Wall clock time and date at job start Mon Mar 30 2020 02:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38050 * 126.28920 * 2 1 4 4 C 1.47428 * 126.41232 * 0.04003 * 3 2 1 5 5 O 1.21604 * 120.00173 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99808 * 180.02562 * 4 3 2 7 7 C 1.47026 * 125.64730 * 0.02583 * 6 4 3 8 8 C 1.54324 * 107.26646 * 181.02270 * 7 6 4 9 9 C 1.55157 * 102.94501 * 22.19401 * 8 7 6 10 10 H 1.08996 * 111.00510 * 82.57131 * 9 8 7 11 11 C 1.53000 * 111.00327 * 206.38749 * 9 8 7 12 12 C 1.47421 * 125.64639 * 179.71549 * 6 4 3 13 13 C 1.41290 * 107.17116 * 180.02562 * 3 2 1 14 14 N 1.30444 * 108.02445 * 359.97438 * 13 3 2 15 15 N 1.34260 * 126.29796 * 180.02562 * 2 1 3 16 16 C 1.46504 * 125.74913 * 0.24232 * 15 2 1 17 17 C 1.50694 * 109.47394 * 269.71456 * 16 15 2 18 18 H 1.08006 * 119.99910 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00086 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99893 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00081 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46849 * 90.00419 * 21 19 17 23 23 H 1.48495 * 109.47255 * 210.00040 * 21 19 17 24 24 H 1.48492 * 109.47178 * 330.00452 * 21 19 17 25 25 H 1.08998 * 109.47530 * 269.99542 * 1 2 3 26 26 H 1.08997 * 109.47453 * 30.00522 * 1 2 3 27 27 H 1.09009 * 109.46827 * 150.00059 * 1 2 3 28 28 H 1.08999 * 109.88161 * 300.43913 * 7 6 4 29 29 H 1.08993 * 109.88087 * 61.45137 * 7 6 4 30 30 H 1.09002 * 110.71385 * 140.55249 * 8 7 6 31 31 H 1.08997 * 110.71905 * 263.64804 * 8 7 6 32 32 H 1.09000 * 109.47569 * 59.99371 * 11 9 8 33 33 H 1.08998 * 109.46993 * 179.97438 * 11 9 8 34 34 H 1.09004 * 109.46609 * 299.99758 * 11 9 8 35 35 H 1.08998 * 110.36841 * 274.74546 * 12 6 4 36 36 H 1.09002 * 110.36991 * 37.07301 * 12 6 4 37 37 H 1.08004 * 125.98675 * 179.97438 * 13 3 2 38 38 H 1.09000 * 109.47108 * 29.72017 * 16 15 2 39 39 H 1.09000 * 109.46725 * 149.71644 * 16 15 2 40 40 H 0.97002 * 119.99591 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8856 2.5203 0.0008 5 8 0.6994 2.7877 0.0011 6 7 2.7997 3.5108 0.0002 7 6 4.2588 3.3302 -0.0018 8 6 4.8945 4.7362 0.0245 9 6 3.7613 5.6190 0.6109 10 1 3.7448 5.5615 1.6992 11 6 3.8984 7.0694 0.1433 12 6 2.5020 4.9547 -0.0050 13 6 3.6590 0.6500 -0.0006 14 7 3.6341 -0.6542 -0.0004 15 7 2.3017 -1.0821 -0.0005 16 6 1.8502 -2.4758 -0.0061 17 6 1.6972 -2.9601 1.4126 18 1 1.9142 -2.2960 2.2363 19 6 1.2802 -4.2509 1.6593 20 7 1.1463 -4.6734 2.8976 21 14 0.9042 -5.3992 0.2348 22 1 2.1366 -6.1347 -0.1467 23 1 -0.1439 -6.3684 0.6437 24 1 0.4212 -4.6076 -0.9249 25 1 -0.3634 -0.0001 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8901 -0.5139 28 1 4.5641 2.7688 0.8812 29 1 4.5653 2.7991 -0.9029 30 1 5.7701 4.7514 0.6734 31 1 5.1570 5.0596 -0.9828 32 1 3.8433 7.1072 -0.9446 33 1 3.0913 7.6660 0.5686 34 1 4.8579 7.4681 0.4726 35 1 2.3453 5.3060 -1.0249 36 1 1.6253 5.1635 0.6080 37 1 4.5448 1.2679 -0.0012 38 1 0.8909 -2.5448 -0.5191 39 1 2.5842 -3.0934 -0.5237 40 1 0.8525 -5.5814 3.0711 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896047752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:18 Heat of formation + Delta-G solvation = 36.970432 kcal Electronic energy + Delta-G solvation = -21493.763751 eV Core-core repulsion = 18310.041318 eV Total energy + Delta-G solvation = -3183.722432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.93705 -39.49583 -37.30305 -33.99759 -33.03948 -32.07674 -31.24582 -29.79664 -28.27962 -26.98982 -25.98588 -23.59326 -23.05965 -21.11274 -20.56986 -19.81166 -18.42434 -17.21953 -16.94308 -16.25925 -15.44125 -15.20822 -14.78689 -14.47344 -14.18045 -13.79884 -13.68589 -13.25693 -13.03002 -12.71596 -12.63421 -12.57538 -12.42502 -12.20849 -11.99023 -11.96449 -11.60555 -11.23652 -11.10904 -10.92395 -10.86718 -10.79856 -10.38027 -10.23677 -9.78921 -9.41992 -8.84577 -8.67602 -8.51645 -7.93441 -6.32582 -4.37181 2.13879 2.75711 3.02784 3.12167 3.17273 3.19780 3.35512 3.85985 4.15865 4.24306 4.41967 4.61631 4.92752 5.01816 5.12030 5.13842 5.18595 5.20100 5.38627 5.43204 5.50098 5.58839 5.63537 5.66047 5.73343 5.82521 5.84801 5.88641 6.04799 6.07860 6.26431 6.38185 6.50355 6.52722 6.61587 7.05032 7.18802 7.57947 7.72014 8.20617 8.29054 8.57369 8.70795 9.21329 10.79709 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038289 B = 0.003811 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.111099 B = 7344.995594 C = 7615.471996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.168 3.832 3 C -0.326 4.326 4 C 0.618 3.382 5 O -0.555 6.555 6 N -0.622 5.622 7 C 0.095 3.905 8 C -0.129 4.129 9 C -0.108 4.108 10 H 0.085 0.915 11 C -0.140 4.140 12 C 0.114 3.886 13 C 0.048 3.952 14 N -0.295 5.295 15 N -0.314 5.314 16 C 0.224 3.776 17 C -0.545 4.545 18 H 0.082 0.918 19 C 0.081 3.919 20 N -0.883 5.883 21 Si 0.874 3.126 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.264 1.264 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.187 0.813 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.548 18.568 -7.441 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.032 3.968 3 C -0.341 4.341 4 C 0.411 3.589 5 O -0.434 6.434 6 N -0.356 5.356 7 C -0.028 4.028 8 C -0.167 4.167 9 C -0.127 4.127 10 H 0.103 0.897 11 C -0.198 4.198 12 C -0.009 4.009 13 C -0.138 4.138 14 N -0.114 5.114 15 N -0.090 5.090 16 C 0.106 3.894 17 C -0.583 4.583 18 H 0.100 0.900 19 C -0.124 4.124 20 N -0.520 5.520 21 Si 0.700 3.300 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.189 1.189 25 H 0.105 0.895 26 H 0.113 0.887 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.204 0.796 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.485 17.191 -7.321 19.473 hybrid contribution -0.436 -0.128 -0.459 0.646 sum 5.049 17.063 -7.780 19.421 Atomic orbital electron populations 1.20592 0.86705 1.03654 1.04229 1.21443 0.94934 0.86355 0.94095 1.19600 0.93161 0.92313 1.29014 1.16957 0.84092 0.83239 0.74576 1.90695 1.16193 1.84141 1.52367 1.48135 1.06222 1.05828 1.75438 1.22322 0.80795 0.97667 1.01987 1.22757 0.98029 0.93940 1.02011 1.22416 0.94628 0.94931 1.00729 0.89665 1.21688 1.01976 0.94701 1.01407 1.22251 0.97925 0.80078 1.00609 1.24402 0.97040 0.92514 0.99877 1.77153 0.98067 1.12508 1.23694 1.48912 1.02828 1.07499 1.49784 1.20157 0.95727 0.73347 1.00208 1.21093 1.48008 0.99141 0.90053 0.90040 1.24795 0.94285 0.97400 0.95900 1.69869 1.45254 1.18031 1.18818 0.86881 0.79083 0.81448 0.82573 1.19522 1.20400 1.18862 0.89469 0.88697 0.91084 0.90797 0.90935 0.90005 0.90486 0.92344 0.92305 0.92178 0.91747 0.90537 0.79626 0.92985 0.93163 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.57 36.00 0.34 -1.37 16 2 C 0.17 3.49 7.01 -81.60 -0.57 2.92 16 3 C -0.33 -6.20 6.09 -105.06 -0.64 -6.84 16 4 C 0.62 10.99 7.85 -12.52 -0.10 10.90 16 5 O -0.55 -11.12 15.09 5.27 0.08 -11.04 16 6 N -0.62 -8.51 3.32 -171.64 -0.57 -9.08 16 7 C 0.10 0.98 4.99 -3.06 -0.02 0.97 16 8 C -0.13 -0.95 6.41 -24.90 -0.16 -1.11 16 9 C -0.11 -0.86 3.65 -88.35 -0.32 -1.18 16 10 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 11 C -0.14 -0.85 9.31 37.16 0.35 -0.50 16 12 C 0.11 1.26 6.38 -2.41 -0.02 1.24 16 13 C 0.05 0.86 10.44 -16.98 -0.18 0.69 16 14 N -0.29 -6.36 12.50 30.86 0.39 -5.98 16 15 N -0.31 -7.08 3.56 -57.77 -0.21 -7.29 16 16 C 0.22 5.30 5.04 -5.19 -0.03 5.27 16 17 C -0.54 -15.08 9.94 -34.44 -0.34 -15.43 16 18 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 19 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 20 N -0.88 -26.02 13.96 55.43 0.77 -25.25 16 21 Si 0.87 19.92 27.47 -169.99 -4.67 15.25 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 25 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 26 H 0.09 1.66 6.50 -51.93 -0.34 1.32 16 27 H 0.07 1.21 7.05 -51.92 -0.37 0.84 16 28 H 0.07 0.77 6.83 -51.93 -0.35 0.42 16 29 H 0.07 0.71 6.99 -51.93 -0.36 0.35 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 32 H 0.06 0.34 8.07 -51.93 -0.42 -0.08 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.67 7.99 -51.93 -0.41 0.25 16 36 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 37 H 0.19 2.51 4.47 -52.48 -0.23 2.27 16 38 H 0.05 1.15 6.07 -51.93 -0.32 0.83 16 39 H 0.05 1.17 7.57 -51.93 -0.39 0.78 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 323.50 15.07 4.88 4.88 Total: -1.00 -32.72 323.50 -6.84 -39.57 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.74 Total: 1.25 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.78 Total: -2.31 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.38 Total: -47.59 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.67 Total: 15.25 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.72 -6.84 -39.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896047752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.537 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds