Wall clock time and date at job start Mon Mar 30 2020 01:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38878 * 120.74926 * 2 1 4 4 C 1.38028 * 119.32876 * 179.97438 * 3 2 1 5 5 N 1.31965 * 120.85665 * 0.02562 * 4 3 2 6 6 C 1.32398 * 121.62304 * 359.72669 * 5 4 3 7 7 N 1.39006 * 119.70706 * 180.28635 * 6 5 4 8 8 C 1.38299 * 120.74250 * 179.97438 * 2 1 3 9 9 C 1.50698 * 120.45685 * 359.97438 * 8 2 1 10 10 N 1.46898 * 109.47256 * 82.08034 * 9 8 2 11 11 C 1.48719 * 111.01699 * 59.19582 * 10 9 8 12 12 C 1.54377 * 104.51964 * 158.96741 * 11 10 9 13 13 C 1.54255 * 105.14662 * 336.26827 * 12 11 10 14 14 O 1.42903 * 110.32407 * 118.84828 * 13 12 11 15 15 C 1.50699 * 110.32341 * 240.94882 * 13 12 11 16 16 H 1.07996 * 119.99906 * 25.88374 * 15 13 12 17 17 C 1.37880 * 119.99806 * 205.87876 * 15 13 12 18 18 N 1.31517 * 119.99695 * 170.79390 * 17 15 13 19 19 Si 1.86794 * 120.00370 * 350.79510 * 17 15 13 20 20 H 1.48498 * 109.47386 * 94.92069 * 19 17 15 21 21 H 1.48499 * 109.47189 * 214.92275 * 19 17 15 22 22 H 1.48501 * 109.47217 * 334.92195 * 19 17 15 23 23 C 1.48555 * 111.00245 * 174.70601 * 10 9 8 24 24 H 1.09000 * 109.46792 * 270.02126 * 1 2 3 25 25 H 1.09000 * 109.46948 * 30.01616 * 1 2 3 26 26 H 1.09004 * 109.47389 * 150.01968 * 1 2 3 27 27 H 1.07997 * 120.33711 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.56940 * 179.97438 * 4 3 2 29 29 H 0.97003 * 120.00010 * 176.73481 * 7 6 5 30 30 H 0.96997 * 119.99691 * 356.73556 * 7 6 5 31 31 H 1.09008 * 109.46793 * 322.08024 * 9 8 2 32 32 H 1.08994 * 109.47608 * 202.08376 * 9 8 2 33 33 H 1.09004 * 110.38462 * 40.23747 * 11 10 9 34 34 H 1.09003 * 110.50585 * 277.75464 * 11 10 9 35 35 H 1.08997 * 110.32277 * 217.32295 * 12 11 10 36 36 H 1.08999 * 110.31930 * 95.21579 * 12 11 10 37 37 H 0.96704 * 114.00135 * 56.07070 * 14 13 12 38 38 H 0.96999 * 120.00010 * 180.02562 * 18 17 15 39 39 H 1.09003 * 110.41581 * 82.17580 * 23 10 9 40 40 H 1.09004 * 110.51437 * 319.79012 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1935 0.0000 4 6 3.5969 1.1593 0.0005 5 7 4.2455 0.0100 0.0005 6 6 3.6048 -1.1486 0.0054 7 7 4.3280 -2.3357 0.0113 8 6 2.2140 -1.1886 0.0005 9 6 1.4880 -2.5092 0.0017 10 7 1.0843 -2.8473 -1.3697 11 6 2.2668 -2.9362 -2.2671 12 6 1.7855 -3.7931 -3.4577 13 6 0.6091 -4.6246 -2.9064 14 8 -0.5916 -4.3188 -3.6185 15 6 0.9158 -6.0966 -3.0072 16 1 1.9413 -6.4353 -3.0128 17 6 -0.1127 -7.0109 -3.0923 18 7 0.1486 -8.2714 -3.3614 19 14 -1.8773 -6.4593 -2.8253 20 1 -2.5062 -6.1599 -4.1367 21 1 -2.6367 -7.5404 -2.1474 22 1 -1.8918 -5.2388 -1.9793 23 6 0.4776 -4.2021 -1.4274 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6949 2.1389 0.0004 28 1 4.1530 2.0852 0.0001 29 1 3.8641 -3.1860 0.0627 30 1 5.2966 -2.3136 -0.0361 31 1 0.6027 -2.4365 0.6336 32 1 2.1474 -3.2861 0.3883 33 1 3.0953 -3.4266 -1.7560 34 1 2.5630 -1.9441 -2.6079 35 1 2.5857 -4.4496 -3.7996 36 1 1.4476 -3.1529 -4.2726 37 1 -0.5243 -4.4440 -4.5750 38 1 -0.5750 -8.9146 -3.4216 39 1 -0.5719 -4.1615 -1.1354 40 1 1.0235 -4.8929 -0.7848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895078226.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:31 Heat of formation + Delta-G solvation = -24.733087 kcal Electronic energy + Delta-G solvation = -22371.385188 eV Core-core repulsion = 19184.987090 eV Total energy + Delta-G solvation = -3186.398098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.53094 -40.05031 -37.17550 -35.91239 -34.72863 -34.40861 -32.06150 -30.11923 -29.85395 -28.77501 -27.07332 -25.60230 -23.20521 -22.61326 -21.61538 -21.16059 -19.53383 -18.67873 -17.80924 -17.30455 -17.01759 -16.34106 -16.06545 -15.91365 -15.74002 -15.33791 -14.93246 -14.84159 -14.68740 -14.18095 -13.81988 -13.78691 -13.56048 -13.33482 -12.96488 -12.90141 -12.71011 -12.49622 -12.25521 -12.15967 -11.91531 -11.71982 -11.56364 -11.15228 -10.63373 -10.36481 -10.29224 -10.12776 -9.39441 -8.67028 -8.34205 -6.45676 0.36111 0.60706 1.48599 1.52411 1.75728 2.46569 2.62330 2.89164 3.00460 3.29278 3.55431 3.72315 3.94976 3.95239 3.99376 4.12418 4.17480 4.36647 4.42104 4.59396 4.62276 4.67419 4.79414 4.81745 4.87297 4.97075 4.99958 5.05975 5.11623 5.17383 5.33719 5.42771 5.45466 5.64239 5.83889 5.90966 6.09312 6.12127 6.32667 6.59796 6.61601 7.04630 7.34526 7.35426 8.78882 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029246 B = 0.005173 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.154634 B = 5411.801591 C = 5865.276763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.010 3.990 3 C -0.238 4.238 4 C 0.138 3.862 5 N -0.574 5.574 6 C 0.401 3.599 7 N -0.848 5.848 8 C -0.212 4.212 9 C 0.096 3.904 10 N -0.500 5.500 11 C 0.055 3.945 12 C -0.139 4.139 13 C 0.224 3.776 14 O -0.564 6.564 15 C -0.550 4.550 16 H 0.040 0.960 17 C 0.026 3.974 18 N -0.938 5.938 19 Si 0.999 3.001 20 H -0.287 1.287 21 H -0.336 1.336 22 H -0.251 1.251 23 C 0.049 3.951 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.155 0.845 28 H 0.180 0.820 29 H 0.408 0.592 30 H 0.407 0.593 31 H 0.089 0.911 32 H 0.038 0.962 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.376 0.624 38 H 0.266 0.734 39 H 0.071 0.929 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.425 18.433 7.412 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.002 3.998 3 C -0.261 4.261 4 C -0.019 4.019 5 N -0.293 5.293 6 C 0.163 3.837 7 N -0.394 5.394 8 C -0.219 4.219 9 C -0.032 4.032 10 N -0.224 5.224 11 C -0.073 4.073 12 C -0.177 4.177 13 C 0.183 3.817 14 O -0.372 6.372 15 C -0.588 4.588 16 H 0.059 0.941 17 C -0.174 4.174 18 N -0.577 5.577 19 Si 0.832 3.168 20 H -0.214 1.214 21 H -0.268 1.268 22 H -0.176 1.176 23 C -0.079 4.079 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.172 0.828 28 H 0.197 0.803 29 H 0.240 0.760 30 H 0.237 0.763 31 H 0.107 0.893 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.225 0.775 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.694 18.828 7.818 20.719 hybrid contribution -0.390 -1.724 -0.346 1.801 sum 3.304 17.104 7.473 18.955 Atomic orbital electron populations 1.20892 0.89433 1.04025 1.03174 1.20217 0.97353 0.91767 0.90446 1.21980 0.95266 0.98944 1.09903 1.22848 0.92338 0.95093 0.91580 1.67224 1.41261 0.97928 1.22886 1.18322 0.87965 0.87182 0.90207 1.42470 1.09958 1.04444 1.82554 1.19871 0.92117 0.96031 1.13904 1.20950 0.98756 0.92737 0.90748 1.65525 1.23582 1.25839 1.07440 1.22882 0.92035 0.98675 0.93700 1.22957 0.98908 0.97642 0.98195 1.19729 0.81758 0.91148 0.89045 1.86157 1.38054 1.89407 1.23614 1.21657 0.93493 0.91333 1.52274 0.94150 1.25853 1.04453 0.94395 0.92663 1.70107 1.34595 1.04335 1.48629 0.84880 0.77774 0.75434 0.78704 1.21355 1.26835 1.17560 1.23311 0.99644 0.88218 0.96713 0.89618 0.89933 0.91171 0.82772 0.80283 0.75953 0.76310 0.89264 0.94430 0.93741 0.91314 0.92248 0.90828 0.77517 0.92577 0.91028 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 9.33 71.24 0.66 -1.76 16 2 C 0.01 0.25 5.91 -19.70 -0.12 0.13 16 3 C -0.24 -4.79 9.81 22.37 0.22 -4.57 16 4 C 0.14 2.91 11.17 84.62 0.95 3.86 16 5 N -0.57 -15.04 10.39 -193.25 -2.01 -17.05 16 6 C 0.40 10.65 7.28 133.06 0.97 11.62 16 7 N -0.85 -19.48 8.10 -55.43 -0.45 -19.93 16 8 C -0.21 -5.61 4.62 -19.63 -0.09 -5.70 16 9 C 0.10 2.71 4.02 85.56 0.34 3.05 16 10 N -0.50 -16.63 5.02 -885.62 -4.45 -21.08 16 11 C 0.06 1.82 5.22 86.42 0.45 2.27 16 12 C -0.14 -5.23 6.40 31.49 0.20 -5.03 16 13 C 0.22 9.76 0.90 -10.65 -0.01 9.75 16 14 O -0.56 -24.06 8.36 -148.98 -1.25 -25.31 16 15 C -0.55 -29.54 8.56 25.60 0.22 -29.32 16 16 H 0.04 2.41 7.86 -2.91 -0.02 2.39 16 17 C 0.03 1.46 5.45 84.65 0.46 1.92 16 18 N -0.94 -57.08 13.96 21.45 0.30 -56.78 16 19 Si 1.00 48.07 25.14 68.60 1.72 49.79 16 20 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.34 -16.65 7.11 99.48 0.71 -15.94 16 22 H -0.25 -11.55 4.90 99.48 0.49 -11.07 16 23 C 0.05 1.96 5.27 86.45 0.46 2.41 16 24 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.08 1.41 8.10 -2.39 -0.02 1.39 16 26 H 0.07 1.75 6.61 -2.38 -0.02 1.74 16 27 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 28 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.41 9.25 5.51 -92.71 -0.51 8.74 16 30 H 0.41 8.14 8.95 -92.71 -0.83 7.31 16 31 H 0.09 2.37 7.26 -2.38 -0.02 2.35 16 32 H 0.04 1.03 5.97 -2.39 -0.01 1.01 16 33 H 0.04 1.41 5.97 -2.38 -0.01 1.40 16 34 H 0.07 2.24 7.98 -2.39 -0.02 2.22 16 35 H 0.06 2.35 7.57 -2.39 -0.02 2.33 16 36 H 0.07 2.57 7.98 -2.39 -0.02 2.55 16 37 H 0.38 14.17 9.03 -74.05 -0.67 13.50 16 38 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.07 2.99 6.41 -2.39 -0.02 2.97 16 40 H 0.05 1.90 7.61 -2.38 -0.02 1.88 16 Total: -1.00 -66.44 309.39 -2.55 -68.99 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: -1.14 Total: 32.73 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 4.71 Total: -11.37 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -6.60 Total: -114.83 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -1.25 Total: -25.31 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 1.72 Total: 49.79 kcal Total: -66.44 -2.55 -68.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895078226.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.260 kcal (2) G-P(sol) polarization free energy of solvation -66.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds