Wall clock time and date at job start Mon Mar 30 2020 02:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 119.99782 * 2 1 4 4 C 1.53003 * 109.47224 * 125.00095 * 3 2 1 5 5 H 1.09005 * 109.47084 * 54.99277 * 4 3 2 6 6 C 1.53000 * 109.47388 * 174.99924 * 4 3 2 7 7 N 1.46507 * 109.46653 * 294.99851 * 4 3 2 8 8 C 1.34774 * 119.99842 * 155.00295 * 7 4 3 9 9 O 1.21613 * 120.00154 * 359.97438 * 8 7 4 10 10 C 1.47432 * 120.00028 * 179.97438 * 8 7 4 11 11 C 1.41283 * 126.41517 * 359.97438 * 10 8 7 12 12 N 1.30450 * 108.02431 * 179.71949 * 11 10 8 13 13 N 1.39939 * 108.89458 * 0.43924 * 12 11 10 14 14 C 1.46491 * 125.75158 * 179.81322 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.69119 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.34263 * 108.48917 * 359.54930 * 13 12 11 24 24 C 1.50703 * 126.28631 * 180.26204 * 23 13 12 25 25 H 1.08007 * 120.00035 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00236 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.99921 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47535 * 4.99921 * 3 2 1 29 29 H 1.09006 * 109.47042 * 244.99543 * 3 2 1 30 30 H 1.08996 * 109.46897 * 179.97438 * 6 4 3 31 31 H 1.08999 * 109.46862 * 299.99859 * 6 4 3 32 32 H 1.08998 * 109.46945 * 59.99389 * 6 4 3 33 33 H 0.96999 * 120.00352 * 334.99755 * 7 4 3 34 34 H 1.08004 * 125.98627 * 359.97438 * 11 10 8 35 35 H 1.09004 * 109.47166 * 149.69385 * 14 13 12 36 36 H 1.08994 * 109.47507 * 29.69092 * 14 13 12 37 37 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.46848 * 90.00184 * 24 23 13 39 39 H 1.09001 * 109.46567 * 209.99823 * 24 23 13 40 40 H 1.08997 * 109.47219 * 329.99861 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6826 0.4573 1.1404 6 6 3.8875 2.6017 1.1110 7 7 2.2784 1.3224 2.4362 8 6 2.8472 0.8477 3.5620 9 8 3.9883 0.4278 3.5365 10 6 2.0861 0.8373 4.8246 11 6 0.7603 1.2898 5.0085 12 7 0.4424 1.1096 6.2607 13 7 1.5368 0.5510 6.9304 14 6 1.5830 0.2018 8.3523 15 6 2.0847 1.3823 9.1434 16 1 2.3430 2.3009 8.6376 17 6 2.2082 1.2916 10.5137 18 7 2.6409 2.3236 11.2047 19 14 1.7610 -0.2971 11.3886 20 1 2.9591 -1.1705 11.4719 21 1 1.2772 0.0115 12.7584 22 1 0.6912 -0.9951 10.6313 23 6 2.5354 0.3837 6.0485 24 6 3.8965 -0.1932 6.3413 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 4.5793 2.6218 1.9531 31 1 4.4504 2.6097 0.1776 32 1 3.2399 3.4774 1.1522 33 1 1.3682 1.6570 2.4566 34 1 0.1207 1.7074 4.2450 35 1 2.2547 -0.6445 8.4970 36 1 0.5830 -0.0656 8.6935 37 1 2.7281 2.2596 12.1686 38 1 3.8732 -1.2728 6.1923 39 1 4.6312 0.2505 5.6694 40 1 4.1694 0.0253 7.3736 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896413105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:29 Heat of formation + Delta-G solvation = 40.291262 kcal Electronic energy + Delta-G solvation = -21202.964259 eV Core-core repulsion = 18019.385828 eV Total energy + Delta-G solvation = -3183.578430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84239 -39.11932 -36.55640 -33.95634 -33.55246 -32.19931 -31.42106 -30.71763 -27.75972 -26.81742 -26.66856 -23.31325 -22.42208 -21.09541 -20.23358 -19.71058 -18.93522 -17.21701 -17.09420 -16.27754 -15.27643 -15.01772 -14.86879 -14.47356 -14.15078 -13.98237 -13.72982 -13.42071 -13.18284 -12.67441 -12.62452 -12.55476 -12.32009 -12.20869 -12.07190 -11.88109 -11.56296 -11.22501 -11.12691 -10.98598 -10.84413 -10.39542 -10.20182 -9.79330 -9.57949 -9.35370 -8.92175 -8.85060 -8.62845 -7.93913 -6.32884 -4.37634 2.09488 2.16313 2.75583 3.06932 3.12685 3.18620 3.23293 3.56141 3.92484 4.15855 4.53126 4.76486 4.91648 4.96507 5.10405 5.18509 5.21703 5.31643 5.37778 5.52574 5.58903 5.62965 5.70599 5.75769 5.86857 6.01535 6.04429 6.18130 6.27761 6.42878 6.46084 6.51775 6.55180 6.61871 6.73188 7.04732 7.18830 7.58499 7.79992 8.20340 8.30163 8.65094 8.70744 9.21063 10.79339 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030938 B = 0.003783 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.825835 B = 7400.510795 C = 7707.975910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C -0.102 4.102 4 C 0.149 3.851 5 H 0.088 0.912 6 C -0.164 4.164 7 N -0.727 5.727 8 C 0.605 3.395 9 O -0.557 6.557 10 C -0.329 4.329 11 C 0.061 3.939 12 N -0.293 5.293 13 N -0.314 5.314 14 C 0.225 3.775 15 C -0.546 4.546 16 H 0.082 0.918 17 C 0.081 3.919 18 N -0.883 5.883 19 Si 0.873 3.127 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 C 0.167 3.833 24 C -0.099 4.099 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.396 0.604 34 H 0.176 0.824 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.270 0.730 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.570 -3.872 -20.142 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.167 4.167 3 C -0.140 4.140 4 C 0.044 3.956 5 H 0.106 0.894 6 C -0.223 4.223 7 N -0.379 5.379 8 C 0.395 3.605 9 O -0.436 6.436 10 C -0.344 4.344 11 C -0.126 4.126 12 N -0.113 5.113 13 N -0.091 5.091 14 C 0.106 3.894 15 C -0.584 4.584 16 H 0.100 0.900 17 C -0.124 4.124 18 N -0.519 5.519 19 Si 0.698 3.302 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.188 1.188 23 C 0.031 3.969 24 C -0.157 4.157 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.230 0.770 34 H 0.193 0.807 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.655 -4.001 -18.892 19.382 hybrid contribution -0.216 -0.508 0.064 0.555 sum -1.870 -4.509 -18.828 19.451 Atomic orbital electron populations 1.23829 0.95891 1.01829 1.01642 1.22907 0.96051 0.98347 0.99371 1.21101 0.98544 0.95927 0.98390 1.20801 0.92792 0.99279 0.82685 0.89418 1.22202 1.00229 0.97445 1.02410 1.45773 1.17661 1.66149 1.08295 1.17269 0.85276 0.75648 0.82295 1.90685 1.18317 1.48842 1.85774 1.19709 0.97507 1.22937 0.94232 1.23727 0.94604 0.99707 0.94592 1.77137 1.10099 1.18076 1.05992 1.48891 1.07785 1.42718 1.09682 1.20140 0.99506 0.97763 0.72004 1.21107 1.46163 0.99025 0.92101 0.90021 1.24797 0.94045 0.96668 0.96852 1.69864 1.44539 1.29905 1.07613 0.86902 0.79637 0.83620 0.80006 1.19479 1.20368 1.18785 1.21471 0.92057 0.94815 0.88565 1.20639 0.90460 1.00521 1.04124 0.88618 0.88623 0.87423 0.90934 0.89579 0.91675 0.91961 0.92544 0.76985 0.80681 0.93441 0.92739 0.91971 0.90557 0.88365 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.53 14.32 29.01 0.42 -1.11 16 2 C -0.15 -1.23 9.25 -36.02 -0.33 -1.56 16 3 C -0.10 -0.76 5.20 -27.88 -0.15 -0.91 16 4 C 0.15 1.52 2.56 -67.93 -0.17 1.34 16 5 H 0.09 1.04 7.58 -51.93 -0.39 0.64 16 6 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 7 N -0.73 -8.78 4.78 -54.87 -0.26 -9.04 16 8 C 0.60 9.91 7.78 -12.52 -0.10 9.82 16 9 O -0.56 -10.45 14.50 5.27 0.08 -10.37 16 10 C -0.33 -5.97 6.13 -105.07 -0.64 -6.61 16 11 C 0.06 1.05 11.50 -16.98 -0.20 0.86 16 12 N -0.29 -6.23 12.50 30.86 0.39 -5.85 16 13 N -0.31 -6.98 3.56 -57.78 -0.21 -7.19 16 14 C 0.22 5.26 4.85 -5.20 -0.03 5.23 16 15 C -0.55 -15.00 9.94 -34.44 -0.34 -15.34 16 16 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 17 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 18 N -0.88 -25.89 13.96 55.43 0.77 -25.11 16 19 Si 0.87 19.79 27.47 -169.99 -4.67 15.12 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 22 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 23 C 0.17 3.38 7.01 -81.60 -0.57 2.81 16 24 C -0.10 -1.77 9.34 36.01 0.34 -1.44 16 25 H 0.10 0.66 7.84 -52.48 -0.41 0.25 16 26 H 0.10 0.72 8.06 -52.49 -0.42 0.29 16 27 H 0.11 0.92 8.06 -52.49 -0.42 0.50 16 28 H 0.07 0.49 7.79 -51.93 -0.40 0.08 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.40 4.00 7.56 -40.82 -0.31 3.69 16 34 H 0.18 2.18 7.50 -52.48 -0.39 1.78 16 35 H 0.05 1.02 7.05 -51.93 -0.37 0.66 16 36 H 0.05 1.28 7.19 -51.93 -0.37 0.91 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.10 1.75 6.50 -51.93 -0.34 1.42 16 40 H 0.08 1.54 7.70 -51.93 -0.40 1.14 16 LS Contribution 340.26 15.07 5.13 5.13 Total: -1.00 -31.96 340.26 -6.23 -38.20 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.94 Total: 5.15 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -1.52 Total: -6.03 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.69 Total: -47.19 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.67 Total: 15.12 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.96 -6.23 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896413105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.486 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds