Wall clock time and date at job start Mon Mar 30 2020 02:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38043 * 126.29504 * 2 1 4 4 C 1.47430 * 126.41479 * 359.97438 * 3 2 1 5 5 O 1.21612 * 119.99623 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00463 * 179.97438 * 4 3 2 7 7 C 1.46495 * 120.00156 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.47030 * 180.02562 * 7 6 4 9 9 H 1.09001 * 115.54793 * 330.58351 * 8 7 6 10 10 C 1.52996 * 117.49888 * 116.25902 * 8 7 6 11 11 C 1.53003 * 117.49907 * 184.91587 * 8 7 6 12 12 H 1.09002 * 117.49350 * 0.02562 * 11 8 7 13 13 C 1.52999 * 117.50065 * 145.01766 * 11 8 7 14 14 C 1.41286 * 107.17542 * 180.02562 * 3 2 1 15 15 N 1.30453 * 108.01952 * 359.74645 * 14 3 2 16 16 N 1.34259 * 126.29343 * 180.02562 * 2 1 3 17 17 C 1.46507 * 125.74960 * 359.96045 * 16 2 1 18 18 C 1.50697 * 109.47006 * 90.00016 * 17 16 2 19 19 H 1.07991 * 120.00449 * 359.72165 * 18 17 16 20 20 C 1.37885 * 119.99686 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.72095 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.72528 * 20 18 17 23 23 H 1.48493 * 109.47326 * 90.00142 * 22 20 18 24 24 H 1.48506 * 109.46545 * 209.99892 * 22 20 18 25 25 H 1.48498 * 109.47210 * 329.99603 * 22 20 18 26 26 H 1.09001 * 109.47403 * 269.97799 * 1 2 3 27 27 H 1.09003 * 109.47072 * 29.97663 * 1 2 3 28 28 H 1.09001 * 109.47649 * 149.97162 * 1 2 3 29 29 H 0.96998 * 119.99776 * 0.02562 * 6 4 3 30 30 H 1.08998 * 109.47447 * 300.00469 * 7 6 4 31 31 H 1.09003 * 109.46942 * 60.00564 * 7 6 4 32 32 H 1.08997 * 117.49599 * 214.98148 * 10 8 7 33 33 H 1.09005 * 117.49981 * 359.96810 * 10 8 7 34 34 H 1.09008 * 109.46648 * 60.00291 * 13 11 8 35 35 H 1.09000 * 109.47288 * 179.97438 * 13 11 8 36 36 H 1.08994 * 109.47333 * 300.00281 * 13 11 8 37 37 H 1.07997 * 125.99268 * 179.97438 * 14 3 2 38 38 H 1.08998 * 109.47049 * 329.99444 * 17 16 2 39 39 H 1.09001 * 109.46896 * 209.99715 * 17 16 2 40 40 H 0.97000 * 119.99651 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6995 2.7878 -0.0006 6 7 2.8000 3.5107 0.0001 7 6 2.3645 4.9094 0.0001 8 6 3.5902 5.8252 0.0002 9 1 4.4795 5.4202 0.4832 10 6 3.7968 6.7290 -1.2168 11 6 3.3469 7.3312 0.1165 12 1 2.3136 7.6696 0.1934 13 6 4.3707 8.1537 0.9015 14 6 3.6590 0.6498 -0.0006 15 7 3.6339 -0.6545 0.0045 16 7 2.3016 -1.0821 -0.0005 17 6 1.8499 -2.4758 -0.0003 18 6 1.6943 -2.9536 -1.4210 19 1 1.9058 -2.2847 -2.2420 20 6 1.2767 -4.2434 -1.6727 21 7 1.0196 -5.0582 -0.6730 22 14 1.0764 -4.8332 -3.4338 23 1 2.3556 -5.4195 -3.9080 24 1 0.0081 -5.8632 -3.4922 25 1 0.7059 -3.6861 -4.3010 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8897 -0.5143 29 1 3.7462 3.2973 0.0005 30 1 1.7662 5.1038 -0.8900 31 1 1.7655 5.1034 0.8899 32 1 4.8221 6.9190 -1.5343 33 1 3.0598 6.6709 -2.0179 34 1 5.3507 8.0556 0.4343 35 1 4.0718 9.2020 0.9012 36 1 4.4193 7.7897 1.9277 37 1 4.5448 1.2675 -0.0012 38 1 0.8916 -2.5471 0.5142 39 1 2.5849 -3.0958 0.5131 40 1 0.7262 -5.9657 -0.8501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895722806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:04 Heat of formation + Delta-G solvation = 21.218203 kcal Electronic energy + Delta-G solvation = -20661.272369 eV Core-core repulsion = 17476.866869 eV Total energy + Delta-G solvation = -3184.405500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.30354 -40.24002 -38.76182 -35.83813 -35.29280 -33.78668 -32.74662 -30.30116 -29.13404 -28.31886 -26.93914 -25.25803 -23.33480 -22.13622 -21.62904 -21.04046 -20.34995 -18.86620 -18.41570 -17.15671 -16.76819 -16.49650 -16.24474 -15.85247 -15.58333 -15.17868 -15.00859 -14.49622 -14.29798 -14.09639 -13.91659 -13.80606 -13.63412 -13.58914 -13.09120 -13.02259 -12.95623 -12.72105 -12.31675 -12.28828 -12.19175 -11.85982 -11.73861 -11.01540 -10.95694 -10.76899 -10.60089 -10.26003 -10.03417 -9.42487 -8.38454 -6.55019 0.68416 1.32905 1.37196 1.38795 1.48782 1.66061 2.30303 2.34657 2.55542 2.89346 2.93699 3.70446 3.75063 3.76709 3.94626 4.04949 4.14995 4.23563 4.31202 4.49769 4.53629 4.65326 4.68952 4.78736 4.80877 4.90576 4.97168 4.99431 5.01677 5.07901 5.16596 5.24797 5.28272 5.47697 5.48535 5.58243 5.68936 5.74307 6.04638 6.54256 6.65418 6.85489 7.16163 7.37829 8.69439 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035143 B = 0.003074 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.563485 B = 9105.080193 C = 9134.158715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.144 3.856 3 C -0.331 4.331 4 C 0.603 3.397 5 O -0.587 6.587 6 N -0.712 5.712 7 C 0.156 3.844 8 C -0.166 4.166 9 H 0.123 0.877 10 C -0.171 4.171 11 C -0.145 4.145 12 H 0.104 0.896 13 C -0.122 4.122 14 C 0.080 3.920 15 N -0.337 5.337 16 N -0.339 5.339 17 C 0.267 3.733 18 C -0.556 4.556 19 H 0.051 0.949 20 C 0.024 3.976 21 N -0.916 5.916 22 Si 0.972 3.028 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.270 1.270 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.413 0.587 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.228 0.772 38 H 0.050 0.950 39 H 0.032 0.968 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.768 22.369 1.683 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.009 3.991 3 C -0.347 4.347 4 C 0.392 3.608 5 O -0.469 6.469 6 N -0.364 5.364 7 C 0.033 3.967 8 C -0.185 4.185 9 H 0.141 0.859 10 C -0.208 4.208 11 C -0.163 4.163 12 H 0.122 0.878 13 C -0.179 4.179 14 C -0.107 4.107 15 N -0.156 5.156 16 N -0.116 5.116 17 C 0.149 3.851 18 C -0.595 4.595 19 H 0.070 0.930 20 C -0.178 4.178 21 N -0.554 5.554 22 Si 0.796 3.204 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.194 1.194 26 H 0.109 0.891 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.250 0.750 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.244 0.756 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.569 21.143 1.751 21.934 hybrid contribution -0.231 -0.276 -0.707 0.794 sum 5.339 20.867 1.044 21.564 Atomic orbital electron populations 1.20578 0.85964 1.04202 1.04051 1.21972 0.95949 0.86761 0.94454 1.19965 0.93370 0.93026 1.28300 1.17155 0.85084 0.83936 0.74628 1.90678 1.18088 1.84796 1.53294 1.45543 1.09957 1.05289 1.75618 1.20831 0.95614 0.78922 1.01349 1.22498 0.99256 0.92101 1.04605 0.85912 1.23327 1.03208 1.02952 0.91307 1.22481 1.01124 0.93035 0.99691 0.87751 1.21384 0.97482 0.99468 0.99586 1.24514 0.97625 0.91581 0.96968 1.77085 0.98316 1.14455 1.25764 1.49112 1.03393 1.07742 1.51355 1.19364 0.95271 0.72362 0.98139 1.21397 1.48054 0.98438 0.91564 0.93029 1.25741 0.93804 0.95926 1.02317 1.69998 1.44883 1.07503 1.33047 0.85342 0.78370 0.78207 0.78529 1.19748 1.19570 1.19442 0.89051 0.88363 0.91180 0.75041 0.92497 0.92055 0.87518 0.88985 0.91953 0.91422 0.91967 0.75621 0.93226 0.94994 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.37 9.34 71.23 0.67 -2.70 16 2 C 0.14 6.02 7.01 42.14 0.30 6.32 16 3 C -0.33 -11.92 6.13 -20.15 -0.12 -12.05 16 4 C 0.60 19.52 7.81 86.66 0.68 20.20 16 5 O -0.59 -22.44 14.84 -4.07 -0.06 -22.50 16 6 N -0.71 -16.12 5.55 -466.36 -2.59 -18.70 16 7 C 0.16 3.08 5.96 86.38 0.51 3.60 16 8 C -0.17 -2.25 5.57 -10.79 -0.06 -2.31 16 9 H 0.12 1.38 8.04 -2.39 -0.02 1.36 16 10 C -0.17 -2.10 9.82 30.62 0.30 -1.80 16 11 C -0.14 -1.74 6.13 -10.77 -0.07 -1.81 16 12 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 13 C -0.12 -1.15 10.19 71.98 0.73 -0.42 16 14 C 0.08 2.65 11.50 85.65 0.99 3.63 16 15 N -0.34 -14.52 12.50 -56.28 -0.70 -15.22 16 16 N -0.34 -15.82 3.56 -336.70 -1.20 -17.02 16 17 C 0.27 13.93 5.78 85.63 0.50 14.42 16 18 C -0.56 -30.88 9.39 25.60 0.24 -30.64 16 19 H 0.05 2.94 7.81 -2.92 -0.02 2.92 16 20 C 0.02 1.28 5.46 84.66 0.46 1.74 16 21 N -0.92 -51.49 13.29 21.45 0.28 -51.20 16 22 Si 0.97 42.83 29.54 68.60 2.03 44.85 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 27 H 0.10 3.60 6.50 -2.39 -0.02 3.59 16 28 H 0.07 2.76 7.70 -2.39 -0.02 2.74 16 29 H 0.41 6.87 7.36 -92.71 -0.68 6.19 16 30 H 0.06 1.25 7.87 -2.39 -0.02 1.23 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.11 1.08 8.05 -2.39 -0.02 1.06 16 33 H 0.09 1.22 8.03 -2.38 -0.02 1.20 16 34 H 0.06 0.52 7.90 -2.38 -0.02 0.51 16 35 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 37 H 0.23 4.70 7.50 -2.91 -0.02 4.68 16 38 H 0.05 2.59 7.62 -2.39 -0.02 2.57 16 39 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -67.38 342.22 3.24 -64.14 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.36 Total: 17.46 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 5.12 Total: -1.82 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -4.20 Total: -102.14 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.06 Total: -22.50 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -67.38 3.24 -64.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895722806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.361 kcal (2) G-P(sol) polarization free energy of solvation -67.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds