Wall clock time and date at job start Mon Mar 30 2020 02:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38042 * 126.29273 * 2 1 4 4 C 1.47430 * 126.41208 * 0.02562 * 3 2 1 5 5 O 1.21599 * 119.99975 * 325.67703 * 4 3 2 6 6 N 1.34783 * 119.99879 * 145.67996 * 4 3 2 7 7 C 1.47062 * 136.05784 * 5.80116 * 6 4 3 8 8 H 1.08995 * 113.47340 * 92.24366 * 7 6 4 9 9 C 1.53001 * 113.46716 * 321.85885 * 7 6 4 10 10 C 1.53496 * 87.98656 * 207.08130 * 7 6 4 11 11 C 1.47070 * 136.05555 * 185.42761 * 6 4 3 12 12 H 1.09002 * 113.46373 * 267.69551 * 11 6 4 13 13 C 1.52994 * 113.46729 * 38.13290 * 11 6 4 14 14 C 1.41287 * 107.17409 * 179.75533 * 3 2 1 15 15 N 1.30448 * 108.02527 * 0.22854 * 14 3 2 16 16 N 1.34262 * 126.29419 * 180.14541 * 2 1 3 17 17 C 1.46502 * 125.75162 * 0.02562 * 16 2 1 18 18 C 1.50701 * 109.46765 * 270.24468 * 17 16 2 19 19 H 1.07997 * 120.00179 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99519 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00443 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99599 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47262 * 60.00227 * 22 20 18 24 24 H 1.48504 * 109.46722 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46977 * 299.99677 * 22 20 18 26 26 H 1.09001 * 109.46998 * 89.99875 * 1 2 3 27 27 H 1.08997 * 109.46952 * 209.99966 * 1 2 3 28 28 H 1.09000 * 109.47283 * 330.00216 * 1 2 3 29 29 H 1.08999 * 109.46920 * 84.23065 * 9 7 6 30 30 H 1.08998 * 109.47258 * 204.22358 * 9 7 6 31 31 H 1.08997 * 109.47605 * 324.22756 * 9 7 6 32 32 H 1.09003 * 114.20720 * 87.51135 * 10 7 6 33 33 H 1.08998 * 114.21107 * 220.14890 * 10 7 6 34 34 H 1.08998 * 109.47083 * 52.60771 * 13 11 6 35 35 H 1.09008 * 109.46979 * 172.60685 * 13 11 6 36 36 H 1.08998 * 109.47486 * 292.60207 * 13 11 6 37 37 H 1.07998 * 125.99186 * 180.24863 * 14 3 2 38 38 H 1.08992 * 109.47115 * 30.24864 * 17 16 2 39 39 H 1.09000 * 109.46892 * 150.25113 * 17 16 2 40 40 H 0.97001 * 120.00291 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8857 2.5203 0.0005 5 8 0.8744 2.8424 -0.5928 6 7 2.6061 3.4501 0.6586 7 6 3.8893 3.4830 1.3762 8 1 4.7317 3.7686 0.7464 9 6 4.1634 2.2184 2.1928 10 6 3.3297 4.6417 2.2132 11 6 2.4578 4.8799 0.9694 12 1 2.9227 5.5348 0.2324 13 6 1.0200 5.2858 1.2992 14 6 3.6589 0.6499 0.0058 15 7 3.6341 -0.6544 0.0040 16 7 2.3017 -1.0821 -0.0027 17 6 1.8501 -2.4758 -0.0068 18 6 1.6890 -2.9557 1.4126 19 1 1.9013 -2.2892 2.2354 20 6 1.2705 -4.2458 1.6608 21 7 1.0124 -5.0576 0.6589 22 14 1.0701 -4.8405 3.4203 23 1 0.0653 -3.9973 4.1164 24 1 0.6136 -6.2536 3.4161 25 1 2.3726 -4.7437 4.1269 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 4.6010 1.4570 1.5473 30 1 4.8562 2.4511 3.0014 31 1 3.2282 1.8463 2.6112 32 1 2.7757 4.3273 3.0977 33 1 4.0489 5.4355 2.4149 34 1 0.6292 4.6352 2.0816 35 1 1.0045 6.3195 1.6448 36 1 0.4020 5.1920 0.4063 37 1 4.5448 1.2676 0.0110 38 1 0.8938 -2.5463 -0.5250 39 1 2.5871 -3.0950 -0.5182 40 1 0.7184 -5.9654 0.8335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897614379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:30 Heat of formation + Delta-G solvation = 52.342740 kcal Electronic energy + Delta-G solvation = -21998.284471 eV Core-core repulsion = 18815.228632 eV Total energy + Delta-G solvation = -3183.055839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.43348 -41.17848 -38.65659 -35.85114 -34.02700 -32.98406 -32.20713 -31.21124 -29.31310 -28.28073 -27.84786 -25.33138 -23.96940 -22.42011 -21.93290 -20.82302 -19.60657 -18.85363 -18.25812 -17.10185 -16.86289 -16.47225 -16.21837 -15.70115 -15.56017 -14.84493 -14.80276 -14.48927 -14.33915 -14.10164 -13.87356 -13.71148 -13.39660 -13.25863 -13.10799 -12.98692 -12.72076 -12.65030 -12.46257 -12.37955 -12.29501 -12.23769 -11.84333 -11.72980 -11.14254 -10.76644 -10.66951 -10.18140 -9.72279 -9.34334 -8.37739 -6.54863 0.73457 1.33180 1.37992 1.38705 1.47079 1.63166 2.01959 2.31731 2.37039 2.93974 3.46472 3.60509 3.71063 3.96912 4.06351 4.12414 4.16585 4.30005 4.34305 4.40205 4.45666 4.59441 4.65052 4.77363 4.81224 4.90652 4.93896 4.95487 4.98532 5.08298 5.09966 5.21981 5.27153 5.41930 5.48346 5.52707 5.69001 5.74255 6.05074 6.54135 6.81991 6.84419 7.16284 7.32615 8.69854 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024026 B = 0.004655 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.144602 B = 6013.706968 C = 6206.166276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.136 3.864 3 C -0.320 4.320 4 C 0.628 3.372 5 O -0.586 6.586 6 N -0.646 5.646 7 C 0.122 3.878 8 H 0.123 0.877 9 C -0.170 4.170 10 C -0.127 4.127 11 C 0.122 3.878 12 H 0.111 0.889 13 C -0.152 4.152 14 C 0.081 3.919 15 N -0.335 5.335 16 N -0.337 5.337 17 C 0.268 3.732 18 C -0.555 4.555 19 H 0.052 0.948 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.972 3.028 23 H -0.267 1.267 24 H -0.273 1.273 25 H -0.272 1.272 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.042 0.958 35 H 0.095 0.905 36 H 0.040 0.960 37 H 0.219 0.781 38 H 0.048 0.952 39 H 0.031 0.969 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.453 19.943 4.172 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.000 4.000 3 C -0.335 4.335 4 C 0.419 3.581 5 O -0.468 6.468 6 N -0.382 5.382 7 C 0.020 3.980 8 H 0.140 0.860 9 C -0.228 4.228 10 C -0.164 4.164 11 C 0.020 3.980 12 H 0.129 0.871 13 C -0.210 4.210 14 C -0.105 4.105 15 N -0.155 5.155 16 N -0.114 5.114 17 C 0.150 3.850 18 C -0.593 4.593 19 H 0.071 0.929 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.795 3.205 23 H -0.191 1.191 24 H -0.198 1.198 25 H -0.197 1.197 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.145 0.855 34 H 0.062 0.938 35 H 0.114 0.886 36 H 0.060 0.940 37 H 0.235 0.765 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.420 18.505 3.684 19.631 hybrid contribution -0.752 -0.353 0.405 0.925 sum 4.668 18.151 4.089 19.183 Atomic orbital electron populations 1.20429 0.86124 1.03619 1.03887 1.21819 0.95737 0.86679 0.95729 1.19851 0.93407 0.92772 1.27504 1.16712 0.81998 0.83335 0.76028 1.90681 1.28193 1.82269 1.45648 1.49931 1.23374 1.10829 1.54041 1.22960 0.86938 0.95970 0.92126 0.85961 1.22385 1.01750 0.97576 1.01057 1.23602 0.99082 0.98142 0.95594 1.22953 0.97120 0.81310 0.96577 0.87148 1.21890 0.95547 1.02550 1.00975 1.24355 0.97334 0.91503 0.97297 1.77087 0.98360 1.13924 1.26168 1.49031 1.03228 1.07572 1.51583 1.19348 0.95124 0.72333 0.98221 1.21354 1.48058 0.98482 0.91448 0.92932 1.25739 0.93788 0.95900 1.02281 1.69992 1.44789 1.07621 1.33104 0.85400 0.78859 0.77669 0.78561 1.19143 1.19783 1.19717 0.89267 0.90782 0.89547 0.91669 0.88884 0.94891 0.89322 0.85484 0.93838 0.88625 0.94044 0.76521 0.93438 0.95139 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.17 9.28 71.23 0.66 -2.50 16 2 C 0.14 5.83 7.00 42.14 0.29 6.13 16 3 C -0.32 -12.30 5.42 -20.15 -0.11 -12.41 16 4 C 0.63 22.28 7.62 86.66 0.66 22.94 16 5 O -0.59 -24.16 16.04 -4.03 -0.06 -24.22 16 6 N -0.65 -16.58 3.44 -812.54 -2.79 -19.38 16 7 C 0.12 2.07 4.03 41.79 0.17 2.23 16 8 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 9 C -0.17 -3.53 8.18 71.98 0.59 -2.95 16 10 C -0.13 -1.53 7.58 31.02 0.24 -1.30 16 11 C 0.12 2.17 4.67 41.88 0.20 2.37 16 12 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 13 C -0.15 -3.00 9.46 71.98 0.68 -2.32 16 14 C 0.08 2.89 8.69 85.65 0.74 3.63 16 15 N -0.34 -14.88 12.50 -56.28 -0.70 -15.58 16 16 N -0.34 -16.03 3.56 -336.71 -1.20 -17.23 16 17 C 0.27 14.15 5.78 85.63 0.49 14.65 16 18 C -0.56 -30.78 9.39 25.60 0.24 -30.54 16 19 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 20 C 0.02 1.32 5.46 84.66 0.46 1.78 16 21 N -0.92 -51.72 13.29 21.45 0.28 -51.43 16 22 Si 0.97 42.59 29.54 68.60 2.03 44.62 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 26 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 27 H 0.07 2.94 7.71 -2.39 -0.02 2.93 16 28 H 0.09 3.15 7.53 -2.39 -0.02 3.13 16 29 H 0.06 1.54 4.13 -2.39 -0.01 1.53 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.03 0.90 8.10 -2.39 -0.02 0.88 16 32 H 0.09 1.25 8.10 -2.39 -0.02 1.23 16 33 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.04 1.05 7.70 -2.39 -0.02 1.03 16 37 H 0.22 5.72 6.06 -2.91 -0.02 5.70 16 38 H 0.05 2.52 7.64 -2.39 -0.02 2.50 16 39 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -70.28 330.46 3.90 -66.39 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.03 Total: 15.12 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 5.32 Total: 1.72 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -4.41 Total: -103.62 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.06 Total: -24.22 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -70.28 3.90 -66.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897614379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.729 kcal (2) G-P(sol) polarization free energy of solvation -70.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds