Wall clock time and date at job start Mon Mar 30 2020 02:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38052 * 126.29128 * 2 1 4 4 C 1.47429 * 126.40845 * 359.96069 * 3 2 1 5 5 O 1.21597 * 120.00707 * 0.02562 * 4 3 2 6 6 N 1.34786 * 119.99378 * 179.97438 * 4 3 2 7 7 C 1.46497 * 119.99568 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47251 * 180.02562 * 7 6 4 9 9 H 1.08999 * 115.55899 * 330.70734 * 8 7 6 10 10 C 1.53002 * 117.49968 * 116.38928 * 8 7 6 11 11 C 1.53000 * 60.02940 * 107.50530 * 10 8 7 12 12 H 1.09008 * 117.49673 * 107.47884 * 11 10 8 13 13 C 1.52995 * 117.49920 * 252.47484 * 11 10 8 14 14 C 1.41283 * 107.17304 * 180.22516 * 3 2 1 15 15 N 1.30455 * 108.02348 * 359.58816 * 14 3 2 16 16 N 1.34259 * 126.29763 * 179.97438 * 2 1 3 17 17 C 1.46496 * 125.75090 * 0.02562 * 16 2 1 18 18 C 1.50704 * 109.47362 * 89.99702 * 17 16 2 19 19 H 1.07990 * 119.99840 * 0.02562 * 18 17 16 20 20 C 1.37885 * 120.00148 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99711 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 119.99790 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47471 * 60.00170 * 22 20 18 24 24 H 1.48507 * 109.47140 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47390 * 299.99738 * 22 20 18 26 26 H 1.09001 * 109.47534 * 90.02693 * 1 2 3 27 27 H 1.09011 * 109.46828 * 210.02371 * 1 2 3 28 28 H 1.09001 * 109.47270 * 330.02060 * 1 2 3 29 29 H 0.96996 * 119.99936 * 0.02562 * 6 4 3 30 30 H 1.09007 * 109.47359 * 60.00154 * 7 6 4 31 31 H 1.09004 * 109.47650 * 300.00157 * 7 6 4 32 32 H 1.09002 * 117.49918 * 0.02562 * 10 8 7 33 33 H 1.09002 * 117.49754 * 215.00713 * 10 8 7 34 34 H 1.09001 * 109.47296 * 8.60761 * 13 11 10 35 35 H 1.09007 * 109.46973 * 128.61247 * 13 11 10 36 36 H 1.09008 * 109.47059 * 248.60629 * 13 11 10 37 37 H 1.08001 * 125.99324 * 179.73805 * 14 3 2 38 38 H 1.08994 * 109.47577 * 210.00192 * 17 16 2 39 39 H 1.09003 * 109.47070 * 330.00019 * 17 16 2 40 40 H 0.97000 * 120.00117 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8856 2.5203 -0.0008 5 8 0.6995 2.7878 -0.0011 6 7 2.7998 3.5108 -0.0002 7 6 2.3642 4.9095 -0.0016 8 6 3.5898 5.8254 -0.0011 9 1 4.4794 5.4203 0.4810 10 6 3.7957 6.7306 -1.2173 11 6 3.3466 7.3321 0.1159 12 1 4.0764 7.9177 0.6751 13 6 1.8966 7.8082 0.2234 14 6 3.6590 0.6500 -0.0053 15 7 3.6341 -0.6543 0.0007 16 7 2.3017 -1.0821 0.0005 17 6 1.8502 -2.4757 0.0006 18 6 1.6958 -2.9539 -1.4202 19 1 1.9127 -2.2866 -2.2411 20 6 1.2776 -4.2434 -1.6721 21 7 1.0129 -5.0559 -0.6724 22 14 1.0869 -4.8362 -3.4331 23 1 2.3936 -4.7400 -4.1321 24 1 0.6291 -6.2490 -3.4331 25 1 0.0870 -3.9914 -4.1343 26 1 -0.3634 -0.0005 -1.0276 27 1 -0.3633 -0.8899 0.5143 28 1 -0.3634 0.8902 0.5135 29 1 3.7460 3.2974 0.0004 30 1 1.7644 5.1042 0.8876 31 1 1.7667 5.1032 -0.8924 32 1 3.0578 6.6740 -2.0176 33 1 4.8208 6.9207 -1.5354 34 1 1.3449 7.4959 -0.6633 35 1 1.4360 7.3726 1.1102 36 1 1.8759 8.8954 0.3001 37 1 4.5448 1.2677 -0.0107 38 1 2.5846 -3.0956 0.5148 39 1 0.8914 -2.5470 0.5141 40 1 0.7190 -5.9631 -0.8495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895722808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:09 Heat of formation + Delta-G solvation = 22.141925 kcal Electronic energy + Delta-G solvation = -20784.701164 eV Core-core repulsion = 17600.335720 eV Total energy + Delta-G solvation = -3184.365445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.30543 -40.27362 -38.83216 -35.83430 -35.23667 -33.78486 -32.74303 -29.93469 -29.20672 -28.43527 -27.25553 -25.27970 -23.32564 -22.44496 -21.30585 -20.99730 -20.10436 -18.86172 -18.30432 -17.35869 -16.83577 -16.51308 -16.24515 -15.99329 -15.63070 -15.26400 -14.67151 -14.54278 -14.31968 -14.08453 -14.04774 -13.76197 -13.67770 -13.56731 -13.09672 -13.04558 -12.97251 -12.69129 -12.37578 -12.30361 -12.07919 -11.88184 -11.73668 -10.99225 -10.94046 -10.76274 -10.61364 -10.26678 -10.02941 -9.42275 -8.38147 -6.54735 0.68378 1.32911 1.38551 1.39109 1.47649 1.65688 2.30798 2.35093 2.55611 2.90059 2.94161 3.70146 3.74580 3.77907 3.96207 3.98752 4.14143 4.24204 4.32878 4.49117 4.51552 4.61170 4.69859 4.77542 4.81743 4.90212 4.96685 4.97819 5.02438 5.07444 5.16904 5.20616 5.29339 5.46993 5.48460 5.58509 5.68836 5.74474 6.04381 6.54079 6.65642 6.85385 7.16306 7.38033 8.69626 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033840 B = 0.003178 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.218267 B = 8807.172888 C = 8827.849012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.144 3.856 3 C -0.331 4.331 4 C 0.603 3.397 5 O -0.586 6.586 6 N -0.713 5.713 7 C 0.157 3.843 8 C -0.169 4.169 9 H 0.125 0.875 10 C -0.172 4.172 11 C -0.140 4.140 12 H 0.120 0.880 13 C -0.130 4.130 14 C 0.080 3.920 15 N -0.337 5.337 16 N -0.339 5.339 17 C 0.267 3.733 18 C -0.557 4.557 19 H 0.052 0.948 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.971 3.029 23 H -0.273 1.273 24 H -0.273 1.273 25 H -0.267 1.267 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.413 0.587 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.228 0.772 38 H 0.032 0.968 39 H 0.050 0.950 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.935 22.306 1.435 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.008 3.992 3 C -0.346 4.346 4 C 0.392 3.608 5 O -0.468 6.468 6 N -0.365 5.365 7 C 0.034 3.966 8 C -0.188 4.188 9 H 0.143 0.857 10 C -0.209 4.209 11 C -0.159 4.159 12 H 0.138 0.862 13 C -0.187 4.187 14 C -0.107 4.107 15 N -0.156 5.156 16 N -0.116 5.116 17 C 0.149 3.851 18 C -0.595 4.595 19 H 0.070 0.930 20 C -0.178 4.178 21 N -0.555 5.555 22 Si 0.795 3.205 23 H -0.198 1.198 24 H -0.197 1.197 25 H -0.191 1.191 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.120 0.880 29 H 0.250 0.750 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.244 0.756 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.730 21.075 1.505 21.652 hybrid contribution -0.155 -0.276 -0.716 0.783 sum 4.575 20.799 0.789 21.311 Atomic orbital electron populations 1.20546 0.85944 1.04013 1.03888 1.21973 0.95934 0.86789 0.94498 1.19965 0.93355 0.93020 1.28310 1.17151 0.85088 0.83926 0.74633 1.90673 1.18081 1.84789 1.53268 1.45559 1.09967 1.05323 1.75629 1.20789 0.95691 0.78839 1.01257 1.22505 0.99299 0.92258 1.04706 0.85683 1.23284 1.03277 1.03093 0.91259 1.22474 0.98934 0.93705 1.00760 0.86207 1.21418 0.93692 1.01842 1.01781 1.24517 0.97630 0.91582 0.96946 1.77092 0.98290 1.14453 1.25787 1.49104 1.03401 1.07742 1.51310 1.19362 0.95283 0.72355 0.98143 1.21373 1.48059 0.98539 0.91569 0.92999 1.25735 0.93778 0.95913 1.02326 1.69987 1.44723 1.07633 1.33121 0.85401 0.78844 0.77688 0.78570 1.19794 1.19719 1.19146 0.89959 0.91038 0.88033 0.75043 0.92043 0.92665 0.89150 0.87369 0.92983 0.92338 0.90940 0.75605 0.95035 0.93187 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.22 9.57 71.23 0.68 -2.54 16 2 C 0.14 6.00 7.01 42.14 0.30 6.30 16 3 C -0.33 -11.92 6.13 -20.15 -0.12 -12.04 16 4 C 0.60 19.53 7.81 86.66 0.68 20.21 16 5 O -0.59 -22.40 14.84 -4.02 -0.06 -22.46 16 6 N -0.71 -16.18 5.55 -466.36 -2.59 -18.76 16 7 C 0.16 3.13 5.04 86.38 0.44 3.57 16 8 C -0.17 -2.28 5.85 -10.77 -0.06 -2.34 16 9 H 0.13 1.34 8.04 -2.39 -0.02 1.32 16 10 C -0.17 -2.10 9.82 30.60 0.30 -1.80 16 11 C -0.14 -1.64 6.41 -10.77 -0.07 -1.71 16 12 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 13 C -0.13 -1.62 9.20 71.98 0.66 -0.96 16 14 C 0.08 2.65 11.50 85.65 0.99 3.63 16 15 N -0.34 -14.52 12.50 -56.27 -0.70 -15.22 16 16 N -0.34 -15.80 3.56 -336.70 -1.20 -17.00 16 17 C 0.27 13.93 5.97 85.63 0.51 14.44 16 18 C -0.56 -30.95 9.39 25.60 0.24 -30.70 16 19 H 0.05 2.95 7.81 -2.92 -0.02 2.93 16 20 C 0.02 1.30 5.46 84.66 0.46 1.76 16 21 N -0.92 -51.56 13.29 21.45 0.28 -51.27 16 22 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 26 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 27 H 0.07 2.65 7.05 -2.38 -0.02 2.63 16 28 H 0.10 3.61 6.50 -2.39 -0.02 3.59 16 29 H 0.41 6.86 7.35 -92.71 -0.68 6.18 16 30 H 0.06 1.34 7.77 -2.38 -0.02 1.32 16 31 H 0.06 1.24 7.87 -2.39 -0.02 1.22 16 32 H 0.09 1.24 7.94 -2.39 -0.02 1.22 16 33 H 0.11 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.05 0.72 7.90 -2.39 -0.02 0.70 16 35 H 0.06 0.78 7.84 -2.38 -0.02 0.76 16 36 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.23 4.70 7.50 -2.91 -0.02 4.68 16 38 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 2.61 7.02 -2.39 -0.02 2.60 16 40 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -67.43 339.36 3.12 -64.31 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.36 Total: 17.77 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 5.00 Total: -2.18 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -4.21 Total: -102.26 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.06 Total: -22.46 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -67.43 3.12 -64.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895722808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.451 kcal (2) G-P(sol) polarization free energy of solvation -67.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds