Wall clock time and date at job start Mon Mar 30 2020 02:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38042 * 126.29273 * 2 1 4 4 C 1.47430 * 126.41208 * 0.02562 * 3 2 1 5 5 O 1.21599 * 119.99975 * 325.67703 * 4 3 2 6 6 N 1.34783 * 119.99879 * 145.67996 * 4 3 2 7 7 C 1.47062 * 136.05784 * 5.80116 * 6 4 3 8 8 H 1.08995 * 113.47340 * 92.24366 * 7 6 4 9 9 C 1.53001 * 113.46716 * 321.85885 * 7 6 4 10 10 C 1.53496 * 87.98656 * 207.08130 * 7 6 4 11 11 C 1.47070 * 136.05555 * 185.42761 * 6 4 3 12 12 H 1.09002 * 113.46373 * 267.69551 * 11 6 4 13 13 C 1.52994 * 113.46729 * 38.13290 * 11 6 4 14 14 C 1.41287 * 107.17409 * 179.75533 * 3 2 1 15 15 N 1.30448 * 108.02527 * 0.22854 * 14 3 2 16 16 N 1.34262 * 126.29419 * 180.14541 * 2 1 3 17 17 C 1.46502 * 125.75162 * 0.02562 * 16 2 1 18 18 C 1.50701 * 109.46765 * 270.24468 * 17 16 2 19 19 H 1.07997 * 120.00179 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99519 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00443 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99599 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47262 * 60.00227 * 22 20 18 24 24 H 1.48504 * 109.46722 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46977 * 299.99677 * 22 20 18 26 26 H 1.09001 * 109.46998 * 89.99875 * 1 2 3 27 27 H 1.08997 * 109.46952 * 209.99966 * 1 2 3 28 28 H 1.09000 * 109.47283 * 330.00216 * 1 2 3 29 29 H 1.08999 * 109.46920 * 84.23065 * 9 7 6 30 30 H 1.08998 * 109.47258 * 204.22358 * 9 7 6 31 31 H 1.08997 * 109.47605 * 324.22756 * 9 7 6 32 32 H 1.09003 * 114.20720 * 87.51135 * 10 7 6 33 33 H 1.08998 * 114.21107 * 220.14890 * 10 7 6 34 34 H 1.08998 * 109.47083 * 52.60771 * 13 11 6 35 35 H 1.09008 * 109.46979 * 172.60685 * 13 11 6 36 36 H 1.08998 * 109.47486 * 292.60207 * 13 11 6 37 37 H 1.07998 * 125.99186 * 180.24863 * 14 3 2 38 38 H 1.08992 * 109.47115 * 30.24864 * 17 16 2 39 39 H 1.09000 * 109.46892 * 150.25113 * 17 16 2 40 40 H 0.97001 * 120.00291 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8857 2.5203 0.0005 5 8 0.8744 2.8424 -0.5928 6 7 2.6061 3.4501 0.6586 7 6 3.8893 3.4830 1.3762 8 1 4.7317 3.7686 0.7464 9 6 4.1634 2.2184 2.1928 10 6 3.3297 4.6417 2.2132 11 6 2.4578 4.8799 0.9694 12 1 2.9227 5.5348 0.2324 13 6 1.0200 5.2858 1.2992 14 6 3.6589 0.6499 0.0058 15 7 3.6341 -0.6544 0.0040 16 7 2.3017 -1.0821 -0.0027 17 6 1.8501 -2.4758 -0.0068 18 6 1.6890 -2.9557 1.4126 19 1 1.9013 -2.2892 2.2354 20 6 1.2705 -4.2458 1.6608 21 7 1.0124 -5.0576 0.6589 22 14 1.0701 -4.8405 3.4203 23 1 0.0653 -3.9973 4.1164 24 1 0.6136 -6.2536 3.4161 25 1 2.3726 -4.7437 4.1269 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 4.6010 1.4570 1.5473 30 1 4.8562 2.4511 3.0014 31 1 3.2282 1.8463 2.6112 32 1 2.7757 4.3273 3.0977 33 1 4.0489 5.4355 2.4149 34 1 0.6292 4.6352 2.0816 35 1 1.0045 6.3195 1.6448 36 1 0.4020 5.1920 0.4063 37 1 4.5448 1.2676 0.0110 38 1 0.8938 -2.5463 -0.5250 39 1 2.5871 -3.0950 -0.5182 40 1 0.7184 -5.9654 0.8335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897614379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:31 Heat of formation + Delta-G solvation = 71.973379 kcal Electronic energy + Delta-G solvation = -21997.433222 eV Core-core repulsion = 18815.228632 eV Total energy + Delta-G solvation = -3182.204591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.99251 -40.02769 -37.33756 -33.94280 -32.32266 -31.64680 -30.90354 -30.03737 -27.89520 -26.76364 -26.51635 -23.48251 -22.68761 -21.47709 -20.70599 -19.30770 -18.37157 -17.01278 -16.71873 -15.86513 -15.29315 -14.94819 -14.79781 -14.34729 -14.12461 -13.66579 -13.52079 -13.29941 -12.96607 -12.59052 -12.46486 -12.20452 -12.03435 -11.80816 -11.68697 -11.60515 -11.54691 -11.45276 -11.30645 -11.06237 -10.88359 -10.36871 -10.33812 -10.13460 -9.88943 -9.29339 -8.70714 -8.57739 -8.48263 -7.81637 -6.32950 -4.41180 2.28990 2.84048 2.96824 3.19142 3.23541 3.26184 3.45673 3.76124 4.23908 4.25366 4.72029 4.87115 5.00223 5.02893 5.12255 5.12803 5.20434 5.32072 5.39785 5.49764 5.63417 5.71290 5.76841 5.83001 5.89895 5.95438 6.09244 6.13620 6.13969 6.32643 6.39469 6.42328 6.62990 6.81704 6.92730 7.21175 7.56913 7.78486 7.82481 8.00568 8.41947 8.62886 8.66034 9.25639 10.75049 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024026 B = 0.004655 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.144602 B = 6013.706968 C = 6206.166276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.156 3.844 3 C -0.321 4.321 4 C 0.633 3.367 5 O -0.551 6.551 6 N -0.641 5.641 7 C 0.127 3.873 8 H 0.090 0.910 9 C -0.174 4.174 10 C -0.149 4.149 11 C 0.131 3.869 12 H 0.087 0.913 13 C -0.155 4.155 14 C 0.058 3.942 15 N -0.299 5.299 16 N -0.314 5.314 17 C 0.252 3.748 18 C -0.541 4.541 19 H 0.064 0.936 20 C 0.068 3.932 21 N -0.889 5.889 22 Si 0.907 3.093 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.179 0.821 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.000 17.485 2.629 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.019 3.981 3 C -0.337 4.337 4 C 0.426 3.574 5 O -0.429 6.429 6 N -0.378 5.378 7 C 0.024 3.976 8 H 0.108 0.892 9 C -0.232 4.232 10 C -0.187 4.187 11 C 0.027 3.973 12 H 0.105 0.895 13 C -0.212 4.212 14 C -0.128 4.128 15 N -0.119 5.119 16 N -0.091 5.091 17 C 0.135 3.865 18 C -0.579 4.579 19 H 0.082 0.918 20 C -0.136 4.136 21 N -0.527 5.527 22 Si 0.734 3.266 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.199 1.199 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.196 0.804 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.937 16.003 2.120 16.616 hybrid contribution -0.369 0.254 0.877 0.985 sum 3.568 16.257 2.997 16.911 Atomic orbital electron populations 1.20466 0.87139 1.03938 1.03351 1.21331 0.94715 0.86515 0.95498 1.19541 0.93262 0.92059 1.28806 1.16886 0.81774 0.83225 0.75504 1.90707 1.26650 1.81799 1.43785 1.49750 1.22386 1.09720 1.55938 1.22543 0.87452 0.95847 0.91790 0.89215 1.22452 1.02965 0.97379 1.00366 1.23665 0.99465 0.98330 0.97252 1.22544 0.96748 0.83170 0.94795 0.89529 1.21913 0.95684 1.00893 1.02750 1.23762 0.96353 0.92473 1.00208 1.77144 0.98635 1.12034 1.24102 1.49288 1.02404 1.08114 1.49282 1.19821 0.96373 0.71012 0.99318 1.21216 1.47538 0.98108 0.91038 0.91751 1.24919 0.94480 0.96000 0.98204 1.69902 1.44444 1.07214 1.31101 0.86395 0.78852 0.77779 0.83566 1.19896 1.20864 1.19910 0.90221 0.89766 0.90193 0.90146 0.91649 0.91620 0.88704 0.89672 0.92243 0.91802 0.91281 0.80450 0.92659 0.92544 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 9.28 36.00 0.33 -1.34 16 2 C 0.16 3.25 7.00 -81.60 -0.57 2.68 16 3 C -0.32 -6.16 5.42 -105.07 -0.57 -6.73 16 4 C 0.63 11.39 7.62 -12.51 -0.10 11.30 16 5 O -0.55 -11.25 16.04 5.28 0.08 -11.17 16 6 N -0.64 -8.91 3.44 -170.80 -0.59 -9.50 16 7 C 0.13 1.32 4.03 -72.40 -0.29 1.03 16 8 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 9 C -0.17 -2.03 8.18 37.16 0.30 -1.72 16 10 C -0.15 -1.25 7.58 -26.08 -0.20 -1.45 16 11 C 0.13 1.38 4.67 -72.26 -0.34 1.04 16 12 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 13 C -0.15 -1.67 9.46 37.15 0.35 -1.32 16 14 C 0.06 1.05 8.69 -16.98 -0.15 0.90 16 15 N -0.30 -6.51 12.50 30.86 0.39 -6.13 16 16 N -0.31 -7.18 3.56 -57.78 -0.21 -7.39 16 17 C 0.25 6.32 5.78 -5.19 -0.03 6.29 16 18 C -0.54 -14.51 9.39 -34.44 -0.32 -14.83 16 19 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 20 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 21 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 22 Si 0.91 20.70 29.54 -169.99 -5.02 15.68 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.08 1.59 7.71 -51.93 -0.40 1.19 16 28 H 0.08 1.41 7.53 -51.93 -0.39 1.02 16 29 H 0.08 1.04 4.13 -51.93 -0.21 0.83 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 36 H 0.07 0.90 7.70 -51.93 -0.40 0.50 16 37 H 0.18 2.55 6.06 -52.49 -0.32 2.24 16 38 H 0.06 1.38 7.64 -51.93 -0.40 0.99 16 39 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 330.46 15.07 4.98 4.98 Total: -1.00 -31.02 330.46 -7.19 -38.21 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.89 Total: 1.61 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.67 Total: -2.41 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.33 Total: -46.89 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.02 -7.19 -38.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897614379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.179 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds