Wall clock time and date at job start Mon Mar 30 2020 02:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 120.00102 * 2 1 4 4 C 1.52997 * 109.47061 * 124.99551 * 3 2 1 5 5 H 1.08998 * 109.47526 * 304.99891 * 4 3 2 6 6 C 1.53003 * 109.46818 * 184.99809 * 4 3 2 7 7 N 1.46500 * 109.47441 * 65.00218 * 4 3 2 8 8 C 1.34770 * 120.00063 * 204.99716 * 7 4 3 9 9 O 1.21603 * 120.00516 * 359.97438 * 8 7 4 10 10 C 1.47431 * 119.99929 * 179.97438 * 8 7 4 11 11 C 1.41293 * 126.41437 * 0.04241 * 10 8 7 12 12 N 1.30448 * 108.02361 * 179.70632 * 11 10 8 13 13 N 1.39944 * 108.89724 * 0.40720 * 12 11 10 14 14 C 1.46491 * 125.75406 * 179.85047 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.68786 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.34263 * 108.48668 * 359.58371 * 13 12 11 24 24 C 1.50701 * 126.28871 * 180.26134 * 23 13 12 25 25 H 1.08008 * 120.00121 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00266 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00035 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46897 * 4.99762 * 3 2 1 29 29 H 1.09004 * 109.46799 * 244.99702 * 3 2 1 30 30 H 1.09003 * 109.47157 * 59.99862 * 6 4 3 31 31 H 1.08999 * 109.47181 * 180.02562 * 6 4 3 32 32 H 1.09001 * 109.47394 * 299.99860 * 6 4 3 33 33 H 0.97010 * 119.99367 * 24.99590 * 7 4 3 34 34 H 1.07998 * 125.98947 * 359.93069 * 11 10 8 35 35 H 1.09004 * 109.47166 * 149.69052 * 14 13 12 36 36 H 1.08994 * 109.47507 * 29.68759 * 14 13 12 37 37 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 38 38 H 1.09003 * 109.46762 * 89.99560 * 24 23 13 39 39 H 1.08991 * 109.47344 * 210.00318 * 24 23 13 40 40 H 1.08999 * 109.47223 * 330.00739 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 1 2.4882 1.1470 2.1061 6 6 3.7091 2.7046 1.2552 7 7 4.0546 0.2969 1.0003 8 6 4.6910 -0.2169 2.0714 9 8 4.4194 0.1798 3.1883 10 6 5.7168 -1.2601 1.8889 11 6 6.1376 -1.8168 0.6604 12 7 7.0622 -2.7015 0.9138 13 7 7.2675 -2.7590 2.2969 14 6 8.2218 -3.6318 2.9849 15 6 7.5497 -4.9347 3.3338 16 1 6.5152 -5.0966 3.0691 17 6 8.2573 -5.9226 3.9855 18 7 9.5170 -5.7256 4.3075 19 14 7.4263 -7.5405 4.4111 20 1 6.0172 -7.5114 3.9434 21 1 8.1454 -8.6564 3.7454 22 1 7.4560 -7.7404 5.8823 23 6 6.4465 -1.8752 2.8863 24 6 6.3413 -1.6041 4.3650 25 1 -0.5401 -0.9354 0.0004 26 1 -0.5400 0.9352 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1316 0.0895 29 1 2.6213 1.4025 -0.9314 30 1 2.9504 3.4756 1.3901 31 1 4.4015 2.7245 2.0968 32 1 4.2559 2.8908 0.3308 33 1 4.2715 -0.0193 0.1093 34 1 5.7623 -1.5533 -0.3174 35 1 8.5668 -3.1452 3.8973 36 1 9.0730 -3.8255 2.3323 37 1 10.0147 -6.4205 4.7663 38 1 7.0388 -0.8129 4.6399 39 1 5.3250 -1.2925 4.6059 40 1 6.5841 -2.5110 4.9188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896413104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:27 Heat of formation + Delta-G solvation = 34.192722 kcal Electronic energy + Delta-G solvation = -21111.672066 eV Core-core repulsion = 17927.829183 eV Total energy + Delta-G solvation = -3183.842883 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76801 -39.09372 -36.53157 -33.94558 -33.59591 -32.11411 -31.34175 -30.53719 -27.28293 -26.83102 -26.56854 -23.56039 -22.45732 -21.17181 -19.99677 -19.81245 -18.93110 -17.14313 -16.75796 -16.02380 -15.50184 -14.97486 -14.87160 -14.47820 -14.24108 -13.99017 -13.51934 -13.26565 -13.20064 -12.67153 -12.53177 -12.47234 -12.25146 -12.03990 -11.78565 -11.71276 -11.46076 -11.20121 -11.09673 -11.08145 -10.91514 -10.36864 -10.15297 -9.90910 -9.53370 -9.34243 -8.90232 -8.71745 -8.56724 -7.89208 -6.33812 -4.41621 2.10604 2.22216 2.81597 3.16991 3.20150 3.25201 3.32305 3.61071 3.95762 4.24462 4.58830 4.78156 4.91335 5.00381 5.14298 5.17122 5.28918 5.32626 5.41449 5.56194 5.59794 5.65518 5.77419 5.78792 5.91136 6.04495 6.11397 6.16222 6.46244 6.49366 6.55757 6.62170 6.73026 6.80394 6.90690 7.17934 7.56790 7.77336 7.78538 7.82782 8.39619 8.64043 8.67898 9.25461 10.74387 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024633 B = 0.003785 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.393049 B = 7395.274124 C = 7799.935776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C -0.101 4.101 4 C 0.149 3.851 5 H 0.088 0.912 6 C -0.163 4.163 7 N -0.729 5.729 8 C 0.604 3.396 9 O -0.557 6.557 10 C -0.333 4.333 11 C 0.057 3.943 12 N -0.296 5.296 13 N -0.314 5.314 14 C 0.251 3.749 15 C -0.540 4.540 16 H 0.066 0.934 17 C 0.067 3.933 18 N -0.889 5.889 19 Si 0.908 3.092 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.279 1.279 23 C 0.165 3.835 24 C -0.097 4.097 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.396 0.604 34 H 0.174 0.826 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.269 0.731 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.200 13.474 -7.291 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.168 4.168 3 C -0.139 4.139 4 C 0.044 3.956 5 H 0.106 0.894 6 C -0.222 4.222 7 N -0.382 5.382 8 C 0.395 3.605 9 O -0.436 6.436 10 C -0.348 4.348 11 C -0.130 4.130 12 N -0.116 5.116 13 N -0.091 5.091 14 C 0.133 3.867 15 C -0.578 4.578 16 H 0.084 0.916 17 C -0.137 4.137 18 N -0.527 5.527 19 Si 0.735 3.265 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.205 1.205 23 C 0.028 3.972 24 C -0.156 4.156 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.129 0.871 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.230 0.770 34 H 0.191 0.809 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.285 12.695 -6.852 18.316 hybrid contribution -0.729 -0.610 -0.031 0.951 sum -12.014 12.085 -6.882 18.378 Atomic orbital electron populations 1.23830 0.95948 1.01735 1.01905 1.22963 0.96030 0.98641 0.99139 1.21094 0.98134 0.96111 0.98549 1.20810 0.88353 0.87474 0.98913 0.89417 1.22197 1.01230 0.96221 1.02537 1.45808 1.41197 1.41616 1.09539 1.17303 0.79519 0.79883 0.83809 1.90682 1.66384 1.62328 1.24188 1.19711 1.10798 1.11125 0.93181 1.23707 0.96149 0.95395 0.97781 1.77130 1.19864 1.21106 0.93538 1.49364 1.28711 1.27435 1.03619 1.19848 0.86717 0.88075 0.92012 1.21303 0.98641 0.98735 1.39153 0.91595 1.24932 0.94816 0.99007 0.94940 1.69926 1.08343 1.34701 1.39707 0.86270 0.79675 0.82372 0.78215 1.19524 1.20566 1.20527 1.21480 0.90172 0.89473 0.96096 1.20608 1.04558 1.02750 0.87637 0.88577 0.88733 0.87084 0.90159 0.90433 0.92018 0.91738 0.92563 0.76971 0.80853 0.92576 0.92520 0.92165 0.90561 0.88618 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 14.32 29.02 0.42 -1.24 16 2 C -0.15 -1.35 9.25 -36.02 -0.33 -1.68 16 3 C -0.10 -0.79 5.20 -27.88 -0.15 -0.94 16 4 C 0.15 1.55 2.56 -67.93 -0.17 1.38 16 5 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 6 C -0.16 -1.56 9.48 37.16 0.35 -1.21 16 7 N -0.73 -8.77 4.76 -54.88 -0.26 -9.03 16 8 C 0.60 9.96 7.78 -12.52 -0.10 9.86 16 9 O -0.56 -10.57 14.50 5.27 0.08 -10.49 16 10 C -0.33 -6.09 6.13 -105.06 -0.64 -6.73 16 11 C 0.06 0.99 11.50 -16.98 -0.20 0.79 16 12 N -0.30 -6.39 12.50 30.86 0.39 -6.01 16 13 N -0.31 -7.15 3.56 -57.78 -0.21 -7.35 16 14 C 0.25 6.27 5.78 -5.20 -0.03 6.24 16 15 C -0.54 -14.59 9.39 -34.44 -0.32 -14.91 16 16 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 17 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -24.62 13.29 55.43 0.74 -23.88 16 19 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 C 0.16 3.39 7.01 -81.60 -0.57 2.82 16 24 C -0.10 -1.78 9.34 36.01 0.34 -1.45 16 25 H 0.10 0.77 8.06 -52.48 -0.42 0.35 16 26 H 0.09 0.68 7.84 -52.49 -0.41 0.26 16 27 H 0.11 1.09 8.03 -52.49 -0.42 0.67 16 28 H 0.08 0.53 7.79 -51.93 -0.40 0.13 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.40 3.87 7.56 -40.82 -0.31 3.56 16 34 H 0.17 2.15 7.50 -52.49 -0.39 1.75 16 35 H 0.06 1.39 7.62 -51.93 -0.40 1.00 16 36 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.10 1.73 6.50 -51.93 -0.34 1.39 16 40 H 0.08 1.56 7.70 -51.93 -0.40 1.16 16 LS Contribution 343.83 15.07 5.18 5.18 Total: -1.00 -30.69 343.83 -6.59 -37.28 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.97 Total: 3.86 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -1.51 Total: -5.37 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.65 Total: -46.28 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.69 -6.59 -37.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896413104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.468 kcal (2) G-P(sol) polarization free energy of solvation -30.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds