Wall clock time and date at job start Mon Mar 30 2020 02:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38049 * 126.29196 * 2 1 4 4 C 1.47435 * 126.41008 * 0.02562 * 3 2 1 5 5 O 1.21595 * 120.00181 * 0.21897 * 4 3 2 6 6 N 1.34776 * 119.99721 * 180.21497 * 4 3 2 7 7 C 1.46499 * 119.99930 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.46696 * 180.02562 * 7 6 4 9 9 H 1.09000 * 115.55577 * 29.28000 * 8 7 6 10 10 C 1.53005 * 117.49893 * 243.60259 * 8 7 6 11 11 C 1.53005 * 60.00137 * 252.51417 * 10 8 7 12 12 H 1.09000 * 117.49975 * 107.49075 * 11 10 8 13 13 C 1.53001 * 117.49789 * 252.51020 * 11 10 8 14 14 C 1.41282 * 107.17290 * 180.17529 * 3 2 1 15 15 N 1.30449 * 108.02396 * 359.57349 * 14 3 2 16 16 N 1.34254 * 126.29580 * 179.70833 * 2 1 3 17 17 C 1.46508 * 125.75138 * 359.97438 * 16 2 1 18 18 C 1.50698 * 109.46733 * 269.97450 * 17 16 2 19 19 H 1.07993 * 120.00556 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99505 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00190 * 180.02562 * 20 18 17 23 23 H 1.48489 * 109.47319 * 59.99547 * 22 20 18 24 24 H 1.48502 * 109.47150 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46767 * 299.99410 * 22 20 18 26 26 H 1.09002 * 109.47159 * 270.28673 * 1 2 3 27 27 H 1.08999 * 109.47402 * 30.29636 * 1 2 3 28 28 H 1.09004 * 109.46838 * 150.29226 * 1 2 3 29 29 H 0.97002 * 119.99811 * 0.02562 * 6 4 3 30 30 H 1.09001 * 109.46939 * 299.99913 * 7 6 4 31 31 H 1.08991 * 109.47379 * 60.00328 * 7 6 4 32 32 H 1.08999 * 117.49284 * 0.02562 * 10 8 7 33 33 H 1.08999 * 117.49704 * 145.02535 * 10 8 7 34 34 H 1.09001 * 109.47313 * 128.62502 * 13 11 10 35 35 H 1.09004 * 109.46470 * 248.62092 * 13 11 10 36 36 H 1.08993 * 109.47187 * 8.62135 * 13 11 10 37 37 H 1.08002 * 125.99189 * 179.84240 * 14 3 2 38 38 H 1.08998 * 109.47234 * 29.97266 * 17 16 2 39 39 H 1.08996 * 109.47203 * 149.97459 * 17 16 2 40 40 H 0.97000 * 119.99195 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8857 2.5204 0.0005 5 8 0.6995 2.7878 0.0051 6 7 2.7998 3.5108 -0.0039 7 6 2.3642 4.9095 -0.0028 8 6 3.5899 5.8252 -0.0092 9 1 4.4777 5.4192 -0.4940 10 6 3.8005 6.7323 1.2049 11 6 3.3461 7.3311 -0.1278 12 1 2.3125 7.6693 -0.2012 13 6 4.3671 8.1520 -0.9181 14 6 3.6590 0.6500 -0.0041 15 7 3.6341 -0.6543 0.0028 16 7 2.3017 -1.0820 0.0055 17 6 1.8501 -2.4758 0.0131 18 6 1.6964 -2.9461 1.4366 19 1 1.9138 -2.2744 2.2537 20 6 1.2793 -4.2345 1.6957 21 7 1.0151 -5.0528 0.7005 22 14 1.0881 -4.8174 3.4601 23 1 0.0871 -3.9695 4.1558 24 1 0.6317 -6.2305 3.4679 25 1 2.3944 -4.7158 4.1592 26 1 -0.3633 0.0051 1.0277 27 1 -0.3634 0.8873 -0.5184 28 1 -0.3633 -0.8926 -0.5093 29 1 3.7460 3.2974 -0.0078 30 1 1.7618 5.1031 -0.8904 31 1 1.7695 5.1042 0.8895 32 1 3.0660 6.6762 2.0083 33 1 4.8268 6.9232 1.5185 34 1 4.4120 7.7859 -1.9438 35 1 4.0678 9.2002 -0.9192 36 1 5.3487 8.0548 -0.4544 37 1 4.5449 1.2677 -0.0076 38 1 0.8911 -2.5498 -0.4995 39 1 2.5843 -3.0984 -0.4980 40 1 0.7220 -5.9593 0.8828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895722807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:07 Heat of formation + Delta-G solvation = 40.673297 kcal Electronic energy + Delta-G solvation = -20660.063275 eV Core-core repulsion = 17476.501411 eV Total energy + Delta-G solvation = -3183.561864 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.75961 -39.08775 -37.92065 -34.24215 -33.80580 -32.05708 -31.14085 -29.44361 -27.72352 -26.75020 -25.84131 -23.38675 -22.00869 -21.38175 -20.85319 -19.67182 -18.92165 -17.10927 -16.76429 -16.04965 -15.23553 -15.19433 -14.78386 -14.49952 -14.43761 -14.06242 -13.74928 -13.44528 -13.04115 -12.87645 -12.55990 -12.50303 -12.37776 -12.07408 -11.78030 -11.70759 -11.55584 -11.45266 -11.12772 -10.86415 -10.38618 -10.35447 -10.24931 -10.11389 -9.94597 -9.35531 -8.89225 -8.69960 -8.57375 -7.88833 -6.32840 -4.40651 2.21678 2.81557 3.14135 3.20625 3.24492 3.28350 3.41263 3.66388 3.95698 4.24961 4.36269 4.53801 4.64010 4.95391 5.00049 5.03653 5.13782 5.26707 5.34294 5.45020 5.51662 5.55943 5.64116 5.67700 5.72132 5.78559 5.90895 5.96610 6.03160 6.14904 6.44175 6.57500 6.66852 6.81585 6.91843 7.17676 7.56892 7.77220 7.78264 7.81696 8.39500 8.63323 8.66066 9.26091 10.75357 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035046 B = 0.003077 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.761153 B = 9098.168447 C = 9129.753588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.165 3.835 3 C -0.333 4.333 4 C 0.603 3.397 5 O -0.558 6.558 6 N -0.733 5.733 7 C 0.156 3.844 8 C -0.164 4.164 9 H 0.110 0.890 10 C -0.173 4.173 11 C -0.147 4.147 12 H 0.106 0.894 13 C -0.123 4.123 14 C 0.057 3.943 15 N -0.296 5.296 16 N -0.314 5.314 17 C 0.251 3.749 18 C -0.540 4.540 19 H 0.065 0.935 20 C 0.067 3.933 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.398 0.602 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.175 0.825 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.661 20.543 -2.459 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.028 3.972 3 C -0.348 4.348 4 C 0.393 3.607 5 O -0.437 6.437 6 N -0.385 5.385 7 C 0.032 3.968 8 C -0.183 4.183 9 H 0.128 0.872 10 C -0.210 4.210 11 C -0.166 4.166 12 H 0.124 0.876 13 C -0.180 4.180 14 C -0.130 4.130 15 N -0.116 5.116 16 N -0.091 5.091 17 C 0.134 3.866 18 C -0.579 4.579 19 H 0.083 0.917 20 C -0.137 4.137 21 N -0.527 5.527 22 Si 0.735 3.265 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.199 1.199 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.232 0.768 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.192 0.808 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.431 19.276 -2.507 19.937 hybrid contribution 0.079 0.146 0.989 1.003 sum 4.510 19.422 -1.517 19.996 Atomic orbital electron populations 1.20565 0.86819 1.03733 1.03925 1.21480 0.94961 0.86543 0.94253 1.19680 0.93133 0.92518 1.29486 1.17308 0.84988 0.83920 0.74441 1.90686 1.16754 1.84519 1.51758 1.45694 1.09802 1.05309 1.77707 1.20760 0.94299 0.79700 1.02073 1.22592 1.00131 0.92053 1.03497 0.87191 1.23260 1.02599 1.03564 0.91547 1.22383 1.00728 0.93776 0.99705 0.87575 1.21371 0.97631 0.99313 0.99699 1.23714 0.96334 0.92622 1.00301 1.77134 0.98632 1.12279 1.23561 1.49366 1.02482 1.08310 1.48966 1.19846 0.96404 0.70924 0.99409 1.21211 1.47518 0.98158 0.90981 0.91723 1.24926 0.94440 0.95960 0.98332 1.69908 1.44450 1.07060 1.31313 0.86375 0.78880 0.77725 0.83512 1.19840 1.20864 1.19909 0.89846 0.88852 0.90888 0.76777 0.91390 0.91607 0.88542 0.88679 0.92078 0.92097 0.92521 0.80792 0.92550 0.92528 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.56 36.01 0.34 -1.36 16 2 C 0.16 3.41 7.01 -81.60 -0.57 2.84 16 3 C -0.33 -6.18 6.13 -105.06 -0.64 -6.82 16 4 C 0.60 10.22 7.81 -12.52 -0.10 10.12 16 5 O -0.56 -10.87 14.85 5.28 0.08 -10.79 16 6 N -0.73 -9.18 5.55 -61.39 -0.34 -9.52 16 7 C 0.16 1.68 5.96 -4.04 -0.02 1.66 16 8 C -0.16 -1.33 5.57 -90.61 -0.50 -1.83 16 9 H 0.11 0.81 8.04 -51.93 -0.42 0.40 16 10 C -0.17 -1.28 9.82 -26.73 -0.26 -1.54 16 11 C -0.15 -1.06 6.13 -90.61 -0.56 -1.61 16 12 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 13 C -0.12 -0.74 10.19 37.16 0.38 -0.36 16 14 C 0.06 1.01 11.50 -16.98 -0.20 0.81 16 15 N -0.30 -6.43 12.50 30.86 0.39 -6.04 16 16 N -0.31 -7.19 3.56 -57.77 -0.21 -7.39 16 17 C 0.25 6.31 5.97 -5.19 -0.03 6.28 16 18 C -0.54 -14.66 9.39 -34.44 -0.32 -14.98 16 19 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 20 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 21 N -0.89 -24.71 13.29 55.43 0.74 -23.97 16 22 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.09 1.64 6.52 -51.93 -0.34 1.31 16 28 H 0.07 1.30 7.05 -51.93 -0.37 0.94 16 29 H 0.40 4.02 7.35 -40.82 -0.30 3.72 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.77 7.88 -51.93 -0.41 0.36 16 32 H 0.10 0.73 8.03 -51.93 -0.42 0.32 16 33 H 0.09 0.63 8.05 -51.93 -0.42 0.21 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.32 7.90 -51.93 -0.41 -0.09 16 37 H 0.18 2.18 7.50 -52.49 -0.39 1.79 16 38 H 0.06 1.40 7.01 -51.93 -0.36 1.04 16 39 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 341.39 15.07 5.14 5.14 Total: -1.00 -30.92 341.39 -7.72 -38.64 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.92 Total: 3.12 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -2.58 Total: -5.09 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.58 Total: -46.93 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.92 -7.72 -38.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895722807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.313 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds