Wall clock time and date at job start Mon Mar 30 2020 02:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38047 * 126.29480 * 2 1 4 4 C 1.47430 * 126.41106 * 0.02562 * 3 2 1 5 5 O 1.21603 * 120.00081 * 359.71551 * 4 3 2 6 6 N 1.34777 * 119.99963 * 179.71630 * 4 3 2 7 7 C 1.46498 * 119.99828 * 180.27989 * 6 4 3 8 8 C 1.52996 * 109.47059 * 179.72339 * 7 6 4 9 9 H 1.09001 * 115.55260 * 29.27362 * 8 7 6 10 10 C 1.53010 * 117.49905 * 243.60700 * 8 7 6 11 11 C 1.52997 * 117.50238 * 174.98574 * 8 7 6 12 12 H 1.08998 * 117.50032 * 214.97946 * 11 8 7 13 13 C 1.53007 * 117.49552 * 359.97438 * 11 8 7 14 14 C 1.41285 * 107.17180 * 179.76409 * 3 2 1 15 15 N 1.30451 * 108.02593 * 0.24208 * 14 3 2 16 16 N 1.34261 * 126.29419 * 180.18582 * 2 1 3 17 17 C 1.46507 * 125.75001 * 359.97438 * 16 2 1 18 18 C 1.50703 * 109.47269 * 270.31647 * 17 16 2 19 19 H 1.08000 * 119.99358 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00053 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99991 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99968 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47231 * 90.00056 * 22 20 18 24 24 H 1.48497 * 109.46838 * 210.00041 * 22 20 18 25 25 H 1.48495 * 109.47168 * 330.00010 * 22 20 18 26 26 H 1.08995 * 109.47501 * 90.02273 * 1 2 3 27 27 H 1.09003 * 109.47300 * 210.02789 * 1 2 3 28 28 H 1.09004 * 109.47176 * 330.02292 * 1 2 3 29 29 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 30 30 H 1.09004 * 109.46963 * 299.72135 * 7 6 4 31 31 H 1.08994 * 109.47567 * 59.72287 * 7 6 4 32 32 H 1.09004 * 117.49355 * 0.02562 * 10 8 7 33 33 H 1.08999 * 117.49881 * 144.99290 * 10 8 7 34 34 H 1.09000 * 109.47359 * 59.99939 * 13 11 8 35 35 H 1.08998 * 109.47098 * 180.02562 * 13 11 8 36 36 H 1.09002 * 109.46877 * 299.99999 * 13 11 8 37 37 H 1.08002 * 125.98809 * 180.20353 * 14 3 2 38 38 H 1.08993 * 109.47226 * 30.31966 * 17 16 2 39 39 H 1.09005 * 109.46620 * 150.31980 * 17 16 2 40 40 H 0.96998 * 119.99829 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6996 2.7878 -0.0042 6 7 2.7999 3.5107 0.0062 7 6 2.3644 4.9094 0.0130 8 6 3.5900 5.8251 0.0255 9 1 4.4826 5.4225 -0.4532 10 6 3.7882 6.7234 1.2482 11 6 3.3474 7.3317 -0.0846 12 1 4.0804 7.9205 -0.6361 13 6 1.8976 7.8073 -0.1995 14 6 3.6590 0.6498 0.0056 15 7 3.6340 -0.6545 0.0034 16 7 2.3017 -1.0821 -0.0035 17 6 1.8500 -2.4758 -0.0075 18 6 1.6882 -2.9556 1.4119 19 1 1.9001 -2.2888 2.2347 20 6 1.2696 -4.2455 1.6602 21 7 1.0110 -5.0572 0.6582 22 14 1.0683 -4.8399 3.4196 23 1 -0.3171 -4.5665 3.8791 24 1 1.3314 -6.3001 3.4819 25 1 2.0306 -4.1257 4.2965 26 1 -0.3634 -0.0004 -1.0276 27 1 -0.3634 -0.8897 0.5143 28 1 -0.3634 0.8902 0.5135 29 1 3.7461 3.2973 0.0104 30 1 1.7705 5.1093 -0.8790 31 1 1.7610 5.0978 0.9009 32 1 3.0457 6.6616 2.0438 33 1 4.8113 6.9116 1.5738 34 1 1.3401 7.4894 0.6815 35 1 1.8765 8.8947 -0.2705 36 1 1.4436 7.3764 -1.0919 37 1 4.5448 1.2676 0.0101 38 1 0.8940 -2.5465 -0.5261 39 1 2.5873 -3.0951 -0.5185 40 1 0.7169 -5.9649 0.8329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895722809.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:11 Heat of formation + Delta-G solvation = 21.814077 kcal Electronic energy + Delta-G solvation = -20787.022119 eV Core-core repulsion = 17602.642458 eV Total energy + Delta-G solvation = -3184.379661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.30297 -40.27406 -38.83583 -35.83725 -35.23604 -33.77727 -32.74042 -29.93160 -29.20659 -28.43910 -27.25047 -25.27312 -23.32421 -22.44805 -21.30644 -20.99957 -20.10372 -18.86562 -18.29901 -17.35882 -16.83309 -16.49847 -16.22679 -16.01468 -15.61260 -15.25171 -14.66828 -14.54857 -14.35191 -14.11135 -14.00572 -13.77149 -13.62953 -13.58483 -13.10856 -13.03744 -12.95661 -12.71244 -12.37624 -12.32126 -12.07871 -11.86549 -11.73476 -10.99183 -10.94052 -10.76606 -10.61258 -10.25992 -10.03026 -9.42399 -8.38431 -6.55096 0.68442 1.32991 1.37305 1.38779 1.48831 1.66283 2.30706 2.35165 2.55746 2.90071 2.93781 3.70059 3.75175 3.78021 3.96088 3.98921 4.14543 4.23411 4.32833 4.49082 4.53833 4.65440 4.69679 4.78250 4.81084 4.90740 4.96659 4.97849 5.02459 5.07834 5.16372 5.20608 5.29281 5.46975 5.48445 5.58522 5.69001 5.74285 6.04625 6.54272 6.65643 6.85549 7.16227 7.38052 8.69477 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033785 B = 0.003180 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.583045 B = 8803.615326 C = 8821.863935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.145 3.855 3 C -0.331 4.331 4 C 0.603 3.397 5 O -0.586 6.586 6 N -0.713 5.713 7 C 0.158 3.842 8 C -0.169 4.169 9 H 0.125 0.875 10 C -0.172 4.172 11 C -0.140 4.140 12 H 0.120 0.880 13 C -0.130 4.130 14 C 0.080 3.920 15 N -0.337 5.337 16 N -0.339 5.339 17 C 0.267 3.733 18 C -0.557 4.557 19 H 0.051 0.949 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.972 3.028 23 H -0.266 1.266 24 H -0.273 1.273 25 H -0.273 1.273 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.413 0.587 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.228 0.772 38 H 0.050 0.950 39 H 0.032 0.968 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.906 22.286 -1.381 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.009 3.991 3 C -0.347 4.347 4 C 0.392 3.608 5 O -0.468 6.468 6 N -0.365 5.365 7 C 0.034 3.966 8 C -0.188 4.188 9 H 0.143 0.857 10 C -0.209 4.209 11 C -0.159 4.159 12 H 0.138 0.862 13 C -0.187 4.187 14 C -0.107 4.107 15 N -0.156 5.156 16 N -0.116 5.116 17 C 0.149 3.851 18 C -0.595 4.595 19 H 0.070 0.930 20 C -0.178 4.178 21 N -0.555 5.555 22 Si 0.795 3.205 23 H -0.191 1.191 24 H -0.198 1.198 25 H -0.198 1.198 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.250 0.750 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.126 0.874 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.244 0.756 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.704 21.057 -1.451 21.625 hybrid contribution -0.158 -0.273 0.693 0.761 sum 4.546 20.784 -0.758 21.289 Atomic orbital electron populations 1.20577 0.85953 1.04204 1.04047 1.21974 0.95951 0.86755 0.94450 1.19967 0.93366 0.93030 1.28297 1.17152 0.85089 0.83929 0.74637 1.90675 1.18076 1.84789 1.53268 1.45560 1.09968 1.05328 1.75623 1.20789 0.95689 0.78837 1.01260 1.22496 0.99290 0.92333 1.04658 0.85686 1.23283 1.03315 1.03133 0.91194 1.22462 0.98958 0.93664 1.00768 0.86206 1.21418 0.93690 1.01848 1.01778 1.24515 0.97635 0.91582 0.96972 1.77085 0.98335 1.14455 1.25754 1.49114 1.03386 1.07737 1.51355 1.19364 0.95266 0.72368 0.98132 1.21403 1.48005 0.98502 0.91580 0.93034 1.25734 0.93806 0.95920 1.02292 1.69995 1.44818 1.07654 1.32989 0.85344 0.78968 0.77660 0.78490 1.19111 1.19803 1.19829 0.89076 0.91170 0.88350 0.75047 0.92047 0.92660 0.89149 0.87369 0.92980 0.90940 0.92339 0.75623 0.93214 0.95000 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.36 9.34 71.23 0.67 -2.70 16 2 C 0.14 6.03 7.01 42.14 0.30 6.32 16 3 C -0.33 -11.93 6.13 -20.15 -0.12 -12.05 16 4 C 0.60 19.54 7.81 86.66 0.68 20.22 16 5 O -0.59 -22.41 14.84 -4.04 -0.06 -22.47 16 6 N -0.71 -16.20 5.55 -466.38 -2.59 -18.79 16 7 C 0.16 3.14 5.04 86.38 0.44 3.57 16 8 C -0.17 -2.28 5.85 -10.79 -0.06 -2.34 16 9 H 0.13 1.34 8.04 -2.39 -0.02 1.32 16 10 C -0.17 -2.10 9.82 30.60 0.30 -1.80 16 11 C -0.14 -1.64 6.41 -10.79 -0.07 -1.71 16 12 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 13 C -0.13 -1.62 9.19 71.98 0.66 -0.96 16 14 C 0.08 2.64 11.50 85.65 0.99 3.63 16 15 N -0.34 -14.54 12.50 -56.28 -0.70 -15.24 16 16 N -0.34 -15.81 3.56 -336.68 -1.20 -17.01 16 17 C 0.27 13.93 5.78 85.63 0.49 14.43 16 18 C -0.56 -30.91 9.39 25.60 0.24 -30.67 16 19 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 20 C 0.02 1.30 5.46 84.65 0.46 1.76 16 21 N -0.92 -51.51 13.29 21.45 0.28 -51.22 16 22 Si 0.97 42.81 29.54 68.60 2.03 44.84 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 27 H 0.07 2.76 7.71 -2.39 -0.02 2.75 16 28 H 0.10 3.60 6.50 -2.38 -0.02 3.59 16 29 H 0.41 6.88 7.35 -92.71 -0.68 6.20 16 30 H 0.06 1.34 7.77 -2.38 -0.02 1.32 16 31 H 0.06 1.24 7.87 -2.39 -0.02 1.22 16 32 H 0.09 1.24 7.94 -2.39 -0.02 1.22 16 33 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 0.72 7.90 -2.39 -0.02 0.70 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.78 7.83 -2.39 -0.02 0.76 16 37 H 0.23 4.71 7.50 -2.91 -0.02 4.69 16 38 H 0.05 2.60 7.64 -2.39 -0.02 2.58 16 39 H 0.03 1.78 8.14 -2.38 -0.02 1.77 16 40 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -67.49 340.21 3.08 -64.40 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.36 Total: 17.79 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 4.96 Total: -2.31 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -4.21 Total: -102.26 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.06 Total: -22.47 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -67.49 3.08 -64.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895722809.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.218 kcal (2) G-P(sol) polarization free energy of solvation -67.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds