Wall clock time and date at job start Mon Mar 30 2020 01:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38878 * 120.74926 * 2 1 4 4 C 1.38028 * 119.32876 * 179.97438 * 3 2 1 5 5 N 1.31965 * 120.85665 * 0.02562 * 4 3 2 6 6 C 1.32398 * 121.62304 * 359.72669 * 5 4 3 7 7 N 1.39006 * 119.70706 * 180.28635 * 6 5 4 8 8 C 1.38299 * 120.74250 * 179.97438 * 2 1 3 9 9 C 1.50698 * 120.45685 * 359.97438 * 8 2 1 10 10 N 1.46898 * 109.47256 * 82.08034 * 9 8 2 11 11 C 1.48719 * 111.01699 * 59.19582 * 10 9 8 12 12 C 1.54377 * 104.51964 * 158.96741 * 11 10 9 13 13 C 1.54255 * 105.14662 * 336.26827 * 12 11 10 14 14 O 1.42903 * 110.32407 * 118.84828 * 13 12 11 15 15 C 1.50699 * 110.32341 * 240.94882 * 13 12 11 16 16 H 1.07996 * 119.99906 * 25.88374 * 15 13 12 17 17 C 1.37880 * 119.99806 * 205.87876 * 15 13 12 18 18 N 1.31517 * 119.99695 * 170.79390 * 17 15 13 19 19 Si 1.86794 * 120.00370 * 350.79510 * 17 15 13 20 20 H 1.48498 * 109.47386 * 94.92069 * 19 17 15 21 21 H 1.48499 * 109.47189 * 214.92275 * 19 17 15 22 22 H 1.48501 * 109.47217 * 334.92195 * 19 17 15 23 23 C 1.48555 * 111.00245 * 174.70601 * 10 9 8 24 24 H 1.09000 * 109.46792 * 270.02126 * 1 2 3 25 25 H 1.09000 * 109.46948 * 30.01616 * 1 2 3 26 26 H 1.09004 * 109.47389 * 150.01968 * 1 2 3 27 27 H 1.07997 * 120.33711 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.56940 * 179.97438 * 4 3 2 29 29 H 0.97003 * 120.00010 * 176.73481 * 7 6 5 30 30 H 0.96997 * 119.99691 * 356.73556 * 7 6 5 31 31 H 1.09008 * 109.46793 * 322.08024 * 9 8 2 32 32 H 1.08994 * 109.47608 * 202.08376 * 9 8 2 33 33 H 1.09004 * 110.38462 * 40.23747 * 11 10 9 34 34 H 1.09003 * 110.50585 * 277.75464 * 11 10 9 35 35 H 1.08997 * 110.32277 * 217.32295 * 12 11 10 36 36 H 1.08999 * 110.31930 * 95.21579 * 12 11 10 37 37 H 0.96704 * 114.00135 * 56.07070 * 14 13 12 38 38 H 0.96999 * 120.00010 * 180.02562 * 18 17 15 39 39 H 1.09003 * 110.41581 * 82.17580 * 23 10 9 40 40 H 1.09004 * 110.51437 * 319.79012 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1935 0.0000 4 6 3.5969 1.1593 0.0005 5 7 4.2455 0.0100 0.0005 6 6 3.6048 -1.1486 0.0054 7 7 4.3280 -2.3357 0.0113 8 6 2.2140 -1.1886 0.0005 9 6 1.4880 -2.5092 0.0017 10 7 1.0843 -2.8473 -1.3697 11 6 2.2668 -2.9362 -2.2671 12 6 1.7855 -3.7931 -3.4577 13 6 0.6091 -4.6246 -2.9064 14 8 -0.5916 -4.3188 -3.6185 15 6 0.9158 -6.0966 -3.0072 16 1 1.9413 -6.4353 -3.0128 17 6 -0.1127 -7.0109 -3.0923 18 7 0.1486 -8.2714 -3.3614 19 14 -1.8773 -6.4593 -2.8253 20 1 -2.5062 -6.1599 -4.1367 21 1 -2.6367 -7.5404 -2.1474 22 1 -1.8918 -5.2388 -1.9793 23 6 0.4776 -4.2021 -1.4274 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6949 2.1389 0.0004 28 1 4.1530 2.0852 0.0001 29 1 3.8641 -3.1860 0.0627 30 1 5.2966 -2.3136 -0.0361 31 1 0.6027 -2.4365 0.6336 32 1 2.1474 -3.2861 0.3883 33 1 3.0953 -3.4266 -1.7560 34 1 2.5630 -1.9441 -2.6079 35 1 2.5857 -4.4496 -3.7996 36 1 1.4476 -3.1529 -4.2726 37 1 -0.5243 -4.4440 -4.5750 38 1 -0.5750 -8.9146 -3.4216 39 1 -0.5719 -4.1615 -1.1354 40 1 1.0235 -4.8929 -0.7848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895078226.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:31 Heat of formation + Delta-G solvation = -0.265724 kcal Electronic energy + Delta-G solvation = -22370.324203 eV Core-core repulsion = 19184.987090 eV Total energy + Delta-G solvation = -3185.337113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.49726 -38.52736 -35.67006 -34.95558 -33.54797 -32.29450 -30.73573 -28.97644 -28.22556 -27.71061 -25.67411 -23.91959 -22.03686 -21.63135 -20.25478 -19.47254 -17.82334 -17.41003 -16.86673 -15.78563 -15.26610 -15.07085 -14.97286 -14.55776 -14.39336 -13.93656 -13.69689 -13.54131 -12.96193 -12.85552 -12.58813 -12.48613 -12.31065 -11.88680 -11.63427 -11.28912 -11.17802 -11.06686 -10.83532 -10.59704 -10.47560 -10.12123 -9.95436 -9.35734 -9.23349 -9.11959 -8.56184 -8.43110 -8.00389 -7.66571 -6.17441 -4.27787 1.33291 1.55865 3.47195 3.53932 3.56015 3.73400 3.93153 4.53130 4.59127 4.65242 4.87067 4.99288 5.10155 5.12000 5.27382 5.36879 5.48504 5.52269 5.62770 5.67340 5.70327 5.78792 5.94083 5.99364 6.09996 6.22054 6.24759 6.34156 6.55182 6.62816 6.64596 6.73978 6.79730 7.07270 7.22898 7.29282 7.49820 7.51372 7.65837 8.18036 8.30308 8.72083 8.87878 9.46389 10.91638 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029246 B = 0.005173 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.154634 B = 5411.801591 C = 5865.276763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.019 3.981 3 C -0.240 4.240 4 C 0.142 3.858 5 N -0.554 5.554 6 C 0.413 3.587 7 N -0.852 5.852 8 C -0.193 4.193 9 C 0.093 3.907 10 N -0.504 5.504 11 C 0.044 3.956 12 C -0.142 4.142 13 C 0.228 3.772 14 O -0.561 6.561 15 C -0.556 4.556 16 H 0.075 0.925 17 C 0.074 3.926 18 N -0.891 5.891 19 Si 0.941 3.059 20 H -0.293 1.293 21 H -0.326 1.326 22 H -0.260 1.260 23 C 0.042 3.958 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.127 0.873 28 H 0.150 0.850 29 H 0.408 0.592 30 H 0.401 0.599 31 H 0.082 0.918 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.366 0.634 38 H 0.265 0.735 39 H 0.080 0.920 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.851 15.592 6.825 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.011 3.989 3 C -0.263 4.263 4 C -0.015 4.015 5 N -0.272 5.272 6 C 0.175 3.825 7 N -0.398 5.398 8 C -0.200 4.200 9 C -0.035 4.035 10 N -0.229 5.229 11 C -0.084 4.084 12 C -0.181 4.181 13 C 0.187 3.813 14 O -0.368 6.368 15 C -0.593 4.593 16 H 0.093 0.907 17 C -0.131 4.131 18 N -0.527 5.527 19 Si 0.775 3.225 20 H -0.220 1.220 21 H -0.257 1.257 22 H -0.186 1.186 23 C -0.085 4.085 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.109 0.891 27 H 0.145 0.855 28 H 0.168 0.832 29 H 0.241 0.759 30 H 0.230 0.770 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.213 0.787 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.100 15.964 7.237 18.000 hybrid contribution -0.626 -0.912 -0.165 1.118 sum 3.474 15.052 7.072 16.990 Atomic orbital electron populations 1.20909 0.90379 1.04363 1.02288 1.19908 0.96502 0.91560 0.90967 1.21677 0.95273 0.98300 1.11001 1.22257 0.91659 0.94642 0.92911 1.67158 1.40630 0.97373 1.22048 1.18141 0.87732 0.86675 0.89906 1.42496 1.09620 1.04816 1.82855 1.19915 0.91996 0.96157 1.11936 1.20959 0.98203 0.91957 0.92431 1.65566 1.23379 1.28277 1.05637 1.22992 0.91937 0.98900 0.94589 1.23064 1.00369 0.97732 0.96928 1.19773 0.80542 0.93383 0.87557 1.86203 1.38183 1.89795 1.22577 1.21400 0.95257 0.88716 1.53974 0.90651 1.25143 1.00882 0.94518 0.92563 1.69996 1.33540 1.03014 1.46108 0.85822 0.81988 0.76039 0.78616 1.22008 1.25712 1.18598 1.23584 0.99901 0.86594 0.98444 0.91124 0.91463 0.89069 0.85519 0.83237 0.75915 0.77019 0.89927 0.94810 0.94405 0.91889 0.91172 0.92154 0.78714 0.92583 0.90221 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.33 36.01 0.34 -1.09 16 2 C 0.02 0.25 5.91 -104.36 -0.62 -0.37 16 3 C -0.24 -2.81 9.81 -39.42 -0.39 -3.20 16 4 C 0.14 1.72 11.17 -17.57 -0.20 1.52 16 5 N -0.55 -7.84 10.39 -12.43 -0.13 -7.97 16 6 C 0.41 5.83 7.28 -155.02 -1.13 4.71 16 7 N -0.85 -10.26 8.10 31.13 0.25 -10.01 16 8 C -0.19 -2.74 4.62 -104.27 -0.48 -3.22 16 9 C 0.09 1.38 4.02 -4.98 -0.02 1.36 16 10 N -0.50 -8.79 5.02 -231.27 -1.16 -9.96 16 11 C 0.04 0.76 5.22 -2.09 -0.01 0.75 16 12 C -0.14 -2.76 6.40 -25.35 -0.16 -2.93 16 13 C 0.23 5.06 0.90 -90.40 -0.08 4.98 16 14 O -0.56 -12.45 8.36 -35.23 -0.29 -12.74 16 15 C -0.56 -14.73 8.56 -34.44 -0.29 -15.03 16 16 H 0.08 2.17 7.86 -52.49 -0.41 1.76 16 17 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 18 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 19 Si 0.94 23.30 25.14 -169.99 -4.27 19.03 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 21 H -0.33 -8.28 7.11 56.52 0.40 -7.88 16 22 H -0.26 -6.31 4.90 56.52 0.28 -6.03 16 23 C 0.04 0.86 5.27 -2.19 -0.01 0.85 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.09 1.24 6.61 -51.93 -0.34 0.90 16 27 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.15 1.34 8.06 -52.48 -0.42 0.91 16 29 H 0.41 4.81 5.51 -40.82 -0.22 4.58 16 30 H 0.40 4.21 8.95 -40.82 -0.37 3.84 16 31 H 0.08 1.16 7.26 -51.92 -0.38 0.79 16 32 H 0.03 0.48 5.97 -51.93 -0.31 0.17 16 33 H 0.04 0.62 5.97 -51.93 -0.31 0.31 16 34 H 0.06 1.10 7.98 -51.93 -0.41 0.68 16 35 H 0.07 1.40 7.57 -51.93 -0.39 1.00 16 36 H 0.06 1.11 7.98 -51.93 -0.41 0.70 16 37 H 0.37 7.21 9.03 45.56 0.41 7.62 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.08 1.72 6.41 -51.93 -0.33 1.39 16 40 H 0.05 1.13 7.61 -51.93 -0.40 0.74 16 LS Contribution 309.39 15.07 4.66 4.66 Total: -1.00 -31.18 309.39 -8.15 -39.33 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -4.83 Total: 13.08 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -3.15 Total: -9.73 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.26 Total: -53.63 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.29 Total: -12.74 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.27 Total: 19.03 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.18 -8.15 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895078226.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.066 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds