Wall clock time and date at job start Mon Mar 30 2020 02:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38047 * 126.29480 * 2 1 4 4 C 1.47430 * 126.41106 * 0.02562 * 3 2 1 5 5 O 1.21603 * 120.00081 * 359.71551 * 4 3 2 6 6 N 1.34777 * 119.99963 * 179.71630 * 4 3 2 7 7 C 1.46498 * 119.99828 * 180.27989 * 6 4 3 8 8 C 1.52996 * 109.47059 * 179.72339 * 7 6 4 9 9 H 1.09001 * 115.55260 * 29.27362 * 8 7 6 10 10 C 1.53010 * 117.49905 * 243.60700 * 8 7 6 11 11 C 1.52997 * 117.50238 * 174.98574 * 8 7 6 12 12 H 1.08998 * 117.50032 * 214.97946 * 11 8 7 13 13 C 1.53007 * 117.49552 * 359.97438 * 11 8 7 14 14 C 1.41285 * 107.17180 * 179.76409 * 3 2 1 15 15 N 1.30451 * 108.02593 * 0.24208 * 14 3 2 16 16 N 1.34261 * 126.29419 * 180.18582 * 2 1 3 17 17 C 1.46507 * 125.75001 * 359.97438 * 16 2 1 18 18 C 1.50703 * 109.47269 * 270.31647 * 17 16 2 19 19 H 1.08000 * 119.99358 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00053 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99991 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99968 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47231 * 90.00056 * 22 20 18 24 24 H 1.48497 * 109.46838 * 210.00041 * 22 20 18 25 25 H 1.48495 * 109.47168 * 330.00010 * 22 20 18 26 26 H 1.08995 * 109.47501 * 90.02273 * 1 2 3 27 27 H 1.09003 * 109.47300 * 210.02789 * 1 2 3 28 28 H 1.09004 * 109.47176 * 330.02292 * 1 2 3 29 29 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 30 30 H 1.09004 * 109.46963 * 299.72135 * 7 6 4 31 31 H 1.08994 * 109.47567 * 59.72287 * 7 6 4 32 32 H 1.09004 * 117.49355 * 0.02562 * 10 8 7 33 33 H 1.08999 * 117.49881 * 144.99290 * 10 8 7 34 34 H 1.09000 * 109.47359 * 59.99939 * 13 11 8 35 35 H 1.08998 * 109.47098 * 180.02562 * 13 11 8 36 36 H 1.09002 * 109.46877 * 299.99999 * 13 11 8 37 37 H 1.08002 * 125.98809 * 180.20353 * 14 3 2 38 38 H 1.08993 * 109.47226 * 30.31966 * 17 16 2 39 39 H 1.09005 * 109.46620 * 150.31980 * 17 16 2 40 40 H 0.96998 * 119.99829 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6996 2.7878 -0.0042 6 7 2.7999 3.5107 0.0062 7 6 2.3644 4.9094 0.0130 8 6 3.5900 5.8251 0.0255 9 1 4.4826 5.4225 -0.4532 10 6 3.7882 6.7234 1.2482 11 6 3.3474 7.3317 -0.0846 12 1 4.0804 7.9205 -0.6361 13 6 1.8976 7.8073 -0.1995 14 6 3.6590 0.6498 0.0056 15 7 3.6340 -0.6545 0.0034 16 7 2.3017 -1.0821 -0.0035 17 6 1.8500 -2.4758 -0.0075 18 6 1.6882 -2.9556 1.4119 19 1 1.9001 -2.2888 2.2347 20 6 1.2696 -4.2455 1.6602 21 7 1.0110 -5.0572 0.6582 22 14 1.0683 -4.8399 3.4196 23 1 -0.3171 -4.5665 3.8791 24 1 1.3314 -6.3001 3.4819 25 1 2.0306 -4.1257 4.2965 26 1 -0.3634 -0.0004 -1.0276 27 1 -0.3634 -0.8897 0.5143 28 1 -0.3634 0.8902 0.5135 29 1 3.7461 3.2973 0.0104 30 1 1.7705 5.1093 -0.8790 31 1 1.7610 5.0978 0.9009 32 1 3.0457 6.6616 2.0438 33 1 4.8113 6.9116 1.5738 34 1 1.3401 7.4894 0.6815 35 1 1.8765 8.8947 -0.2705 36 1 1.4436 7.3764 -1.0919 37 1 4.5448 1.2676 0.0101 38 1 0.8940 -2.5465 -0.5261 39 1 2.5873 -3.0951 -0.5185 40 1 0.7169 -5.9649 0.8329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895722809.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:12 Heat of formation + Delta-G solvation = 40.970927 kcal Electronic energy + Delta-G solvation = -20786.191415 eV Core-core repulsion = 17602.642458 eV Total energy + Delta-G solvation = -3183.548958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75749 -39.14942 -37.95099 -34.18827 -33.78918 -32.04137 -31.12602 -29.01037 -27.99943 -26.80661 -26.02999 -23.38274 -22.00399 -21.74125 -20.24125 -19.69512 -18.79584 -16.99523 -16.74667 -16.49654 -15.25665 -15.13743 -14.90665 -14.49697 -14.23417 -13.97097 -13.77179 -13.36542 -13.03577 -12.96031 -12.54365 -12.50710 -12.33982 -12.04324 -11.81610 -11.75755 -11.46469 -11.40684 -11.11062 -10.89492 -10.37183 -10.30489 -10.26639 -10.10716 -9.92836 -9.35385 -8.88764 -8.70996 -8.56621 -7.89012 -6.33327 -4.41320 2.21629 2.81518 3.15169 3.18388 3.24948 3.29965 3.42257 3.67852 3.95714 4.24701 4.35139 4.57277 4.59908 4.97097 5.00589 5.04196 5.13720 5.28115 5.38940 5.50505 5.54233 5.56114 5.65280 5.70336 5.75356 5.80073 5.92655 5.99785 6.03581 6.11878 6.48589 6.60813 6.68238 6.80417 6.90915 7.18007 7.56905 7.77374 7.77898 7.81774 8.39666 8.63419 8.66238 9.25745 10.74840 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033785 B = 0.003180 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.583045 B = 8803.615326 C = 8821.863935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.165 3.835 3 C -0.333 4.333 4 C 0.603 3.397 5 O -0.558 6.558 6 N -0.733 5.733 7 C 0.157 3.843 8 C -0.166 4.166 9 H 0.110 0.890 10 C -0.174 4.174 11 C -0.145 4.145 12 H 0.105 0.895 13 C -0.127 4.127 14 C 0.057 3.943 15 N -0.296 5.296 16 N -0.314 5.314 17 C 0.251 3.749 18 C -0.541 4.541 19 H 0.065 0.935 20 C 0.067 3.933 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.398 0.602 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.175 0.825 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 20.410 -1.983 20.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.028 3.972 3 C -0.348 4.348 4 C 0.393 3.607 5 O -0.437 6.437 6 N -0.386 5.386 7 C 0.033 3.967 8 C -0.184 4.184 9 H 0.128 0.872 10 C -0.211 4.211 11 C -0.164 4.164 12 H 0.123 0.877 13 C -0.184 4.184 14 C -0.130 4.130 15 N -0.116 5.116 16 N -0.091 5.091 17 C 0.134 3.866 18 C -0.579 4.579 19 H 0.084 0.916 20 C -0.137 4.137 21 N -0.527 5.527 22 Si 0.735 3.265 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.196 1.196 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.232 0.768 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.192 0.808 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.541 19.145 -2.045 19.576 hybrid contribution 0.163 0.158 0.921 0.949 sum 3.704 19.303 -1.124 19.687 Atomic orbital electron populations 1.20610 0.86858 1.04829 1.03266 1.21478 0.94967 0.86505 0.94238 1.19687 0.93153 0.92535 1.29432 1.17308 0.84991 0.83919 0.74445 1.90686 1.16745 1.84518 1.51762 1.45706 1.09800 1.05351 1.77693 1.20731 0.94337 0.79579 1.02067 1.22563 1.00099 0.92277 1.03479 0.87208 1.23227 1.02686 1.03727 0.91435 1.22359 0.98724 0.94435 1.00857 0.87699 1.21389 0.93642 1.01012 1.02385 1.23714 0.96338 0.92619 1.00325 1.77130 0.98670 1.12273 1.23525 1.49373 1.02472 1.08294 1.48998 1.19850 0.96418 0.70943 0.99411 1.21265 1.47450 0.98146 0.91058 0.91642 1.24925 0.94455 0.95987 0.98292 1.69914 1.44508 1.07219 1.31059 0.86321 0.78774 0.77962 0.83473 1.20184 1.20790 1.19621 0.90525 0.89911 0.88634 0.76795 0.91340 0.91629 0.88479 0.88729 0.92209 0.92143 0.91848 0.80803 0.92556 0.92496 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 9.34 36.00 0.34 -1.46 16 2 C 0.17 3.42 7.01 -81.60 -0.57 2.85 16 3 C -0.33 -6.18 6.13 -105.07 -0.64 -6.82 16 4 C 0.60 10.22 7.81 -12.52 -0.10 10.12 16 5 O -0.56 -10.85 14.84 5.27 0.08 -10.77 16 6 N -0.73 -9.23 5.55 -61.39 -0.34 -9.57 16 7 C 0.16 1.70 5.04 -4.04 -0.02 1.68 16 8 C -0.17 -1.35 5.85 -90.62 -0.53 -1.88 16 9 H 0.11 0.80 8.04 -51.93 -0.42 0.38 16 10 C -0.17 -1.29 9.82 -26.73 -0.26 -1.55 16 11 C -0.15 -1.04 6.41 -90.62 -0.58 -1.62 16 12 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 13 C -0.13 -0.90 9.19 37.16 0.34 -0.56 16 14 C 0.06 1.00 11.50 -16.98 -0.20 0.81 16 15 N -0.30 -6.43 12.50 30.86 0.39 -6.04 16 16 N -0.31 -7.19 3.56 -57.77 -0.21 -7.39 16 17 C 0.25 6.29 5.78 -5.19 -0.03 6.26 16 18 C -0.54 -14.64 9.39 -34.44 -0.32 -14.96 16 19 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 20 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 21 N -0.89 -24.66 13.29 55.43 0.74 -23.93 16 22 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.08 1.57 7.71 -51.93 -0.40 1.17 16 28 H 0.10 1.73 6.50 -51.93 -0.34 1.39 16 29 H 0.40 4.04 7.35 -40.82 -0.30 3.73 16 30 H 0.07 0.79 7.77 -51.93 -0.40 0.39 16 31 H 0.07 0.77 7.87 -51.93 -0.41 0.37 16 32 H 0.10 0.75 7.94 -51.93 -0.41 0.34 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.44 7.90 -51.93 -0.41 0.03 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.46 7.83 -51.93 -0.41 0.06 16 37 H 0.18 2.18 7.50 -52.49 -0.39 1.79 16 38 H 0.06 1.40 7.64 -51.93 -0.40 1.00 16 39 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -30.87 340.21 -7.86 -38.73 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.95 Total: 3.41 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.67 Total: -5.42 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.58 Total: -46.93 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.87 -7.86 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895722809.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.704 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds