Wall clock time and date at job start Mon Mar 30 2020 01:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38879 * 120.74769 * 2 1 4 4 C 1.38017 * 119.32654 * 179.97438 * 3 2 1 5 5 N 1.31975 * 120.85945 * 359.97438 * 4 3 2 6 6 C 1.32397 * 121.62031 * 359.73235 * 5 4 3 7 7 N 1.39001 * 119.70423 * 180.28217 * 6 5 4 8 8 C 1.38294 * 120.74303 * 179.97438 * 2 1 3 9 9 C 1.50704 * 120.45552 * 359.97438 * 8 2 1 10 10 N 1.46894 * 109.46957 * 90.00072 * 9 8 2 11 11 C 1.48556 * 111.00096 * 69.87713 * 10 9 8 12 12 C 1.54386 * 104.59601 * 200.95984 * 11 10 9 13 13 C 1.54255 * 105.05943 * 23.85156 * 12 11 10 14 14 O 1.42907 * 110.32503 * 241.00500 * 13 12 11 15 15 C 1.50694 * 110.32683 * 118.89692 * 13 12 11 16 16 H 1.07995 * 120.00402 * 238.55030 * 15 13 12 17 17 C 1.37881 * 119.99940 * 58.54567 * 15 13 12 18 18 N 1.31515 * 119.99998 * 5.75985 * 17 15 13 19 19 Si 1.86799 * 120.00397 * 185.75462 * 17 15 13 20 20 H 1.48494 * 109.47417 * 265.14925 * 19 17 15 21 21 H 1.48500 * 109.47349 * 145.14710 * 19 17 15 22 22 H 1.48505 * 109.46612 * 25.14965 * 19 17 15 23 23 C 1.48565 * 111.00208 * 314.45450 * 10 9 8 24 24 H 1.08996 * 109.47169 * 270.02614 * 1 2 3 25 25 H 1.09009 * 109.46899 * 30.02717 * 1 2 3 26 26 H 1.08995 * 109.47492 * 150.02311 * 1 2 3 27 27 H 1.08001 * 120.33375 * 359.97438 * 3 2 1 28 28 H 1.08009 * 119.57142 * 179.97438 * 4 3 2 29 29 H 0.96997 * 119.99619 * 180.24221 * 7 6 5 30 30 H 0.96994 * 119.99755 * 0.25255 * 7 6 5 31 31 H 1.09004 * 109.46666 * 329.99804 * 9 8 2 32 32 H 1.08999 * 109.47087 * 210.00303 * 9 8 2 33 33 H 1.09002 * 110.41385 * 82.17829 * 11 10 9 34 34 H 1.09002 * 110.41019 * 319.73430 * 11 10 9 35 35 H 1.08997 * 110.31968 * 264.95556 * 12 11 10 36 36 H 1.08994 * 110.41128 * 142.79115 * 12 11 10 37 37 H 0.96703 * 113.99631 * 303.58309 * 14 13 12 38 38 H 0.96995 * 120.00217 * 180.02562 * 18 17 15 39 39 H 1.09002 * 110.40592 * 40.26455 * 23 10 9 40 40 H 1.09000 * 110.41316 * 277.82052 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2171 1.1936 0.0000 4 6 3.5969 1.1593 0.0005 5 7 4.2455 0.0100 0.0016 6 6 3.6048 -1.1486 0.0074 7 7 4.3281 -2.3356 0.0142 8 6 2.2140 -1.1886 0.0005 9 6 1.4880 -2.5092 0.0017 10 7 1.2516 -2.9392 -1.3829 11 6 2.5237 -3.3283 -2.0441 12 6 2.2245 -3.2243 -3.5551 13 6 1.0507 -2.2293 -3.6637 14 8 -0.0849 -2.8640 -4.2551 15 6 1.4579 -1.0259 -4.4742 16 1 1.4064 -0.0390 -4.0388 17 6 1.8963 -1.1849 -5.7717 18 7 1.8525 -2.3701 -6.3400 19 14 2.5524 0.2830 -6.7225 20 1 1.4599 0.8743 -7.5361 21 1 3.6526 -0.1581 -7.6170 22 1 3.0663 1.3000 -5.7701 23 6 0.7394 -1.8158 -2.2092 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3634 -0.8901 -0.5134 27 1 1.6948 2.1389 -0.0004 28 1 4.1530 2.0852 0.0001 29 1 3.8630 -3.1869 0.0149 30 1 5.2977 -2.3126 0.0183 31 1 0.5332 -2.3984 0.5159 32 1 2.0930 -3.2560 0.5159 33 1 2.7925 -4.3509 -1.7792 34 1 3.3223 -2.6403 -1.7665 35 1 1.9339 -4.1973 -3.9512 36 1 3.0945 -2.8432 -4.0895 37 1 0.0893 -3.2519 -5.1237 38 1 2.1613 -2.4821 -7.2527 39 1 1.2589 -0.8912 -1.9574 40 1 -0.3352 -1.6996 -2.0687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895078225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:28 Heat of formation + Delta-G solvation = -17.718443 kcal Electronic energy + Delta-G solvation = -23109.777789 eV Core-core repulsion = 19923.683869 eV Total energy + Delta-G solvation = -3186.093920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.90143 -39.67874 -36.95969 -36.11397 -34.39177 -34.19752 -31.85645 -30.09606 -29.62278 -28.75897 -27.09545 -25.61512 -23.35244 -22.66313 -21.59729 -21.01642 -19.01933 -18.50087 -17.87597 -17.20851 -17.05347 -16.48263 -16.14654 -15.95922 -15.56727 -15.13050 -15.06999 -14.68616 -14.26178 -13.88196 -13.85832 -13.60666 -13.41585 -13.20564 -13.14944 -12.89364 -12.56883 -12.38975 -12.30825 -12.13136 -11.98820 -11.81406 -11.35875 -11.00628 -10.57201 -10.46091 -10.17015 -10.07176 -9.35524 -8.63931 -8.23293 -6.36926 0.33527 0.57744 1.34281 1.36718 1.46258 2.35182 2.63726 2.96211 3.02278 3.28888 3.73384 3.85626 3.96789 4.02556 4.06732 4.21900 4.31799 4.36091 4.58824 4.60571 4.64359 4.75653 4.78707 4.83278 4.94109 4.96744 5.05897 5.14373 5.24304 5.28083 5.47226 5.54036 5.57185 5.73052 5.79819 5.86515 6.17961 6.29176 6.35064 6.58722 6.68955 7.33356 7.35565 7.49830 8.82354 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.007493 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.894465 B = 3736.162092 C = 4182.142291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.003 3.997 3 C -0.243 4.243 4 C 0.135 3.865 5 N -0.574 5.574 6 C 0.401 3.599 7 N -0.843 5.843 8 C -0.249 4.249 9 C 0.092 3.908 10 N -0.501 5.501 11 C 0.021 3.979 12 C -0.112 4.112 13 C 0.234 3.766 14 O -0.596 6.596 15 C -0.554 4.554 16 H 0.045 0.955 17 C 0.032 3.968 18 N -0.908 5.908 19 Si 0.949 3.051 20 H -0.274 1.274 21 H -0.279 1.279 22 H -0.275 1.275 23 C 0.058 3.942 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.150 0.850 28 H 0.176 0.824 29 H 0.413 0.587 30 H 0.407 0.593 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.371 0.629 38 H 0.268 0.732 39 H 0.059 0.941 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.168 2.194 13.862 14.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.006 4.006 3 C -0.265 4.265 4 C -0.022 4.022 5 N -0.293 5.293 6 C 0.163 3.837 7 N -0.390 5.390 8 C -0.257 4.257 9 C -0.037 4.037 10 N -0.223 5.223 11 C -0.107 4.107 12 C -0.151 4.151 13 C 0.194 3.806 14 O -0.404 6.404 15 C -0.593 4.593 16 H 0.063 0.937 17 C -0.169 4.169 18 N -0.547 5.547 19 Si 0.775 3.225 20 H -0.200 1.200 21 H -0.204 1.204 22 H -0.200 1.200 23 C -0.069 4.069 24 H 0.116 0.884 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.168 0.832 28 H 0.193 0.807 29 H 0.247 0.753 30 H 0.237 0.763 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.219 0.781 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.418 1.820 14.303 14.619 hybrid contribution 0.646 0.902 -1.590 1.939 sum 3.064 2.721 12.713 13.357 Atomic orbital electron populations 1.21174 0.89417 1.04039 1.03903 1.20258 0.97411 0.92149 0.90736 1.21969 0.95450 0.99127 1.09981 1.22786 0.92341 0.95237 0.91801 1.67176 1.41368 0.98078 1.22660 1.18331 0.88172 0.87291 0.89909 1.42460 1.09751 1.04210 1.82582 1.20742 0.93033 0.98273 1.13695 1.21251 1.00354 0.91033 0.91016 1.65756 1.23277 1.31835 1.01464 1.23436 0.92172 1.00948 0.94144 1.22610 0.99666 0.98372 0.94488 1.19561 0.82451 0.89098 0.89468 1.86139 1.39671 1.77009 1.37557 1.21881 1.44579 0.93849 0.98951 0.93697 1.25612 0.94889 0.98320 0.98102 1.69790 1.47347 1.23349 1.14255 0.85680 0.78290 0.80011 0.78500 1.19997 1.20410 1.19954 1.23155 0.99099 0.92963 0.91713 0.88376 0.90469 0.91006 0.83185 0.80652 0.75309 0.76307 0.88521 0.89037 0.89418 0.92233 0.94274 0.94274 0.78061 0.92279 0.92355 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.67 71.24 0.62 -2.60 16 2 C 0.00 0.09 4.36 -19.70 -0.09 0.00 16 3 C -0.24 -6.66 9.81 22.37 0.22 -6.44 16 4 C 0.13 3.83 11.17 84.62 0.95 4.78 16 5 N -0.57 -18.50 10.39 -193.26 -2.01 -20.51 16 6 C 0.40 12.43 6.76 133.07 0.90 13.33 16 7 N -0.84 -20.90 7.46 -55.43 -0.41 -21.31 16 8 C -0.25 -7.59 3.85 -19.63 -0.08 -7.67 16 9 C 0.09 2.61 5.14 85.56 0.44 3.05 16 10 N -0.50 -18.19 5.65 -886.02 -5.01 -23.19 16 11 C 0.02 0.78 5.30 86.45 0.46 1.24 16 12 C -0.11 -5.36 5.53 31.49 0.17 -5.18 16 13 C 0.23 11.93 1.05 -10.65 -0.01 11.92 16 14 O -0.60 -32.44 12.94 -148.98 -1.93 -34.37 16 15 C -0.55 -30.80 8.10 25.60 0.21 -30.59 16 16 H 0.04 2.53 7.62 -2.91 -0.02 2.51 16 17 C 0.03 1.71 4.93 84.66 0.42 2.13 16 18 N -0.91 -49.94 10.92 21.45 0.23 -49.71 16 19 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 23 C 0.06 2.50 3.95 86.45 0.34 2.84 16 24 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.08 1.83 8.10 -2.38 -0.02 1.81 16 26 H 0.07 2.04 3.96 -2.39 -0.01 2.03 16 27 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 28 H 0.18 3.81 8.06 -2.91 -0.02 3.78 16 29 H 0.41 9.04 5.51 -92.71 -0.51 8.53 16 30 H 0.41 8.91 8.95 -92.71 -0.83 8.08 16 31 H 0.10 2.49 6.80 -2.39 -0.02 2.47 16 32 H 0.09 2.16 6.50 -2.39 -0.02 2.15 16 33 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.06 2.18 4.31 -2.39 -0.01 2.17 16 35 H 0.04 1.91 7.98 -2.39 -0.02 1.89 16 36 H 0.04 2.04 7.16 -2.39 -0.02 2.03 16 37 H 0.37 20.55 7.43 -74.06 -0.55 20.00 16 38 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 39 H 0.06 2.55 4.19 -2.39 -0.01 2.54 16 40 H 0.07 2.88 6.73 -2.39 -0.02 2.86 16 Total: -1.00 -64.55 302.80 -3.33 -67.88 By element: Atomic # 1 Polarization: 49.55 SS G_CDS: -0.78 Total: 48.76 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 4.55 Total: -13.19 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -7.19 Total: -114.72 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -1.93 Total: -34.37 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -64.55 -3.33 -67.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895078225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.161 kcal (2) G-P(sol) polarization free energy of solvation -64.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds