Wall clock time and date at job start Mon Mar 30 2020 02:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38050 * 126.28920 * 2 1 4 4 C 1.47428 * 126.41232 * 0.04003 * 3 2 1 5 5 O 1.21604 * 120.00173 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99808 * 180.02562 * 4 3 2 7 7 C 1.47026 * 125.64730 * 0.02583 * 6 4 3 8 8 C 1.54324 * 107.26646 * 181.02270 * 7 6 4 9 9 C 1.55157 * 102.94501 * 22.19401 * 8 7 6 10 10 H 1.08996 * 111.00510 * 82.57131 * 9 8 7 11 11 C 1.53000 * 111.00327 * 206.38749 * 9 8 7 12 12 C 1.47421 * 125.64639 * 179.71549 * 6 4 3 13 13 C 1.41290 * 107.17116 * 180.02562 * 3 2 1 14 14 N 1.30444 * 108.02445 * 359.97438 * 13 3 2 15 15 N 1.34260 * 126.29796 * 180.02562 * 2 1 3 16 16 C 1.46504 * 125.74913 * 0.24232 * 15 2 1 17 17 C 1.50694 * 109.47394 * 269.71456 * 16 15 2 18 18 H 1.08006 * 119.99910 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00086 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99893 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00081 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46849 * 90.00419 * 21 19 17 23 23 H 1.48495 * 109.47255 * 210.00040 * 21 19 17 24 24 H 1.48492 * 109.47178 * 330.00452 * 21 19 17 25 25 H 1.08998 * 109.47530 * 269.99542 * 1 2 3 26 26 H 1.08997 * 109.47453 * 30.00522 * 1 2 3 27 27 H 1.09009 * 109.46827 * 150.00059 * 1 2 3 28 28 H 1.08999 * 109.88161 * 300.43913 * 7 6 4 29 29 H 1.08993 * 109.88087 * 61.45137 * 7 6 4 30 30 H 1.09002 * 110.71385 * 140.55249 * 8 7 6 31 31 H 1.08997 * 110.71905 * 263.64804 * 8 7 6 32 32 H 1.09000 * 109.47569 * 59.99371 * 11 9 8 33 33 H 1.08998 * 109.46993 * 179.97438 * 11 9 8 34 34 H 1.09004 * 109.46609 * 299.99758 * 11 9 8 35 35 H 1.08998 * 110.36841 * 274.74546 * 12 6 4 36 36 H 1.09002 * 110.36991 * 37.07301 * 12 6 4 37 37 H 1.08004 * 125.98675 * 179.97438 * 13 3 2 38 38 H 1.09000 * 109.47108 * 29.72017 * 16 15 2 39 39 H 1.09000 * 109.46725 * 149.71644 * 16 15 2 40 40 H 0.97002 * 119.99591 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8856 2.5203 0.0008 5 8 0.6994 2.7877 0.0011 6 7 2.7997 3.5108 0.0002 7 6 4.2588 3.3302 -0.0018 8 6 4.8945 4.7362 0.0245 9 6 3.7613 5.6190 0.6109 10 1 3.7448 5.5615 1.6992 11 6 3.8984 7.0694 0.1433 12 6 2.5020 4.9547 -0.0050 13 6 3.6590 0.6500 -0.0006 14 7 3.6341 -0.6542 -0.0004 15 7 2.3017 -1.0821 -0.0005 16 6 1.8502 -2.4758 -0.0061 17 6 1.6972 -2.9601 1.4126 18 1 1.9142 -2.2960 2.2363 19 6 1.2802 -4.2509 1.6593 20 7 1.1463 -4.6734 2.8976 21 14 0.9042 -5.3992 0.2348 22 1 2.1366 -6.1347 -0.1467 23 1 -0.1439 -6.3684 0.6437 24 1 0.4212 -4.6076 -0.9249 25 1 -0.3634 -0.0001 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8901 -0.5139 28 1 4.5641 2.7688 0.8812 29 1 4.5653 2.7991 -0.9029 30 1 5.7701 4.7514 0.6734 31 1 5.1570 5.0596 -0.9828 32 1 3.8433 7.1072 -0.9446 33 1 3.0913 7.6660 0.5686 34 1 4.8579 7.4681 0.4726 35 1 2.3453 5.3060 -1.0249 36 1 1.6253 5.1635 0.6080 37 1 4.5448 1.2679 -0.0012 38 1 0.8909 -2.5448 -0.5191 39 1 2.5842 -3.0934 -0.5237 40 1 0.8525 -5.5814 3.0711 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896047752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:18 Heat of formation + Delta-G solvation = 15.192490 kcal Electronic energy + Delta-G solvation = -21494.708113 eV Core-core repulsion = 18310.041318 eV Total energy + Delta-G solvation = -3184.666795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.44431 -40.63195 -38.46122 -35.82270 -34.33840 -33.60484 -32.84767 -30.62381 -29.86721 -28.50265 -27.04819 -24.90537 -24.59636 -22.42104 -21.47642 -21.07994 -19.85291 -19.30411 -18.24254 -17.29623 -16.93198 -16.62435 -16.31080 -15.92584 -15.48679 -15.08963 -14.64627 -14.55603 -14.29329 -14.20144 -13.90786 -13.81024 -13.70502 -13.51789 -13.22010 -13.08091 -12.98958 -12.61083 -12.58640 -12.14987 -11.87101 -11.85700 -11.77823 -11.53712 -11.48122 -10.93611 -10.85253 -10.30922 -9.77839 -9.39555 -8.44533 -6.56946 0.59449 1.26386 1.32501 1.35498 1.44061 1.58648 2.09701 2.23514 2.44958 2.87902 3.45732 3.66906 3.67933 3.79045 3.99505 4.03679 4.15833 4.31927 4.32351 4.41377 4.49602 4.61377 4.64961 4.67249 4.69542 4.80212 4.92629 4.98862 5.01682 5.07340 5.08517 5.15629 5.22395 5.35311 5.39566 5.52429 5.61443 5.80211 6.18355 6.45793 6.51829 6.72981 7.06927 7.23377 8.72072 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038289 B = 0.003811 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.111099 B = 7344.995594 C = 7615.471996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.148 3.852 3 C -0.329 4.329 4 C 0.612 3.388 5 O -0.587 6.587 6 N -0.618 5.618 7 C 0.082 3.918 8 C -0.118 4.118 9 C -0.100 4.100 10 H 0.081 0.919 11 C -0.136 4.136 12 C 0.106 3.894 13 C 0.068 3.932 14 N -0.331 5.331 15 N -0.337 5.337 16 C 0.233 3.767 17 C -0.555 4.555 18 H 0.025 0.975 19 C 0.023 3.977 20 N -0.935 5.935 21 Si 0.951 3.049 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.235 1.235 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.229 0.771 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.789 19.836 -9.568 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.012 3.988 3 C -0.344 4.344 4 C 0.404 3.596 5 O -0.469 6.469 6 N -0.350 5.350 7 C -0.040 4.040 8 C -0.156 4.156 9 C -0.119 4.119 10 H 0.100 0.900 11 C -0.193 4.193 12 C -0.016 4.016 13 C -0.118 4.118 14 N -0.151 5.151 15 N -0.113 5.113 16 C 0.113 3.887 17 C -0.593 4.593 18 H 0.043 0.957 19 C -0.177 4.177 20 N -0.573 5.573 21 Si 0.772 3.228 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.158 1.158 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.245 0.755 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.766 18.518 -9.454 21.865 hybrid contribution -0.752 -0.337 0.306 0.879 sum 6.015 18.181 -9.148 21.223 Atomic orbital electron populations 1.20588 0.85604 1.04560 1.03846 1.21954 0.96017 0.86598 0.94189 1.19920 0.93517 0.92914 1.28087 1.16865 0.84285 0.83484 0.75005 1.90666 1.17585 1.84552 1.54108 1.48203 1.07333 1.06237 1.73269 1.22624 0.78773 1.00180 1.02449 1.22770 0.98001 0.91313 1.03475 1.22391 0.93044 0.96059 1.00401 0.90016 1.21667 1.02819 0.93098 1.01732 1.22496 0.99120 0.78737 1.01207 1.25085 0.98039 0.91617 0.97102 1.77097 0.98020 1.14331 1.25619 1.48804 1.03501 1.07327 1.51706 1.19933 0.96870 0.74418 0.97463 1.21179 1.48310 0.98854 0.90918 0.95690 1.25833 0.93548 0.99164 0.99164 1.70029 1.46601 1.18910 1.21777 0.85674 0.79206 0.78809 0.79126 1.18677 1.19929 1.15774 0.90417 0.87991 0.89878 0.90785 0.89900 0.87860 0.88878 0.91818 0.92336 0.90683 0.90829 0.92244 0.75506 0.90923 0.92489 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.26 9.57 71.23 0.68 -2.58 16 2 C 0.15 6.20 7.01 42.14 0.30 6.49 16 3 C -0.33 -12.46 6.09 -20.15 -0.12 -12.58 16 4 C 0.61 21.57 7.85 86.66 0.68 22.25 16 5 O -0.59 -23.80 15.09 -4.04 -0.06 -23.86 16 6 N -0.62 -16.05 3.32 -815.21 -2.71 -18.76 16 7 C 0.08 1.46 4.99 86.73 0.43 1.89 16 8 C -0.12 -1.29 6.41 31.78 0.20 -1.09 16 9 C -0.10 -1.32 3.65 -9.32 -0.03 -1.36 16 10 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 11 C -0.14 -1.22 9.31 71.98 0.67 -0.55 16 12 C 0.11 2.19 6.38 86.93 0.55 2.75 16 13 C 0.07 2.36 10.44 85.65 0.89 3.26 16 14 N -0.33 -14.26 12.50 -56.27 -0.70 -14.97 16 15 N -0.34 -15.32 3.56 -336.70 -1.20 -16.52 16 16 C 0.23 10.96 5.04 85.63 0.43 11.39 16 17 C -0.55 -31.72 9.94 25.60 0.25 -31.46 16 18 H 0.02 1.66 8.06 -2.91 -0.02 1.63 16 19 C 0.02 1.29 5.47 84.65 0.46 1.76 16 20 N -0.94 -56.84 13.96 21.45 0.30 -56.54 16 21 Si 0.95 40.56 27.47 68.60 1.88 42.45 16 22 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.23 -8.85 6.54 99.48 0.65 -8.20 16 25 H 0.08 2.98 8.14 -2.39 -0.02 2.97 16 26 H 0.10 3.60 6.50 -2.39 -0.02 3.58 16 27 H 0.08 2.80 7.05 -2.38 -0.02 2.78 16 28 H 0.07 1.34 6.83 -2.39 -0.02 1.33 16 29 H 0.08 1.34 6.99 -2.39 -0.02 1.33 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.78 8.04 -2.39 -0.02 0.76 16 32 H 0.06 0.53 8.07 -2.39 -0.02 0.51 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.07 1.40 7.99 -2.39 -0.02 1.38 16 36 H 0.06 1.43 8.04 -2.39 -0.02 1.41 16 37 H 0.23 5.56 4.47 -2.91 -0.01 5.55 16 38 H 0.07 3.09 6.07 -2.39 -0.01 3.08 16 39 H 0.06 2.59 7.57 -2.39 -0.02 2.57 16 40 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -74.61 323.50 3.90 -70.71 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.99 Total: 17.31 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 5.40 Total: 0.17 kcal Atomic # 7 Polarization: -102.48 SS G_CDS: -4.31 Total: -106.79 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.06 Total: -23.86 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.88 Total: 42.45 kcal Total: -74.61 3.90 -70.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896047752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.906 kcal (2) G-P(sol) polarization free energy of solvation -74.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds