Wall clock time and date at job start Mon Mar 30 2020 02:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38053 * 126.29195 * 2 1 4 4 C 1.47423 * 126.41189 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00723 * 0.31924 * 4 3 2 6 6 N 1.34787 * 119.99567 * 180.31502 * 4 3 2 7 7 C 1.47020 * 125.64589 * 359.69377 * 6 4 3 8 8 C 1.54337 * 107.26260 * 178.85010 * 7 6 4 9 9 C 1.55161 * 103.01799 * 338.13820 * 8 7 6 10 10 H 1.08994 * 111.00755 * 277.23213 * 9 8 7 11 11 C 1.53001 * 111.03363 * 153.39871 * 9 8 7 12 12 C 1.47429 * 125.64450 * 180.02562 * 6 4 3 13 13 C 1.41282 * 107.16787 * 180.26278 * 3 2 1 14 14 N 1.30446 * 108.02455 * 359.74449 * 13 3 2 15 15 N 1.34260 * 126.28993 * 179.82352 * 2 1 3 16 16 C 1.46491 * 125.75289 * 359.97438 * 15 2 1 17 17 C 1.50702 * 109.46957 * 269.71589 * 16 15 2 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 H 1.08999 * 109.47303 * 270.20753 * 1 2 3 26 26 H 1.09007 * 109.47162 * 30.20198 * 1 2 3 27 27 H 1.08996 * 109.47531 * 150.20383 * 1 2 3 28 28 H 1.08999 * 109.88365 * 298.38978 * 7 6 4 29 29 H 1.08995 * 109.88268 * 59.56296 * 7 6 4 30 30 H 1.08995 * 110.84696 * 219.67671 * 8 7 6 31 31 H 1.09000 * 110.67030 * 96.52213 * 8 7 6 32 32 H 1.09000 * 109.47335 * 306.33060 * 11 9 8 33 33 H 1.09001 * 109.47463 * 66.33273 * 11 9 8 34 34 H 1.09004 * 109.47071 * 186.33201 * 11 9 8 35 35 H 1.09001 * 110.36505 * 322.93072 * 12 6 4 36 36 H 1.09001 * 110.36389 * 85.14707 * 12 6 4 37 37 H 1.08001 * 125.99061 * 179.77382 * 13 3 2 38 38 H 1.09004 * 109.47166 * 149.71854 * 16 15 2 39 39 H 1.08994 * 109.47507 * 29.71561 * 16 15 2 40 40 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7879 0.0048 6 7 2.8000 3.5107 -0.0069 7 6 4.2591 3.3300 -0.0073 8 6 4.8947 4.7359 -0.0452 9 6 3.7583 5.6177 -0.6269 10 1 3.7355 5.5582 -1.7150 11 6 3.8971 7.0690 -0.1628 12 6 2.5024 4.9547 -0.0076 13 6 3.6590 0.6499 -0.0062 14 7 3.6340 -0.6543 -0.0041 15 7 2.3017 -1.0822 0.0033 16 6 1.8500 -2.4757 0.0082 17 6 1.7024 -2.9510 1.4306 18 1 1.9225 -2.2817 2.2492 19 6 1.2802 -4.2383 1.6871 20 7 1.0118 -5.0531 0.6903 21 14 1.0898 -4.8249 3.4503 22 1 -0.2909 -4.5440 3.9191 23 1 1.3473 -6.2859 3.5164 24 1 2.0617 -4.1113 4.3172 25 1 -0.3634 0.0037 1.0276 26 1 -0.3634 0.8882 -0.5170 27 1 -0.3634 -0.8917 -0.5106 28 1 4.5679 2.8057 0.8971 29 1 4.5623 2.7642 -0.8882 30 1 5.7666 4.7498 -0.6991 31 1 5.1622 5.0644 0.9590 32 1 3.9608 7.0981 0.9250 33 1 4.8006 7.5027 -0.5914 34 1 3.0288 7.6402 -0.4913 35 1 1.6240 5.1606 -0.6194 36 1 2.3465 5.3103 1.0109 37 1 4.5449 1.2676 -0.0112 38 1 2.5821 -3.0967 -0.5082 39 1 0.8888 -2.5480 -0.5006 40 1 0.7151 -5.9589 0.8707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896047751.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:15 Heat of formation + Delta-G solvation = 30.858591 kcal Electronic energy + Delta-G solvation = -21464.241877 eV Core-core repulsion = 18280.254416 eV Total energy + Delta-G solvation = -3183.987462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.85392 -39.45743 -37.27435 -33.96446 -33.05104 -31.96978 -31.07251 -29.77209 -27.94325 -26.73295 -25.93415 -23.56182 -23.38780 -21.04898 -20.56483 -19.83087 -18.36984 -16.94993 -16.75063 -16.19729 -15.38645 -15.16197 -14.65973 -14.56580 -14.17753 -13.88888 -13.48270 -13.23602 -13.00655 -12.64381 -12.59889 -12.42009 -12.33938 -12.05998 -11.95927 -11.72124 -11.45775 -11.15735 -11.06420 -10.91652 -10.88382 -10.82054 -10.35560 -10.15565 -9.92017 -9.36855 -8.70187 -8.62013 -8.47401 -7.87331 -6.32767 -4.40415 2.20974 2.83217 3.10777 3.18705 3.25151 3.29743 3.46156 3.91030 4.25118 4.25579 4.43302 4.61853 5.00520 5.04148 5.15517 5.17084 5.20110 5.25705 5.43821 5.44896 5.52060 5.62471 5.65234 5.72914 5.77669 5.84963 5.88295 5.92786 6.07783 6.14646 6.38031 6.52674 6.60539 6.83080 6.92389 7.19151 7.57473 7.75216 7.78352 7.81048 8.39952 8.60826 8.65749 9.26356 10.75496 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034146 B = 0.003759 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.803348 B = 7446.577534 C = 7630.943200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.165 3.835 3 C -0.329 4.329 4 C 0.618 3.382 5 O -0.556 6.556 6 N -0.622 5.622 7 C 0.096 3.904 8 C -0.130 4.130 9 C -0.107 4.107 10 H 0.084 0.916 11 C -0.140 4.140 12 C 0.114 3.886 13 C 0.045 3.955 14 N -0.297 5.297 15 N -0.314 5.314 16 C 0.251 3.749 17 C -0.539 4.539 18 H 0.065 0.935 19 C 0.067 3.933 20 N -0.890 5.890 21 Si 0.908 3.092 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.272 1.272 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.185 0.815 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.784 19.111 -2.685 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.027 3.973 3 C -0.344 4.344 4 C 0.411 3.589 5 O -0.435 6.435 6 N -0.357 5.357 7 C -0.027 4.027 8 C -0.168 4.168 9 C -0.127 4.127 10 H 0.102 0.898 11 C -0.198 4.198 12 C -0.009 4.009 13 C -0.142 4.142 14 N -0.117 5.117 15 N -0.091 5.091 16 C 0.134 3.866 17 C -0.578 4.578 18 H 0.083 0.917 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.196 1.196 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.202 0.798 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.719 17.704 -2.733 18.804 hybrid contribution -0.371 0.184 0.968 1.053 sum 5.347 17.888 -1.765 18.753 Atomic orbital electron populations 1.20564 0.86810 1.03732 1.03924 1.21460 0.94932 0.86512 0.94376 1.19599 0.93203 0.92240 1.29373 1.16991 0.84064 0.83286 0.74519 1.90690 1.16224 1.84164 1.52442 1.48141 1.06213 1.05788 1.75529 1.22312 0.80823 0.97586 1.01975 1.22768 0.97954 0.94005 1.02033 1.22372 0.94695 0.94955 1.00640 0.89769 1.21689 1.01953 0.94682 1.01454 1.22198 0.97845 0.80181 1.00661 1.24370 0.96955 0.92608 1.00226 1.77146 0.98585 1.12382 1.23617 1.49374 1.02556 1.08268 1.48859 1.19848 0.96400 0.70948 0.99434 1.21253 1.47284 0.98246 0.91002 0.91673 1.24926 0.94447 0.95972 0.98330 1.69917 1.44409 1.07211 1.31208 0.86317 0.78761 0.77935 0.83485 1.20202 1.20786 1.19628 0.89845 0.88881 0.90855 0.90879 0.90873 0.90033 0.90493 0.92314 0.92216 0.92295 0.90594 0.91785 0.79832 0.92517 0.92578 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 9.56 36.01 0.34 -1.39 16 2 C 0.16 3.48 7.01 -81.60 -0.57 2.91 16 3 C -0.33 -6.37 6.09 -105.07 -0.64 -7.01 16 4 C 0.62 11.16 7.85 -12.52 -0.10 11.06 16 5 O -0.56 -11.30 15.10 5.28 0.08 -11.22 16 6 N -0.62 -8.65 3.33 -171.76 -0.57 -9.22 16 7 C 0.10 1.01 4.98 -3.06 -0.02 1.00 16 8 C -0.13 -0.97 6.42 -24.89 -0.16 -1.13 16 9 C -0.11 -0.86 3.64 -88.46 -0.32 -1.18 16 10 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 11 C -0.14 -0.86 9.30 37.16 0.35 -0.52 16 12 C 0.11 1.28 6.37 -2.52 -0.02 1.26 16 13 C 0.04 0.82 10.45 -16.98 -0.18 0.64 16 14 N -0.30 -6.57 12.50 30.86 0.39 -6.19 16 15 N -0.31 -7.28 3.56 -57.78 -0.21 -7.49 16 16 C 0.25 6.35 5.97 -5.20 -0.03 6.31 16 17 C -0.54 -14.73 9.39 -34.44 -0.32 -15.05 16 18 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 19 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 20 N -0.89 -24.80 13.29 55.43 0.74 -24.06 16 21 Si 0.91 20.99 29.54 -169.99 -5.02 15.96 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 26 H 0.09 1.68 6.52 -51.93 -0.34 1.34 16 27 H 0.07 1.33 7.05 -51.93 -0.37 0.96 16 28 H 0.07 0.77 7.02 -51.93 -0.36 0.40 16 29 H 0.07 0.74 6.81 -51.93 -0.35 0.39 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.53 8.01 -51.93 -0.42 0.11 16 32 H 0.06 0.35 8.11 -51.93 -0.42 -0.07 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 36 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 37 H 0.19 2.55 4.47 -52.49 -0.23 2.31 16 38 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.06 1.41 7.01 -51.93 -0.36 1.04 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -31.46 327.16 -7.20 -38.66 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.77 Total: -0.01 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.76 Total: -1.37 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.35 Total: -46.96 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.46 -7.20 -38.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896047751.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.523 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds