Wall clock time and date at job start Mon Mar 30 2020 02:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38049 * 126.29196 * 2 1 4 4 C 1.47435 * 126.41008 * 0.02562 * 3 2 1 5 5 O 1.21595 * 120.00181 * 0.21897 * 4 3 2 6 6 N 1.34776 * 119.99721 * 180.21497 * 4 3 2 7 7 C 1.46499 * 119.99930 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.46696 * 180.02562 * 7 6 4 9 9 H 1.09000 * 115.55577 * 29.28000 * 8 7 6 10 10 C 1.53005 * 117.49893 * 243.60259 * 8 7 6 11 11 C 1.53005 * 60.00137 * 252.51417 * 10 8 7 12 12 H 1.09000 * 117.49975 * 107.49075 * 11 10 8 13 13 C 1.53001 * 117.49789 * 252.51020 * 11 10 8 14 14 C 1.41282 * 107.17290 * 180.17529 * 3 2 1 15 15 N 1.30449 * 108.02396 * 359.57349 * 14 3 2 16 16 N 1.34254 * 126.29580 * 179.70833 * 2 1 3 17 17 C 1.46508 * 125.75138 * 359.97438 * 16 2 1 18 18 C 1.50698 * 109.46733 * 269.97450 * 17 16 2 19 19 H 1.07993 * 120.00556 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99505 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00190 * 180.02562 * 20 18 17 23 23 H 1.48489 * 109.47319 * 59.99547 * 22 20 18 24 24 H 1.48502 * 109.47150 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46767 * 299.99410 * 22 20 18 26 26 H 1.09002 * 109.47159 * 270.28673 * 1 2 3 27 27 H 1.08999 * 109.47402 * 30.29636 * 1 2 3 28 28 H 1.09004 * 109.46838 * 150.29226 * 1 2 3 29 29 H 0.97002 * 119.99811 * 0.02562 * 6 4 3 30 30 H 1.09001 * 109.46939 * 299.99913 * 7 6 4 31 31 H 1.08991 * 109.47379 * 60.00328 * 7 6 4 32 32 H 1.08999 * 117.49284 * 0.02562 * 10 8 7 33 33 H 1.08999 * 117.49704 * 145.02535 * 10 8 7 34 34 H 1.09001 * 109.47313 * 128.62502 * 13 11 10 35 35 H 1.09004 * 109.46470 * 248.62092 * 13 11 10 36 36 H 1.08993 * 109.47187 * 8.62135 * 13 11 10 37 37 H 1.08002 * 125.99189 * 179.84240 * 14 3 2 38 38 H 1.08998 * 109.47234 * 29.97266 * 17 16 2 39 39 H 1.08996 * 109.47203 * 149.97459 * 17 16 2 40 40 H 0.97000 * 119.99195 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8857 2.5204 0.0005 5 8 0.6995 2.7878 0.0051 6 7 2.7998 3.5108 -0.0039 7 6 2.3642 4.9095 -0.0028 8 6 3.5899 5.8252 -0.0092 9 1 4.4777 5.4192 -0.4940 10 6 3.8005 6.7323 1.2049 11 6 3.3461 7.3311 -0.1278 12 1 2.3125 7.6693 -0.2012 13 6 4.3671 8.1520 -0.9181 14 6 3.6590 0.6500 -0.0041 15 7 3.6341 -0.6543 0.0028 16 7 2.3017 -1.0820 0.0055 17 6 1.8501 -2.4758 0.0131 18 6 1.6964 -2.9461 1.4366 19 1 1.9138 -2.2744 2.2537 20 6 1.2793 -4.2345 1.6957 21 7 1.0151 -5.0528 0.7005 22 14 1.0881 -4.8174 3.4601 23 1 0.0871 -3.9695 4.1558 24 1 0.6317 -6.2305 3.4679 25 1 2.3944 -4.7158 4.1592 26 1 -0.3633 0.0051 1.0277 27 1 -0.3634 0.8873 -0.5184 28 1 -0.3633 -0.8926 -0.5093 29 1 3.7460 3.2974 -0.0078 30 1 1.7618 5.1031 -0.8904 31 1 1.7695 5.1042 0.8895 32 1 3.0660 6.6762 2.0083 33 1 4.8268 6.9232 1.5185 34 1 4.4120 7.7859 -1.9438 35 1 4.0678 9.2002 -0.9192 36 1 5.3487 8.0548 -0.4544 37 1 4.5449 1.2677 -0.0076 38 1 0.8911 -2.5498 -0.4995 39 1 2.5843 -3.0984 -0.4980 40 1 0.7220 -5.9593 0.8828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895722807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:06 Heat of formation + Delta-G solvation = 21.571418 kcal Electronic energy + Delta-G solvation = -20660.891595 eV Core-core repulsion = 17476.501411 eV Total energy + Delta-G solvation = -3184.390184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.30553 -40.24217 -38.76525 -35.83521 -35.29368 -33.79346 -32.74830 -30.30150 -29.13331 -28.31741 -26.94472 -25.26483 -23.33511 -22.13526 -21.62855 -21.03753 -20.34917 -18.86178 -18.41989 -17.16190 -16.76991 -16.50598 -16.26101 -15.81898 -15.61566 -15.18411 -15.02127 -14.51301 -14.23677 -14.07158 -13.94682 -13.80554 -13.67971 -13.57325 -13.09384 -13.02756 -12.96660 -12.69250 -12.30446 -12.28797 -12.19116 -11.88228 -11.74088 -11.01871 -10.95335 -10.76224 -10.60517 -10.26810 -10.03253 -9.42301 -8.38136 -6.54628 0.68351 1.33065 1.38460 1.38972 1.47486 1.65501 2.30416 2.34615 2.55560 2.89361 2.94101 3.70518 3.74546 3.76564 3.94798 4.04913 4.14737 4.24400 4.31242 4.49727 4.51622 4.60915 4.69284 4.78386 4.81429 4.90147 4.97222 4.99405 5.01674 5.07405 5.17291 5.24811 5.28265 5.47725 5.48614 5.58241 5.68791 5.74511 6.04378 6.54094 6.65446 6.85360 7.16338 7.37867 8.69590 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035046 B = 0.003077 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.761153 B = 9098.168447 C = 9129.753588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.144 3.856 3 C -0.331 4.331 4 C 0.603 3.397 5 O -0.587 6.587 6 N -0.712 5.712 7 C 0.156 3.844 8 C -0.166 4.166 9 H 0.123 0.877 10 C -0.171 4.171 11 C -0.145 4.145 12 H 0.104 0.896 13 C -0.122 4.122 14 C 0.080 3.920 15 N -0.337 5.337 16 N -0.339 5.339 17 C 0.267 3.733 18 C -0.557 4.557 19 H 0.051 0.949 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.971 3.029 23 H -0.267 1.267 24 H -0.272 1.272 25 H -0.273 1.273 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.413 0.587 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.228 0.772 38 H 0.051 0.949 39 H 0.032 0.968 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.772 22.379 -1.767 23.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.008 3.992 3 C -0.347 4.347 4 C 0.392 3.608 5 O -0.469 6.469 6 N -0.364 5.364 7 C 0.033 3.967 8 C -0.185 4.185 9 H 0.141 0.859 10 C -0.208 4.208 11 C -0.163 4.163 12 H 0.122 0.878 13 C -0.179 4.179 14 C -0.107 4.107 15 N -0.156 5.156 16 N -0.116 5.116 17 C 0.148 3.852 18 C -0.595 4.595 19 H 0.070 0.930 20 C -0.178 4.178 21 N -0.554 5.554 22 Si 0.795 3.205 23 H -0.192 1.192 24 H -0.197 1.197 25 H -0.198 1.198 26 H 0.100 0.900 27 H 0.119 0.881 28 H 0.090 0.910 29 H 0.250 0.750 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.244 0.756 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.575 21.149 -1.824 21.947 hybrid contribution -0.229 -0.274 0.731 0.814 sum 5.346 20.875 -1.093 21.577 Atomic orbital electron populations 1.20542 0.85943 1.03988 1.03892 1.21971 0.95931 0.86789 0.94488 1.19966 0.93354 0.93022 1.28311 1.17150 0.85082 0.83930 0.74629 1.90674 1.18095 1.84795 1.53285 1.45547 1.09960 1.05289 1.75621 1.20829 0.95614 0.78921 1.01350 1.22499 0.99265 0.92070 1.04629 0.85902 1.23319 1.03188 1.02948 0.91349 1.22473 1.01125 0.93060 0.99667 0.87752 1.21384 0.97505 0.99480 0.99550 1.24515 0.97626 0.91583 0.96946 1.77090 0.98291 1.14463 1.25779 1.49109 1.03403 1.07756 1.51307 1.19366 0.95292 0.72354 0.98141 1.21364 1.48051 0.98512 0.91544 0.93026 1.25739 0.93800 0.95884 1.02360 1.69993 1.44751 1.07460 1.33235 0.85402 0.78836 0.77690 0.78581 1.19169 1.19713 1.19800 0.89967 0.88056 0.91032 0.75040 0.92044 0.92501 0.88992 0.87520 0.91967 0.91425 0.91950 0.75610 0.93168 0.95028 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.21 9.56 71.24 0.68 -2.53 16 2 C 0.14 6.00 7.01 42.14 0.30 6.30 16 3 C -0.33 -11.91 6.13 -20.15 -0.12 -12.03 16 4 C 0.60 19.51 7.81 86.67 0.68 20.19 16 5 O -0.59 -22.42 14.85 -4.02 -0.06 -22.48 16 6 N -0.71 -16.10 5.55 -466.38 -2.59 -18.69 16 7 C 0.16 3.08 5.96 86.38 0.51 3.60 16 8 C -0.17 -2.25 5.57 -10.79 -0.06 -2.31 16 9 H 0.12 1.38 8.04 -2.39 -0.02 1.36 16 10 C -0.17 -2.10 9.82 30.60 0.30 -1.80 16 11 C -0.14 -1.74 6.13 -10.79 -0.07 -1.80 16 12 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 13 C -0.12 -1.15 10.19 71.98 0.73 -0.42 16 14 C 0.08 2.65 11.50 85.65 0.99 3.63 16 15 N -0.34 -14.52 12.50 -56.28 -0.70 -15.22 16 16 N -0.34 -15.80 3.56 -336.69 -1.20 -17.00 16 17 C 0.27 13.92 5.97 85.63 0.51 14.43 16 18 C -0.56 -30.90 9.39 25.60 0.24 -30.66 16 19 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 20 C 0.02 1.28 5.46 84.65 0.46 1.74 16 21 N -0.92 -51.52 13.29 21.45 0.28 -51.24 16 22 Si 0.97 42.81 29.54 68.60 2.03 44.84 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 27 H 0.10 3.60 6.52 -2.39 -0.02 3.58 16 28 H 0.07 2.65 7.05 -2.38 -0.02 2.63 16 29 H 0.41 6.86 7.35 -92.71 -0.68 6.18 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.25 7.88 -2.39 -0.02 1.23 16 32 H 0.09 1.22 8.03 -2.39 -0.02 1.20 16 33 H 0.11 1.08 8.05 -2.39 -0.02 1.06 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.06 0.52 7.90 -2.39 -0.02 0.51 16 37 H 0.23 4.70 7.50 -2.91 -0.02 4.68 16 38 H 0.05 2.62 7.01 -2.39 -0.02 2.60 16 39 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -67.32 341.39 3.27 -64.04 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.36 Total: 17.41 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 5.15 Total: -1.66 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -4.21 Total: -102.15 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.06 Total: -22.48 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -67.32 3.27 -64.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895722807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.614 kcal (2) G-P(sol) polarization free energy of solvation -67.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds