Wall clock time and date at job start Mon Mar 30 2020 02:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 120.00102 * 2 1 4 4 C 1.52997 * 109.47061 * 124.99551 * 3 2 1 5 5 H 1.08998 * 109.47526 * 304.99891 * 4 3 2 6 6 C 1.53003 * 109.46818 * 184.99809 * 4 3 2 7 7 N 1.46500 * 109.47441 * 65.00218 * 4 3 2 8 8 C 1.34770 * 120.00063 * 204.99716 * 7 4 3 9 9 O 1.21603 * 120.00516 * 359.97438 * 8 7 4 10 10 C 1.47431 * 119.99929 * 179.97438 * 8 7 4 11 11 C 1.41293 * 126.41437 * 0.04241 * 10 8 7 12 12 N 1.30448 * 108.02361 * 179.70632 * 11 10 8 13 13 N 1.39944 * 108.89724 * 0.40720 * 12 11 10 14 14 C 1.46491 * 125.75406 * 179.85047 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.68786 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.34263 * 108.48668 * 359.58371 * 13 12 11 24 24 C 1.50701 * 126.28871 * 180.26134 * 23 13 12 25 25 H 1.08008 * 120.00121 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00266 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00035 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46897 * 4.99762 * 3 2 1 29 29 H 1.09004 * 109.46799 * 244.99702 * 3 2 1 30 30 H 1.09003 * 109.47157 * 59.99862 * 6 4 3 31 31 H 1.08999 * 109.47181 * 180.02562 * 6 4 3 32 32 H 1.09001 * 109.47394 * 299.99860 * 6 4 3 33 33 H 0.97010 * 119.99367 * 24.99590 * 7 4 3 34 34 H 1.07998 * 125.98947 * 359.93069 * 11 10 8 35 35 H 1.09004 * 109.47166 * 149.69052 * 14 13 12 36 36 H 1.08994 * 109.47507 * 29.68759 * 14 13 12 37 37 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 38 38 H 1.09003 * 109.46762 * 89.99560 * 24 23 13 39 39 H 1.08991 * 109.47344 * 210.00318 * 24 23 13 40 40 H 1.08999 * 109.47223 * 330.00739 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 1 2.4882 1.1470 2.1061 6 6 3.7091 2.7046 1.2552 7 7 4.0546 0.2969 1.0003 8 6 4.6910 -0.2169 2.0714 9 8 4.4194 0.1798 3.1883 10 6 5.7168 -1.2601 1.8889 11 6 6.1376 -1.8168 0.6604 12 7 7.0622 -2.7015 0.9138 13 7 7.2675 -2.7590 2.2969 14 6 8.2218 -3.6318 2.9849 15 6 7.5497 -4.9347 3.3338 16 1 6.5152 -5.0966 3.0691 17 6 8.2573 -5.9226 3.9855 18 7 9.5170 -5.7256 4.3075 19 14 7.4263 -7.5405 4.4111 20 1 6.0172 -7.5114 3.9434 21 1 8.1454 -8.6564 3.7454 22 1 7.4560 -7.7404 5.8823 23 6 6.4465 -1.8752 2.8863 24 6 6.3413 -1.6041 4.3650 25 1 -0.5401 -0.9354 0.0004 26 1 -0.5400 0.9352 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1316 0.0895 29 1 2.6213 1.4025 -0.9314 30 1 2.9504 3.4756 1.3901 31 1 4.4015 2.7245 2.0968 32 1 4.2559 2.8908 0.3308 33 1 4.2715 -0.0193 0.1093 34 1 5.7623 -1.5533 -0.3174 35 1 8.5668 -3.1452 3.8973 36 1 9.0730 -3.8255 2.3323 37 1 10.0147 -6.4205 4.7663 38 1 7.0388 -0.8129 4.6399 39 1 5.3250 -1.2925 4.6059 40 1 6.5841 -2.5110 4.9188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896413104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:26 Heat of formation + Delta-G solvation = 15.057619 kcal Electronic energy + Delta-G solvation = -21112.501827 eV Core-core repulsion = 17927.829183 eV Total energy + Delta-G solvation = -3184.672643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.29657 -40.30745 -37.50426 -35.82203 -34.56754 -33.79502 -32.80179 -31.71251 -29.06225 -28.13095 -27.48868 -25.41667 -23.78108 -22.24928 -21.19602 -20.69899 -20.38558 -18.87634 -18.45831 -17.04505 -16.92330 -16.38619 -16.20294 -15.90863 -15.57596 -15.26148 -14.74161 -14.56200 -14.28936 -14.09752 -13.92921 -13.66937 -13.58930 -13.41151 -13.09278 -12.98362 -12.94869 -12.72875 -12.44041 -12.33586 -12.00935 -11.83908 -11.77187 -11.70164 -10.77437 -10.72506 -10.25654 -10.22718 -9.97587 -9.41470 -8.38885 -6.55384 0.70441 1.33978 1.35713 1.38897 1.45296 1.49385 1.67456 2.31433 2.44079 2.59387 2.93150 3.75139 3.75833 3.91735 4.07370 4.16389 4.22964 4.27043 4.47539 4.54997 4.59418 4.65098 4.78723 4.79002 4.87946 4.89476 4.98027 5.07794 5.13422 5.15025 5.23146 5.39458 5.48386 5.65601 5.71745 5.74065 5.82159 5.93858 6.05296 6.54286 6.70335 6.86820 7.15938 7.44145 8.69203 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024633 B = 0.003785 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.393049 B = 7395.274124 C = 7799.935776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C -0.090 4.090 4 C 0.148 3.852 5 H 0.064 0.936 6 C -0.159 4.159 7 N -0.709 5.709 8 C 0.605 3.395 9 O -0.585 6.585 10 C -0.331 4.331 11 C 0.079 3.921 12 N -0.337 5.337 13 N -0.339 5.339 14 C 0.267 3.733 15 C -0.556 4.556 16 H 0.051 0.949 17 C 0.024 3.976 18 N -0.916 5.916 19 Si 0.972 3.028 20 H -0.273 1.273 21 H -0.272 1.272 22 H -0.268 1.268 23 C 0.143 3.857 24 C -0.089 4.089 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.410 0.590 34 H 0.227 0.773 35 H 0.049 0.951 36 H 0.032 0.968 37 H 0.274 0.726 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.011 14.428 -8.684 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.184 4.184 3 C -0.127 4.127 4 C 0.044 3.956 5 H 0.082 0.918 6 C -0.217 4.217 7 N -0.361 5.361 8 C 0.394 3.606 9 O -0.467 6.467 10 C -0.346 4.346 11 C -0.108 4.108 12 N -0.157 5.157 13 N -0.116 5.116 14 C 0.149 3.851 15 C -0.594 4.594 16 H 0.069 0.931 17 C -0.178 4.178 18 N -0.554 5.554 19 Si 0.796 3.204 20 H -0.198 1.198 21 H -0.198 1.198 22 H -0.193 1.193 23 C 0.007 3.993 24 C -0.147 4.147 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.247 0.753 34 H 0.243 0.757 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.113 13.675 -8.282 20.677 hybrid contribution -0.261 -0.794 0.332 0.900 sum -13.374 12.881 -7.950 20.198 Atomic orbital electron populations 1.24002 0.95932 1.02496 1.00890 1.23027 0.96403 0.98820 1.00110 1.21046 0.97736 0.96071 0.97896 1.20952 0.88162 0.87206 0.99315 0.91764 1.22151 1.01330 0.96142 1.02080 1.45684 1.40324 1.41063 1.09061 1.17124 0.79480 0.79650 0.84376 1.90671 1.67251 1.63177 1.25580 1.20021 1.10525 1.11055 0.92999 1.24498 0.93835 0.92937 0.99493 1.77082 1.22151 1.23420 0.93033 1.49099 1.29693 1.28496 1.04331 1.19354 0.86495 0.87991 0.91295 1.21429 0.98114 1.00082 1.39755 0.93082 1.25739 0.95355 1.02174 0.94515 1.70005 1.09444 1.35944 1.40042 0.85288 0.78369 0.78254 0.78467 1.19779 1.19773 1.19305 1.21974 0.90379 0.89500 0.97408 1.20566 1.04995 1.02512 0.86656 0.88685 0.87252 0.88284 0.88297 0.88521 0.89915 0.94567 0.91032 0.75310 0.75724 0.93274 0.95039 0.91635 0.89149 0.88370 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.83 14.32 67.79 0.97 -1.86 16 2 C -0.17 -2.58 9.25 25.65 0.24 -2.34 16 3 C -0.09 -1.10 5.20 29.85 0.16 -0.94 16 4 C 0.15 2.72 2.56 44.99 0.12 2.84 16 5 H 0.06 1.53 7.58 -2.39 -0.02 1.51 16 6 C -0.16 -2.64 9.48 71.98 0.68 -1.95 16 7 N -0.71 -15.43 4.76 -445.81 -2.12 -17.55 16 8 C 0.60 19.22 7.78 86.67 0.67 19.90 16 9 O -0.59 -22.04 14.50 -4.04 -0.06 -22.10 16 10 C -0.33 -11.83 6.13 -20.15 -0.12 -11.95 16 11 C 0.08 2.61 11.50 85.65 0.99 3.60 16 12 N -0.34 -14.55 12.50 -56.27 -0.70 -15.25 16 13 N -0.34 -15.83 3.56 -336.71 -1.20 -17.03 16 14 C 0.27 13.96 5.78 85.64 0.50 14.46 16 15 C -0.56 -30.92 9.39 25.60 0.24 -30.68 16 16 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 17 C 0.02 1.28 5.46 84.66 0.46 1.74 16 18 N -0.92 -51.51 13.29 21.45 0.28 -51.23 16 19 Si 0.97 42.93 29.54 68.60 2.03 44.96 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 C 0.14 5.96 7.01 42.14 0.30 6.26 16 24 C -0.09 -3.35 9.34 71.24 0.67 -2.69 16 25 H 0.09 1.36 8.06 -2.91 -0.02 1.34 16 26 H 0.11 1.23 7.84 -2.91 -0.02 1.21 16 27 H 0.10 1.76 8.03 -2.91 -0.02 1.74 16 28 H 0.10 0.90 7.79 -2.39 -0.02 0.88 16 29 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.41 6.59 7.56 -92.70 -0.70 5.89 16 34 H 0.23 4.69 7.50 -2.91 -0.02 4.67 16 35 H 0.05 2.57 7.62 -2.38 -0.02 2.56 16 36 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 38 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.10 3.61 6.50 -2.39 -0.02 3.60 16 40 H 0.07 2.74 7.70 -2.39 -0.02 2.72 16 Total: -1.00 -68.12 343.83 4.41 -63.71 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.33 Total: 18.12 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 5.86 Total: -3.62 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -3.74 Total: -101.06 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.06 Total: -22.10 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -68.12 4.41 -63.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896413104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.764 kcal (2) G-P(sol) polarization free energy of solvation -68.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds