011 3.989 12 C -0.119 4.119 13 C 0.253 3.747 14 O -0.587 6.587 15 C -0.532 4.532 16 H 0.057 0.943 17 C 0.071 3.929 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.043 3.957 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.128 0.872 28 H 0.150 0.850 29 H 0.408 0.592 30 H 0.400 0.600 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.377 0.623 38 H 0.265 0.735 39 H 0.062 0.938 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 1.678 12.675 12.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.006 3.994 3 C -0.257 4.257 4 C -0.012 4.012 5 N -0.269 5.269 6 C 0.178 3.822 7 N -0.398 5.398 8 C -0.240 4.240 9 C -0.040 4.040 10 N -0.222 5.222 11 C -0.117 4.117 12 C -0.157 4.157 13 C 0.213 3.787 14 O -0.395 6.395 15 C -0.570 4.570 16 H 0.075 0.925 17 C -0.131 4.131 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.084 4.084 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.145 0.855 28 H 0.168 0.832 29 H 0.240 0.760 30 H 0.229 0.771 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.226 0.774 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.127 1.321 13.099 13.336 hybrid contribution 0.736 1.038 -1.233 1.772 sum 2.863 2.359 11.866 12.432 Atomic orbital electron populations 1.21187 0.90606 1.04690 1.02433 1.19895 0.96331 0.91879 0.91247 1.21657 0.95343 0.98302 1.10437 1.22246 0.91660 0.94655 0.92600 1.67124 1.40681 0.97425 1.21633 1.18048 0.87685 0.86648 0.89779 1.42512 1.09365 1.04697 1.83271 1.20651 0.92906 0.97866 1.12531 1.21168 0.99074 0.90517 0.93235 1.65801 1.23553 1.32781 1.00075 1.23506 0.91796 0.99121 0.97311 1.22815 1.01518 0.99870 0.91544 1.19254 0.82287 0.89368 0.87814 1.86145 1.38568 1.76919 1.37873 1.21665 1.43683 0.93594 0.98065 0.92484 1.24963 0.94810 0.95987 0.97354 1.69715 1.47373 1.22151 1.14044 0.86553 0.78718 0.82851 0.79780 1.20534 1.21055 1.19801 1.23415 0.99303 0.92237 0.93477 0.90971 0.90937 0.89377 0.85451 0.83223 0.75954 0.77116 0.89916 0.91374 0.92201 0.92667 0.92960 0.91384 0.77359 0.92472 0.92020 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.67 36.01 0.31 -1.47 16 2 C 0.02 0.23 4.36 -104.36 -0.46 -0.22 16 3 C -0.23 -3.43 9.81 -39.42 -0.39 -3.82 16 4 C 0.15 2.18 11.17 -17.57 -0.20 1.99 16 5 N -0.55 -9.23 10.39 -12.44 -0.13 -9.36 16 6 C 0.42 6.76 6.76 -155.02 -1.05 5.71 16 7 N -0.85 -11.32 7.46 31.13 0.23 -11.09 16 8 C -0.23 -3.72 3.85 -104.26 -0.40 -4.12 16 9 C 0.09 1.37 5.14 -4.98 -0.03 1.35 16 10 N -0.50 -9.45 5.65 -231.40 -1.31 -10.76 16 11 C 0.01 0.20 5.30 -2.18 -0.01 0.19 16 12 C -0.12 -2.80 5.53 -25.35 -0.14 -2.94 16 13 C 0.25 6.39 1.05 -90.39 -0.09 6.29 16 14 O -0.59 -15.71 12.94 -35.23 -0.46 -16.17 16 15 C -0.53 -14.59 8.10 -34.44 -0.28 -14.87 16 16 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 17 C 0.07 1.92 4.93 -17.82 -0.09 1.84 16 18 N -0.89 -24.31 10.92 55.43 0.61 -23.71 16 19 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.04 0.92 3.95 -2.18 -0.01 0.92 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.92 8.10 -51.92 -0.42 0.50 16 26 H 0.09 1.31 3.96 -51.93 -0.21 1.11 16 27 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.15 1.77 8.06 -52.48 -0.42 1.35 16 29 H 0.41 4.94 5.51 -40.82 -0.23 4.72 16 30 H 0.40 4.69 8.95 -40.82 -0.37 4.33 16 31 H 0.08 1.17 6.80 -51.93 -0.35 0.82 16 32 H 0.07 0.91 6.50 -51.93 -0.34 0.57 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.05 4.31 -51.93 -0.22 0.83 16 35 H 0.05 1.26 7.98 -51.93 -0.41 0.85 16 36 H 0.07 1.75 7.16 -51.93 -0.37 1.38 16 37 H 0.38 10.18 7.43 45.56 0.34 10.52 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.06 1.36 4.19 -51.93 -0.22 1.14 16 40 H 0.07 1.55 6.73 -51.93 -0.35 1.20 16 LS Contribution 302.80 15.07 4.56 4.56 Total: -1.00 -30.21 302.80 -8.71 -38.92 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -4.37 Total: 20.55 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -2.82 Total: -9.16 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.60 Total: -54.92 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.46 Total: -16.17 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.21 -8.71 -38.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895078225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.002 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds