Wall clock time and date at job start Mon Mar 30 2020 02:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 119.99782 * 2 1 4 4 C 1.53003 * 109.47224 * 125.00095 * 3 2 1 5 5 H 1.09005 * 109.47084 * 54.99277 * 4 3 2 6 6 C 1.53000 * 109.47388 * 174.99924 * 4 3 2 7 7 N 1.46507 * 109.46653 * 294.99851 * 4 3 2 8 8 C 1.34774 * 119.99842 * 155.00295 * 7 4 3 9 9 O 1.21613 * 120.00154 * 359.97438 * 8 7 4 10 10 C 1.47432 * 120.00028 * 179.97438 * 8 7 4 11 11 C 1.41283 * 126.41517 * 359.97438 * 10 8 7 12 12 N 1.30450 * 108.02431 * 179.71949 * 11 10 8 13 13 N 1.39939 * 108.89458 * 0.43924 * 12 11 10 14 14 C 1.46491 * 125.75158 * 179.81322 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.69119 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.34263 * 108.48917 * 359.54930 * 13 12 11 24 24 C 1.50703 * 126.28631 * 180.26204 * 23 13 12 25 25 H 1.08007 * 120.00035 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00236 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.99921 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47535 * 4.99921 * 3 2 1 29 29 H 1.09006 * 109.47042 * 244.99543 * 3 2 1 30 30 H 1.08996 * 109.46897 * 179.97438 * 6 4 3 31 31 H 1.08999 * 109.46862 * 299.99859 * 6 4 3 32 32 H 1.08998 * 109.46945 * 59.99389 * 6 4 3 33 33 H 0.96999 * 120.00352 * 334.99755 * 7 4 3 34 34 H 1.08004 * 125.98627 * 359.97438 * 11 10 8 35 35 H 1.09004 * 109.47166 * 149.69385 * 14 13 12 36 36 H 1.08994 * 109.47507 * 29.69092 * 14 13 12 37 37 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.46848 * 90.00184 * 24 23 13 39 39 H 1.09001 * 109.46567 * 209.99823 * 24 23 13 40 40 H 1.08997 * 109.47219 * 329.99861 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6826 0.4573 1.1404 6 6 3.8875 2.6017 1.1110 7 7 2.2784 1.3224 2.4362 8 6 2.8472 0.8477 3.5620 9 8 3.9883 0.4278 3.5365 10 6 2.0861 0.8373 4.8246 11 6 0.7603 1.2898 5.0085 12 7 0.4424 1.1096 6.2607 13 7 1.5368 0.5510 6.9304 14 6 1.5830 0.2018 8.3523 15 6 2.0847 1.3823 9.1434 16 1 2.3430 2.3009 8.6376 17 6 2.2082 1.2916 10.5137 18 7 2.6409 2.3236 11.2047 19 14 1.7610 -0.2971 11.3886 20 1 2.9591 -1.1705 11.4719 21 1 1.2772 0.0115 12.7584 22 1 0.6912 -0.9951 10.6313 23 6 2.5354 0.3837 6.0485 24 6 3.8965 -0.1932 6.3413 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 4.5793 2.6218 1.9531 31 1 4.4504 2.6097 0.1776 32 1 3.2399 3.4774 1.1522 33 1 1.3682 1.6570 2.4566 34 1 0.1207 1.7074 4.2450 35 1 2.2547 -0.6445 8.4970 36 1 0.5830 -0.0656 8.6935 37 1 2.7281 2.2596 12.1686 38 1 3.8732 -1.2728 6.1923 39 1 4.6312 0.2505 5.6694 40 1 4.1694 0.0253 7.3736 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896413105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:29 Heat of formation + Delta-G solvation = 18.884424 kcal Electronic energy + Delta-G solvation = -21203.892529 eV Core-core repulsion = 18019.385828 eV Total energy + Delta-G solvation = -3184.506700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.33083 -40.31382 -37.50961 -35.78024 -34.51470 -33.92210 -32.87811 -31.85124 -29.50908 -28.15619 -27.46257 -25.06847 -23.79139 -22.19189 -21.20490 -20.75556 -20.34163 -19.28707 -18.46374 -17.22685 -16.82522 -16.47615 -16.07734 -15.77914 -15.41088 -15.33423 -14.82435 -14.66597 -14.42597 -14.13240 -14.06913 -13.77589 -13.68704 -13.39235 -13.17275 -13.07077 -12.98853 -12.58048 -12.57133 -12.15706 -11.85802 -11.83176 -11.72511 -11.69241 -10.92565 -10.76173 -10.25893 -10.19439 -9.99284 -9.42193 -8.43825 -6.56056 0.67343 1.32525 1.33695 1.35126 1.45151 1.49054 1.63416 2.24197 2.42819 2.58120 2.88491 3.71500 3.72981 3.87423 4.07464 4.12911 4.21609 4.33073 4.46385 4.47427 4.53501 4.59112 4.65086 4.74422 4.77840 4.85585 4.99297 5.07218 5.10770 5.15135 5.17344 5.22214 5.39088 5.61239 5.69716 5.83493 5.84609 5.96274 6.20848 6.47038 6.68212 6.81910 7.07997 7.43081 8.72700 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030938 B = 0.003783 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.825835 B = 7400.510795 C = 7707.975910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 C -0.091 4.091 4 C 0.147 3.853 5 H 0.070 0.930 6 C -0.161 4.161 7 N -0.708 5.708 8 C 0.604 3.396 9 O -0.585 6.585 10 C -0.330 4.330 11 C 0.081 3.919 12 N -0.334 5.334 13 N -0.339 5.339 14 C 0.234 3.766 15 C -0.554 4.554 16 H 0.025 0.975 17 C 0.023 3.977 18 N -0.935 5.935 19 Si 0.950 3.050 20 H -0.252 1.252 21 H -0.277 1.277 22 H -0.243 1.243 23 C 0.145 3.855 24 C -0.092 4.092 25 H 0.109 0.891 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.033 0.967 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.409 0.591 34 H 0.225 0.775 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.275 0.725 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.749 -5.072 -22.023 22.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.181 4.181 3 C -0.128 4.128 4 C 0.043 3.957 5 H 0.088 0.912 6 C -0.219 4.219 7 N -0.360 5.360 8 C 0.393 3.607 9 O -0.466 6.466 10 C -0.345 4.345 11 C -0.107 4.107 12 N -0.153 5.153 13 N -0.116 5.116 14 C 0.114 3.886 15 C -0.592 4.592 16 H 0.044 0.956 17 C -0.177 4.177 18 N -0.573 5.573 19 Si 0.771 3.229 20 H -0.176 1.176 21 H -0.202 1.202 22 H -0.166 1.166 23 C 0.010 3.990 24 C -0.150 4.150 25 H 0.127 0.873 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.245 0.755 34 H 0.241 0.759 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.853 -5.188 -20.834 21.659 hybrid contribution 0.169 -0.012 0.468 0.498 sum -2.684 -5.201 -20.366 21.190 Atomic orbital electron populations 1.23983 0.95798 1.02533 1.00658 1.22959 0.96360 0.98465 1.00292 1.21043 0.98195 0.96013 0.97580 1.20953 0.93285 0.98796 0.82633 0.91224 1.22167 0.99928 0.97552 1.02263 1.45672 1.18171 1.64364 1.07763 1.17127 0.84814 0.75987 0.82776 1.90673 1.19440 1.50324 1.86205 1.20038 0.98020 1.21975 0.94483 1.24476 0.94574 0.97427 0.94177 1.77079 1.10758 1.19768 1.07696 1.48754 1.08822 1.44590 1.09411 1.19881 0.99566 0.96398 0.72738 1.21197 1.46552 0.98628 0.92859 0.95624 1.25828 0.93447 1.00918 0.97506 1.70024 1.46158 1.32865 1.08233 0.85692 0.80444 0.78488 0.78322 1.17620 1.20198 1.16606 1.21992 0.92477 0.95258 0.89250 1.20619 0.89450 1.01852 1.03120 0.87286 0.88657 0.88330 0.89340 0.87740 0.94801 0.89715 0.91395 0.75509 0.75881 0.91233 0.92566 0.91620 0.88294 0.88654 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 14.32 67.78 0.97 -1.51 16 2 C -0.16 -2.29 9.25 25.65 0.24 -2.06 16 3 C -0.09 -1.07 5.20 29.85 0.16 -0.91 16 4 C 0.15 2.70 2.56 44.99 0.12 2.81 16 5 H 0.07 1.57 7.58 -2.38 -0.02 1.55 16 6 C -0.16 -2.83 9.48 71.98 0.68 -2.15 16 7 N -0.71 -15.60 4.78 -445.76 -2.13 -17.73 16 8 C 0.60 19.17 7.78 86.67 0.67 19.85 16 9 O -0.58 -21.83 14.50 -4.07 -0.06 -21.89 16 10 C -0.33 -11.70 6.13 -20.15 -0.12 -11.83 16 11 C 0.08 2.64 11.50 85.65 0.99 3.63 16 12 N -0.33 -14.04 12.50 -56.28 -0.70 -14.74 16 13 N -0.34 -15.15 3.56 -336.71 -1.20 -16.35 16 14 C 0.23 10.97 4.85 85.64 0.42 11.39 16 15 C -0.55 -31.55 9.94 25.60 0.25 -31.29 16 16 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 17 C 0.02 1.30 5.47 84.66 0.46 1.76 16 18 N -0.93 -56.64 13.96 21.45 0.30 -56.34 16 19 Si 0.95 40.50 27.47 68.60 1.88 42.38 16 20 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 23 C 0.15 5.89 7.01 42.14 0.30 6.19 16 24 C -0.09 -3.32 9.34 71.24 0.67 -2.66 16 25 H 0.11 1.10 7.84 -2.91 -0.02 1.08 16 26 H 0.10 1.22 8.06 -2.91 -0.02 1.20 16 27 H 0.10 1.56 8.06 -2.91 -0.02 1.53 16 28 H 0.09 0.80 7.79 -2.39 -0.02 0.78 16 29 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.41 6.91 7.56 -92.71 -0.70 6.21 16 34 H 0.22 4.72 7.50 -2.91 -0.02 4.70 16 35 H 0.07 2.92 7.05 -2.38 -0.02 2.91 16 36 H 0.06 2.60 7.19 -2.39 -0.02 2.58 16 37 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.09 3.46 6.50 -2.39 -0.02 3.45 16 40 H 0.07 2.68 7.70 -2.39 -0.02 2.66 16 Total: -1.00 -73.07 340.26 4.16 -68.92 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.28 Total: 22.54 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 5.79 Total: -6.79 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -3.74 Total: -105.16 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.06 Total: -21.89 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 1.88 Total: 42.38 kcal Total: -73.07 4.16 -68.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896413105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.800 kcal (2) G-P(sol) polarization free energy of solvation -73.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds