Wall clock time and date at job start Mon Mar 30 2020 02:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38052 * 126.29128 * 2 1 4 4 C 1.47429 * 126.40845 * 359.96069 * 3 2 1 5 5 O 1.21597 * 120.00707 * 0.02562 * 4 3 2 6 6 N 1.34786 * 119.99378 * 179.97438 * 4 3 2 7 7 C 1.46497 * 119.99568 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47251 * 180.02562 * 7 6 4 9 9 H 1.08999 * 115.55899 * 330.70734 * 8 7 6 10 10 C 1.53002 * 117.49968 * 116.38928 * 8 7 6 11 11 C 1.53000 * 60.02940 * 107.50530 * 10 8 7 12 12 H 1.09008 * 117.49673 * 107.47884 * 11 10 8 13 13 C 1.52995 * 117.49920 * 252.47484 * 11 10 8 14 14 C 1.41283 * 107.17304 * 180.22516 * 3 2 1 15 15 N 1.30455 * 108.02348 * 359.58816 * 14 3 2 16 16 N 1.34259 * 126.29763 * 179.97438 * 2 1 3 17 17 C 1.46496 * 125.75090 * 0.02562 * 16 2 1 18 18 C 1.50704 * 109.47362 * 89.99702 * 17 16 2 19 19 H 1.07990 * 119.99840 * 0.02562 * 18 17 16 20 20 C 1.37885 * 120.00148 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99711 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 119.99790 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47471 * 60.00170 * 22 20 18 24 24 H 1.48507 * 109.47140 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47390 * 299.99738 * 22 20 18 26 26 H 1.09001 * 109.47534 * 90.02693 * 1 2 3 27 27 H 1.09011 * 109.46828 * 210.02371 * 1 2 3 28 28 H 1.09001 * 109.47270 * 330.02060 * 1 2 3 29 29 H 0.96996 * 119.99936 * 0.02562 * 6 4 3 30 30 H 1.09007 * 109.47359 * 60.00154 * 7 6 4 31 31 H 1.09004 * 109.47650 * 300.00157 * 7 6 4 32 32 H 1.09002 * 117.49918 * 0.02562 * 10 8 7 33 33 H 1.09002 * 117.49754 * 215.00713 * 10 8 7 34 34 H 1.09001 * 109.47296 * 8.60761 * 13 11 10 35 35 H 1.09007 * 109.46973 * 128.61247 * 13 11 10 36 36 H 1.09008 * 109.47059 * 248.60629 * 13 11 10 37 37 H 1.08001 * 125.99324 * 179.73805 * 14 3 2 38 38 H 1.08994 * 109.47577 * 210.00192 * 17 16 2 39 39 H 1.09003 * 109.47070 * 330.00019 * 17 16 2 40 40 H 0.97000 * 120.00117 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8856 2.5203 -0.0008 5 8 0.6995 2.7878 -0.0011 6 7 2.7998 3.5108 -0.0002 7 6 2.3642 4.9095 -0.0016 8 6 3.5898 5.8254 -0.0011 9 1 4.4794 5.4203 0.4810 10 6 3.7957 6.7306 -1.2173 11 6 3.3466 7.3321 0.1159 12 1 4.0764 7.9177 0.6751 13 6 1.8966 7.8082 0.2234 14 6 3.6590 0.6500 -0.0053 15 7 3.6341 -0.6543 0.0007 16 7 2.3017 -1.0821 0.0005 17 6 1.8502 -2.4757 0.0006 18 6 1.6958 -2.9539 -1.4202 19 1 1.9127 -2.2866 -2.2411 20 6 1.2776 -4.2434 -1.6721 21 7 1.0129 -5.0559 -0.6724 22 14 1.0869 -4.8362 -3.4331 23 1 2.3936 -4.7400 -4.1321 24 1 0.6291 -6.2490 -3.4331 25 1 0.0870 -3.9914 -4.1343 26 1 -0.3634 -0.0005 -1.0276 27 1 -0.3633 -0.8899 0.5143 28 1 -0.3634 0.8902 0.5135 29 1 3.7460 3.2974 0.0004 30 1 1.7644 5.1042 0.8876 31 1 1.7667 5.1032 -0.8924 32 1 3.0578 6.6740 -2.0176 33 1 4.8208 6.9207 -1.5354 34 1 1.3449 7.4959 -0.6633 35 1 1.4360 7.3726 1.1102 36 1 1.8759 8.8954 0.3001 37 1 4.5448 1.2677 -0.0107 38 1 2.5846 -3.0956 0.5148 39 1 0.8914 -2.5470 0.5141 40 1 0.7190 -5.9631 -0.8495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895722808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:09 Heat of formation + Delta-G solvation = 41.329647 kcal Electronic energy + Delta-G solvation = -20783.869122 eV Core-core repulsion = 17600.335720 eV Total energy + Delta-G solvation = -3183.533403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.75992 -39.14755 -37.94917 -34.18859 -33.78609 -32.04973 -31.12719 -29.01258 -27.99974 -26.80255 -26.03523 -23.38971 -22.00406 -21.73979 -20.24219 -19.69285 -18.79476 -16.99476 -16.74686 -16.49737 -15.26170 -15.15018 -14.89562 -14.51850 -14.23667 -13.97378 -13.77420 -13.35890 -13.05631 -12.95620 -12.56399 -12.45840 -12.32933 -12.07718 -11.81604 -11.75728 -11.46406 -11.40926 -11.12756 -10.86385 -10.37145 -10.31290 -10.25484 -10.11451 -9.94548 -9.35762 -8.88744 -8.70034 -8.57247 -7.88796 -6.32855 -4.40714 2.21749 2.81480 3.14922 3.20632 3.24506 3.28493 3.41793 3.67720 3.95654 4.24973 4.35180 4.57344 4.59697 4.97105 5.00874 5.04308 5.13707 5.27598 5.38841 5.50502 5.54149 5.56009 5.64996 5.69797 5.75201 5.78820 5.92192 5.98866 6.03463 6.14878 6.44215 6.57666 6.67381 6.81620 6.91875 7.17705 7.56877 7.77339 7.78265 7.81793 8.39555 8.63366 8.66134 9.26049 10.75367 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033840 B = 0.003178 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.218267 B = 8807.172888 C = 8827.849012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.165 3.835 3 C -0.333 4.333 4 C 0.603 3.397 5 O -0.558 6.558 6 N -0.733 5.733 7 C 0.157 3.843 8 C -0.166 4.166 9 H 0.110 0.890 10 C -0.174 4.174 11 C -0.145 4.145 12 H 0.105 0.895 13 C -0.127 4.127 14 C 0.057 3.943 15 N -0.296 5.296 16 N -0.314 5.314 17 C 0.251 3.749 18 C -0.541 4.541 19 H 0.065 0.935 20 C 0.068 3.932 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.273 1.273 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.398 0.602 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.175 0.825 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 20.433 2.119 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.028 3.972 3 C -0.348 4.348 4 C 0.393 3.607 5 O -0.437 6.437 6 N -0.386 5.386 7 C 0.033 3.967 8 C -0.184 4.184 9 H 0.128 0.872 10 C -0.211 4.211 11 C -0.164 4.164 12 H 0.123 0.877 13 C -0.184 4.184 14 C -0.130 4.130 15 N -0.116 5.116 16 N -0.091 5.091 17 C 0.134 3.866 18 C -0.579 4.579 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.527 5.527 22 Si 0.735 3.265 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.198 1.198 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.232 0.768 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.192 0.808 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.536 19.166 2.181 19.611 hybrid contribution 0.173 0.154 -0.970 0.997 sum 3.709 19.320 1.210 19.710 Atomic orbital electron populations 1.20569 0.86820 1.03762 1.03915 1.21481 0.94961 0.86540 0.94257 1.19680 0.93134 0.92523 1.29488 1.17307 0.84990 0.83915 0.74442 1.90685 1.16745 1.84517 1.51761 1.45706 1.09798 1.05348 1.77704 1.20732 0.94337 0.79580 1.02065 1.22573 1.00108 0.92205 1.03525 0.87207 1.23228 1.02642 1.03695 0.91502 1.22371 0.98705 0.94483 1.00834 0.87699 1.21388 0.93641 1.01007 1.02389 1.23715 0.96337 0.92618 1.00297 1.77136 0.98632 1.12271 1.23572 1.49362 1.02481 1.08300 1.48971 1.19844 0.96403 0.70925 0.99411 1.21215 1.47514 0.98164 0.91009 0.91715 1.24921 0.94430 0.95981 0.98308 1.69902 1.44421 1.07228 1.31188 0.86375 0.78881 0.77744 0.83492 1.19907 1.20865 1.19832 0.89854 0.90888 0.88822 0.76795 0.91340 0.91630 0.88480 0.88731 0.92212 0.91846 0.92142 0.80791 0.92529 0.92557 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.57 36.00 0.34 -1.36 16 2 C 0.16 3.41 7.01 -81.60 -0.57 2.84 16 3 C -0.33 -6.18 6.13 -105.07 -0.64 -6.82 16 4 C 0.60 10.21 7.81 -12.51 -0.10 10.12 16 5 O -0.56 -10.84 14.84 5.28 0.08 -10.76 16 6 N -0.73 -9.21 5.55 -61.38 -0.34 -9.55 16 7 C 0.16 1.70 5.04 -4.04 -0.02 1.68 16 8 C -0.17 -1.35 5.85 -90.58 -0.53 -1.88 16 9 H 0.11 0.80 8.04 -51.93 -0.42 0.38 16 10 C -0.17 -1.29 9.82 -26.73 -0.26 -1.55 16 11 C -0.15 -1.04 6.41 -90.59 -0.58 -1.62 16 12 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 13 C -0.13 -0.90 9.20 37.15 0.34 -0.55 16 14 C 0.06 1.01 11.50 -16.98 -0.20 0.81 16 15 N -0.30 -6.43 12.50 30.86 0.39 -6.04 16 16 N -0.31 -7.19 3.56 -57.78 -0.21 -7.39 16 17 C 0.25 6.31 5.97 -5.19 -0.03 6.28 16 18 C -0.54 -14.67 9.39 -34.44 -0.32 -15.00 16 19 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 20 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 21 N -0.89 -24.71 13.29 55.43 0.74 -23.98 16 22 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.07 1.30 7.05 -51.92 -0.37 0.94 16 28 H 0.09 1.65 6.50 -51.93 -0.34 1.31 16 29 H 0.40 4.03 7.35 -40.82 -0.30 3.73 16 30 H 0.07 0.79 7.77 -51.93 -0.40 0.39 16 31 H 0.07 0.77 7.87 -51.93 -0.41 0.37 16 32 H 0.10 0.75 7.94 -51.93 -0.41 0.34 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.44 7.90 -51.93 -0.41 0.03 16 35 H 0.06 0.46 7.84 -51.92 -0.41 0.06 16 36 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 37 H 0.18 2.18 7.50 -52.49 -0.39 1.79 16 38 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.06 1.40 7.02 -51.93 -0.36 1.04 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 339.36 15.07 5.11 5.11 Total: -1.00 -30.91 339.36 -7.80 -38.71 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.88 Total: 3.36 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -2.67 Total: -5.34 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.58 Total: -46.96 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.91 -7.80 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895722808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.035 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds