Wall clock time and date at job start Mon Mar 30 2020 02:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38043 * 126.29504 * 2 1 4 4 C 1.47430 * 126.41479 * 359.97438 * 3 2 1 5 5 O 1.21612 * 119.99623 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00463 * 179.97438 * 4 3 2 7 7 C 1.46495 * 120.00156 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.47030 * 180.02562 * 7 6 4 9 9 H 1.09001 * 115.54793 * 330.58351 * 8 7 6 10 10 C 1.52996 * 117.49888 * 116.25902 * 8 7 6 11 11 C 1.53003 * 117.49907 * 184.91587 * 8 7 6 12 12 H 1.09002 * 117.49350 * 0.02562 * 11 8 7 13 13 C 1.52999 * 117.50065 * 145.01766 * 11 8 7 14 14 C 1.41286 * 107.17542 * 180.02562 * 3 2 1 15 15 N 1.30453 * 108.01952 * 359.74645 * 14 3 2 16 16 N 1.34259 * 126.29343 * 180.02562 * 2 1 3 17 17 C 1.46507 * 125.74960 * 359.96045 * 16 2 1 18 18 C 1.50697 * 109.47006 * 90.00016 * 17 16 2 19 19 H 1.07991 * 120.00449 * 359.72165 * 18 17 16 20 20 C 1.37885 * 119.99686 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.72095 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.72528 * 20 18 17 23 23 H 1.48493 * 109.47326 * 90.00142 * 22 20 18 24 24 H 1.48506 * 109.46545 * 209.99892 * 22 20 18 25 25 H 1.48498 * 109.47210 * 329.99603 * 22 20 18 26 26 H 1.09001 * 109.47403 * 269.97799 * 1 2 3 27 27 H 1.09003 * 109.47072 * 29.97663 * 1 2 3 28 28 H 1.09001 * 109.47649 * 149.97162 * 1 2 3 29 29 H 0.96998 * 119.99776 * 0.02562 * 6 4 3 30 30 H 1.08998 * 109.47447 * 300.00469 * 7 6 4 31 31 H 1.09003 * 109.46942 * 60.00564 * 7 6 4 32 32 H 1.08997 * 117.49599 * 214.98148 * 10 8 7 33 33 H 1.09005 * 117.49981 * 359.96810 * 10 8 7 34 34 H 1.09008 * 109.46648 * 60.00291 * 13 11 8 35 35 H 1.09000 * 109.47288 * 179.97438 * 13 11 8 36 36 H 1.08994 * 109.47333 * 300.00281 * 13 11 8 37 37 H 1.07997 * 125.99268 * 179.97438 * 14 3 2 38 38 H 1.08998 * 109.47049 * 329.99444 * 17 16 2 39 39 H 1.09001 * 109.46896 * 209.99715 * 17 16 2 40 40 H 0.97000 * 119.99651 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6995 2.7878 -0.0006 6 7 2.8000 3.5107 0.0001 7 6 2.3645 4.9094 0.0001 8 6 3.5902 5.8252 0.0002 9 1 4.4795 5.4202 0.4832 10 6 3.7968 6.7290 -1.2168 11 6 3.3469 7.3312 0.1165 12 1 2.3136 7.6696 0.1934 13 6 4.3707 8.1537 0.9015 14 6 3.6590 0.6498 -0.0006 15 7 3.6339 -0.6545 0.0045 16 7 2.3016 -1.0821 -0.0005 17 6 1.8499 -2.4758 -0.0003 18 6 1.6943 -2.9536 -1.4210 19 1 1.9058 -2.2847 -2.2420 20 6 1.2767 -4.2434 -1.6727 21 7 1.0196 -5.0582 -0.6730 22 14 1.0764 -4.8332 -3.4338 23 1 2.3556 -5.4195 -3.9080 24 1 0.0081 -5.8632 -3.4922 25 1 0.7059 -3.6861 -4.3010 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8897 -0.5143 29 1 3.7462 3.2973 0.0005 30 1 1.7662 5.1038 -0.8900 31 1 1.7655 5.1034 0.8899 32 1 4.8221 6.9190 -1.5343 33 1 3.0598 6.6709 -2.0179 34 1 5.3507 8.0556 0.4343 35 1 4.0718 9.2020 0.9012 36 1 4.4193 7.7897 1.9277 37 1 4.5448 1.2675 -0.0012 38 1 0.8916 -2.5471 0.5142 39 1 2.5849 -3.0958 0.5131 40 1 0.7262 -5.9657 -0.8501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895722806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:04 Heat of formation + Delta-G solvation = 40.293326 kcal Electronic energy + Delta-G solvation = -20660.445210 eV Core-core repulsion = 17476.866869 eV Total energy + Delta-G solvation = -3183.578341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.75753 -39.08543 -37.91689 -34.24132 -33.80909 -32.04956 -31.14040 -29.44373 -27.72223 -26.75374 -25.83578 -23.37930 -22.00890 -21.38246 -20.85242 -19.67407 -18.92427 -17.10823 -16.76606 -16.04562 -15.22953 -15.19056 -14.79008 -14.49238 -14.42773 -14.04946 -13.74251 -13.44650 -13.05387 -12.86415 -12.57932 -12.50667 -12.38738 -12.04521 -11.78078 -11.70829 -11.55828 -11.44681 -11.11379 -10.89224 -10.38236 -10.35111 -10.26135 -10.10212 -9.93023 -9.35124 -8.89287 -8.70904 -8.56737 -7.89115 -6.33344 -4.41264 2.21571 2.81401 3.14268 3.18711 3.25046 3.29400 3.41538 3.66558 3.95667 4.24691 4.36249 4.53651 4.64069 4.95395 4.99825 5.03391 5.13772 5.27124 5.34431 5.45082 5.51663 5.56023 5.64176 5.68267 5.72257 5.79885 5.91090 5.97633 6.03312 6.11768 6.48391 6.60640 6.67852 6.80343 6.90864 7.17903 7.56864 7.77227 7.77919 7.81719 8.39557 8.63349 8.66142 9.25702 10.74812 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035143 B = 0.003074 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.563485 B = 9105.080193 C = 9134.158715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.165 3.835 3 C -0.333 4.333 4 C 0.603 3.397 5 O -0.558 6.558 6 N -0.733 5.733 7 C 0.155 3.845 8 C -0.164 4.164 9 H 0.110 0.890 10 C -0.173 4.173 11 C -0.147 4.147 12 H 0.106 0.894 13 C -0.123 4.123 14 C 0.057 3.943 15 N -0.296 5.296 16 N -0.314 5.314 17 C 0.251 3.749 18 C -0.541 4.541 19 H 0.065 0.935 20 C 0.067 3.933 21 N -0.889 5.889 22 Si 0.908 3.092 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.271 1.271 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.398 0.602 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.175 0.825 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.649 20.535 2.302 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.028 3.972 3 C -0.348 4.348 4 C 0.393 3.607 5 O -0.437 6.437 6 N -0.385 5.385 7 C 0.032 3.968 8 C -0.183 4.183 9 H 0.128 0.872 10 C -0.210 4.210 11 C -0.166 4.166 12 H 0.124 0.876 13 C -0.180 4.180 14 C -0.130 4.130 15 N -0.116 5.116 16 N -0.091 5.091 17 C 0.134 3.866 18 C -0.579 4.579 19 H 0.084 0.916 20 C -0.137 4.137 21 N -0.527 5.527 22 Si 0.735 3.265 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.196 1.196 26 H 0.095 0.905 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.232 0.768 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.192 0.808 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.415 19.273 2.361 19.913 hybrid contribution 0.083 0.143 -0.942 0.957 sum 4.499 19.416 1.419 19.980 Atomic orbital electron populations 1.20612 0.86863 1.04840 1.03259 1.21476 0.94967 0.86508 0.94238 1.19683 0.93154 0.92528 1.29434 1.17313 0.84990 0.83925 0.74438 1.90690 1.16749 1.84521 1.51767 1.45691 1.09800 1.05309 1.77701 1.20762 0.94298 0.79700 1.02074 1.22591 1.00125 0.92083 1.03469 0.87197 1.23268 1.02618 1.03572 0.91507 1.22391 1.00724 0.93749 0.99732 0.87573 1.21370 0.97611 0.99302 0.99730 1.23713 0.96333 0.92617 1.00323 1.77129 0.98663 1.12277 1.23545 1.49370 1.02472 1.08298 1.48992 1.19850 0.96415 0.70937 0.99420 1.21259 1.47506 0.98095 0.91037 0.91643 1.24931 0.94443 0.95995 0.98310 1.69917 1.44579 1.07070 1.31119 0.86319 0.78094 0.78637 0.83465 1.20248 1.20782 1.19574 0.90520 0.88627 0.89916 0.76777 0.91616 0.91383 0.88679 0.88538 0.92524 0.92096 0.92076 0.80801 0.92571 0.92491 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 9.34 36.00 0.34 -1.46 16 2 C 0.17 3.42 7.01 -81.61 -0.57 2.85 16 3 C -0.33 -6.18 6.13 -105.07 -0.64 -6.82 16 4 C 0.60 10.23 7.81 -12.52 -0.10 10.13 16 5 O -0.56 -10.88 14.84 5.27 0.08 -10.80 16 6 N -0.73 -9.19 5.55 -61.38 -0.34 -9.53 16 7 C 0.16 1.68 5.96 -4.04 -0.02 1.66 16 8 C -0.16 -1.33 5.57 -90.62 -0.50 -1.83 16 9 H 0.11 0.81 8.04 -51.93 -0.42 0.40 16 10 C -0.17 -1.28 9.82 -26.70 -0.26 -1.54 16 11 C -0.15 -1.06 6.13 -90.58 -0.56 -1.61 16 12 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 13 C -0.12 -0.74 10.19 37.16 0.38 -0.36 16 14 C 0.06 1.00 11.50 -16.98 -0.20 0.81 16 15 N -0.30 -6.42 12.50 30.86 0.39 -6.04 16 16 N -0.31 -7.19 3.56 -57.77 -0.21 -7.39 16 17 C 0.25 6.29 5.78 -5.19 -0.03 6.26 16 18 C -0.54 -14.63 9.39 -34.44 -0.32 -14.96 16 19 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 20 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 21 N -0.89 -24.66 13.29 55.43 0.74 -23.92 16 22 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.10 1.74 6.50 -51.93 -0.34 1.40 16 28 H 0.08 1.57 7.70 -51.93 -0.40 1.17 16 29 H 0.40 4.03 7.36 -40.82 -0.30 3.73 16 30 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.63 8.05 -51.93 -0.42 0.21 16 33 H 0.10 0.73 8.03 -51.93 -0.42 0.32 16 34 H 0.06 0.32 7.90 -51.92 -0.41 -0.09 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.18 2.18 7.50 -52.49 -0.39 1.79 16 38 H 0.06 1.40 7.62 -51.93 -0.40 1.00 16 39 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 342.22 15.07 5.16 5.16 Total: -1.00 -30.89 342.22 -7.78 -38.67 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.98 Total: 3.19 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.59 Total: -5.17 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.58 Total: -46.89 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.89 -7.78 -38.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895722806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.959 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds