Wall clock time and date at job start Mon Mar 30 2020 02:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38053 * 126.29195 * 2 1 4 4 C 1.47423 * 126.41189 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00723 * 0.31924 * 4 3 2 6 6 N 1.34787 * 119.99567 * 180.31502 * 4 3 2 7 7 C 1.47020 * 125.64589 * 359.69377 * 6 4 3 8 8 C 1.54337 * 107.26260 * 178.85010 * 7 6 4 9 9 C 1.55161 * 103.01799 * 338.13820 * 8 7 6 10 10 H 1.08994 * 111.00755 * 277.23213 * 9 8 7 11 11 C 1.53001 * 111.03363 * 153.39871 * 9 8 7 12 12 C 1.47429 * 125.64450 * 180.02562 * 6 4 3 13 13 C 1.41282 * 107.16787 * 180.26278 * 3 2 1 14 14 N 1.30446 * 108.02455 * 359.74449 * 13 3 2 15 15 N 1.34260 * 126.28993 * 179.82352 * 2 1 3 16 16 C 1.46491 * 125.75289 * 359.97438 * 15 2 1 17 17 C 1.50702 * 109.46957 * 269.71589 * 16 15 2 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 H 1.08999 * 109.47303 * 270.20753 * 1 2 3 26 26 H 1.09007 * 109.47162 * 30.20198 * 1 2 3 27 27 H 1.08996 * 109.47531 * 150.20383 * 1 2 3 28 28 H 1.08999 * 109.88365 * 298.38978 * 7 6 4 29 29 H 1.08995 * 109.88268 * 59.56296 * 7 6 4 30 30 H 1.08995 * 110.84696 * 219.67671 * 8 7 6 31 31 H 1.09000 * 110.67030 * 96.52213 * 8 7 6 32 32 H 1.09000 * 109.47335 * 306.33060 * 11 9 8 33 33 H 1.09001 * 109.47463 * 66.33273 * 11 9 8 34 34 H 1.09004 * 109.47071 * 186.33201 * 11 9 8 35 35 H 1.09001 * 110.36505 * 322.93072 * 12 6 4 36 36 H 1.09001 * 110.36389 * 85.14707 * 12 6 4 37 37 H 1.08001 * 125.99061 * 179.77382 * 13 3 2 38 38 H 1.09004 * 109.47166 * 149.71854 * 16 15 2 39 39 H 1.08994 * 109.47507 * 29.71561 * 16 15 2 40 40 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7879 0.0048 6 7 2.8000 3.5107 -0.0069 7 6 4.2591 3.3300 -0.0073 8 6 4.8947 4.7359 -0.0452 9 6 3.7583 5.6177 -0.6269 10 1 3.7355 5.5582 -1.7150 11 6 3.8971 7.0690 -0.1628 12 6 2.5024 4.9547 -0.0076 13 6 3.6590 0.6499 -0.0062 14 7 3.6340 -0.6543 -0.0041 15 7 2.3017 -1.0822 0.0033 16 6 1.8500 -2.4757 0.0082 17 6 1.7024 -2.9510 1.4306 18 1 1.9225 -2.2817 2.2492 19 6 1.2802 -4.2383 1.6871 20 7 1.0118 -5.0531 0.6903 21 14 1.0898 -4.8249 3.4503 22 1 -0.2909 -4.5440 3.9191 23 1 1.3473 -6.2859 3.5164 24 1 2.0617 -4.1113 4.3172 25 1 -0.3634 0.0037 1.0276 26 1 -0.3634 0.8882 -0.5170 27 1 -0.3634 -0.8917 -0.5106 28 1 4.5679 2.8057 0.8971 29 1 4.5623 2.7642 -0.8882 30 1 5.7666 4.7498 -0.6991 31 1 5.1622 5.0644 0.9590 32 1 3.9608 7.0981 0.9250 33 1 4.8006 7.5027 -0.5914 34 1 3.0288 7.6402 -0.4913 35 1 1.6240 5.1606 -0.6194 36 1 2.3465 5.3103 1.0109 37 1 4.5449 1.2676 -0.0112 38 1 2.5821 -3.0967 -0.5082 39 1 0.8888 -2.5480 -0.5006 40 1 0.7151 -5.9589 0.8707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896047751.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:15 Heat of formation + Delta-G solvation = 11.429558 kcal Electronic energy + Delta-G solvation = -21465.084383 eV Core-core repulsion = 18280.254416 eV Total energy + Delta-G solvation = -3184.829968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.40785 -40.61717 -38.45187 -35.85626 -34.28809 -33.52002 -32.71175 -30.59657 -29.48682 -28.39618 -27.03850 -25.27327 -24.58079 -22.38678 -21.51814 -21.08017 -19.83337 -18.87989 -18.19227 -17.27374 -16.92371 -16.53284 -16.40966 -16.02038 -15.39643 -15.02576 -14.64442 -14.36492 -14.27177 -14.13201 -13.84513 -13.71626 -13.62297 -13.48959 -13.19063 -13.02849 -12.96028 -12.70329 -12.59846 -12.33052 -11.88257 -11.84998 -11.75886 -11.52665 -11.48032 -10.83211 -10.77117 -10.30180 -9.76983 -9.38447 -8.39337 -6.55860 0.63070 1.28862 1.36784 1.37537 1.47946 1.63094 2.11122 2.31633 2.46992 2.92834 3.47403 3.68493 3.70998 3.82476 3.99801 4.06574 4.19985 4.33057 4.36317 4.50293 4.58184 4.62218 4.68936 4.74760 4.80570 4.87098 4.93000 4.99766 5.04112 5.09227 5.12385 5.22715 5.35696 5.41325 5.47613 5.53855 5.65672 5.73021 6.01681 6.52781 6.53042 6.79117 7.15213 7.24911 8.68740 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034146 B = 0.003759 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.803348 B = 7446.577534 C = 7630.943200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.145 3.855 3 C -0.330 4.330 4 C 0.613 3.387 5 O -0.587 6.587 6 N -0.618 5.618 7 C 0.082 3.918 8 C -0.119 4.119 9 C -0.098 4.098 10 H 0.086 0.914 11 C -0.136 4.136 12 C 0.106 3.894 13 C 0.067 3.933 14 N -0.335 5.335 15 N -0.336 5.336 16 C 0.267 3.733 17 C -0.557 4.557 18 H 0.051 0.949 19 C 0.024 3.976 20 N -0.916 5.916 21 Si 0.973 3.027 22 H -0.266 1.266 23 H -0.272 1.272 24 H -0.274 1.274 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.229 0.771 38 H 0.033 0.967 39 H 0.051 0.949 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.219 21.014 -2.004 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.009 3.991 3 C -0.345 4.345 4 C 0.404 3.596 5 O -0.470 6.470 6 N -0.350 5.350 7 C -0.040 4.040 8 C -0.156 4.156 9 C -0.117 4.117 10 H 0.104 0.896 11 C -0.194 4.194 12 C -0.016 4.016 13 C -0.119 4.119 14 N -0.154 5.154 15 N -0.113 5.113 16 C 0.148 3.852 17 C -0.595 4.595 18 H 0.069 0.931 19 C -0.177 4.177 20 N -0.554 5.554 21 Si 0.796 3.204 22 H -0.191 1.191 23 H -0.197 1.197 24 H -0.198 1.198 25 H 0.101 0.899 26 H 0.118 0.882 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.245 0.755 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.187 19.648 -2.062 21.023 hybrid contribution -0.766 -0.266 0.713 1.080 sum 6.421 19.382 -1.349 20.463 Atomic orbital electron populations 1.20542 0.85792 1.04014 1.03957 1.21948 0.95955 0.86666 0.94515 1.19900 0.93456 0.92831 1.28307 1.16859 0.84266 0.83466 0.74971 1.90664 1.17607 1.84554 1.54135 1.48198 1.07320 1.06206 1.73315 1.22618 0.78787 1.00169 1.02427 1.22780 0.98105 0.91375 1.03365 1.22346 0.92869 0.95897 1.00564 0.89587 1.21673 1.02769 0.93231 1.01714 1.22448 0.99300 0.78786 1.01086 1.25075 0.98008 0.91598 0.97265 1.77100 0.98325 1.14330 1.25677 1.49138 1.03391 1.07767 1.51041 1.19392 0.95342 0.72227 0.98229 1.21386 1.47985 0.98642 0.91486 0.93086 1.25738 0.93742 0.95850 1.02399 1.69997 1.44622 1.07657 1.33154 0.85331 0.78947 0.77682 0.78413 1.19138 1.19727 1.19840 0.89872 0.88197 0.90815 0.90515 0.90180 0.87585 0.89319 0.92028 0.90647 0.92273 0.91978 0.91359 0.75527 0.94914 0.93126 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.28 9.56 71.24 0.68 -2.60 16 2 C 0.15 6.27 7.01 42.14 0.30 6.56 16 3 C -0.33 -12.69 6.09 -20.15 -0.12 -12.81 16 4 C 0.61 21.79 7.85 86.66 0.68 22.47 16 5 O -0.59 -24.00 15.10 -4.04 -0.06 -24.06 16 6 N -0.62 -16.16 3.33 -815.59 -2.71 -18.87 16 7 C 0.08 1.47 4.98 86.73 0.43 1.91 16 8 C -0.12 -1.30 6.42 31.79 0.20 -1.10 16 9 C -0.10 -1.25 3.64 -9.39 -0.03 -1.29 16 10 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 11 C -0.14 -1.22 9.30 71.98 0.67 -0.55 16 12 C 0.11 2.19 6.37 86.86 0.55 2.74 16 13 C 0.07 2.36 10.45 85.65 0.89 3.26 16 14 N -0.33 -14.88 12.50 -56.28 -0.70 -15.59 16 15 N -0.34 -16.05 3.56 -336.71 -1.20 -17.24 16 16 C 0.27 14.03 5.97 85.64 0.51 14.54 16 17 C -0.56 -31.17 9.39 25.60 0.24 -30.93 16 18 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 19 C 0.02 1.32 5.46 84.66 0.46 1.78 16 20 N -0.92 -51.65 13.29 21.45 0.28 -51.37 16 21 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 26 H 0.10 3.68 6.52 -2.38 -0.02 3.66 16 27 H 0.07 2.78 7.05 -2.39 -0.02 2.76 16 28 H 0.08 1.36 7.02 -2.39 -0.02 1.35 16 29 H 0.08 1.36 6.81 -2.39 -0.02 1.34 16 30 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.83 8.01 -2.39 -0.02 0.81 16 32 H 0.06 0.54 8.11 -2.39 -0.02 0.52 16 33 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 1.46 8.04 -2.39 -0.02 1.44 16 36 H 0.07 1.37 8.04 -2.39 -0.02 1.35 16 37 H 0.23 5.67 4.47 -2.91 -0.01 5.66 16 38 H 0.03 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.05 2.66 7.01 -2.39 -0.02 2.65 16 40 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 Total: -1.00 -69.18 327.16 4.14 -65.04 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 1.04 Total: 13.06 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 5.47 Total: 3.99 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -4.33 Total: -103.07 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.06 Total: -24.06 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -69.18 4.14 -65.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896047751.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.465 kcal (2) G-P(sol) polarization free energy of solvation -69.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds