Wall clock time and date at job start Mon Mar 30 2020 02:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38043 * 126.29350 * 2 1 4 4 C 1.47430 * 126.41230 * 0.02562 * 3 2 1 5 5 O 1.21604 * 119.99997 * 355.46294 * 4 3 2 6 6 N 1.34780 * 120.00125 * 175.46156 * 4 3 2 7 7 C 1.47069 * 136.05567 * 184.90656 * 6 4 3 8 8 H 1.08998 * 113.46470 * 92.38065 * 7 6 4 9 9 C 1.52992 * 113.47272 * 321.94053 * 7 6 4 10 10 C 1.53239 * 88.08265 * 207.20792 * 7 6 4 11 11 C 1.47067 * 136.05707 * 5.28365 * 6 4 3 12 12 H 1.09002 * 113.46657 * 38.06455 * 11 6 4 13 13 C 1.52998 * 113.46388 * 267.68131 * 11 6 4 14 14 C 1.41282 * 107.17496 * 180.26173 * 3 2 1 15 15 N 1.30447 * 108.02261 * 359.75042 * 14 3 2 16 16 N 1.34268 * 126.29317 * 179.82841 * 2 1 3 17 17 C 1.46493 * 125.75289 * 359.97438 * 16 2 1 18 18 C 1.50704 * 109.46904 * 269.72218 * 17 16 2 19 19 H 1.08005 * 120.00057 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99934 * 179.73033 * 18 17 16 21 21 N 1.31509 * 119.99663 * 0.26579 * 20 18 17 22 22 Si 1.86794 * 119.99825 * 180.27212 * 20 18 17 23 23 H 1.48502 * 109.47285 * 59.99327 * 22 20 18 24 24 H 1.48500 * 109.47247 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47419 * 299.99403 * 22 20 18 26 26 H 1.08998 * 109.46621 * 270.20071 * 1 2 3 27 27 H 1.08992 * 109.47334 * 30.20055 * 1 2 3 28 28 H 1.09004 * 109.46844 * 150.20472 * 1 2 3 29 29 H 1.09009 * 109.47149 * 65.02931 * 9 7 6 30 30 H 1.08995 * 109.47497 * 185.03165 * 9 7 6 31 31 H 1.08999 * 109.47141 * 305.03261 * 9 7 6 32 32 H 1.08996 * 114.32698 * 220.47454 * 10 7 6 33 33 H 1.08996 * 114.19733 * 87.72678 * 10 7 6 34 34 H 1.08994 * 109.47512 * 60.00104 * 13 11 6 35 35 H 1.09008 * 109.46622 * 179.97438 * 13 11 6 36 36 H 1.08995 * 109.47271 * 299.99275 * 13 11 6 37 37 H 1.08004 * 125.99075 * 179.78401 * 14 3 2 38 38 H 1.08994 * 109.47440 * 149.71999 * 17 16 2 39 39 H 1.09007 * 109.47318 * 29.71690 * 17 16 2 40 40 H 0.97004 * 119.99221 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.7027 2.7887 -0.0823 6 7 2.7965 3.5096 0.0928 7 6 2.7596 4.9749 0.2126 8 1 2.7781 5.3267 1.2441 9 6 1.6504 5.6263 -0.6156 10 6 4.1310 5.0138 -0.4701 11 6 4.2643 3.5994 0.1114 12 1 4.7508 2.8963 -0.5646 13 6 4.8585 3.5722 1.5210 14 6 3.6590 0.6499 -0.0062 15 7 3.6341 -0.6543 -0.0042 16 7 2.3018 -1.0822 0.0032 17 6 1.8502 -2.4758 0.0079 18 6 1.7024 -2.9511 1.4304 19 1 1.9233 -2.2821 2.2490 20 6 1.2805 -4.2385 1.6868 21 7 1.0120 -5.0532 0.6899 22 14 1.0900 -4.8252 3.4499 23 1 0.0937 -3.9750 4.1497 24 1 0.6266 -6.2361 3.4548 25 1 2.3978 -4.7310 4.1470 26 1 -0.3632 0.0036 1.0277 27 1 -0.3633 0.8881 -0.5169 28 1 -0.3633 -0.8919 -0.5107 29 1 0.6791 5.3162 -0.2299 30 1 1.7377 6.7108 -0.5508 31 1 1.7440 5.3159 -1.6563 32 1 4.8242 5.7391 -0.0443 33 1 4.0873 5.0471 -1.5587 34 1 4.5820 2.6403 2.0140 35 1 5.9446 3.6417 1.4588 36 1 4.4725 4.4150 2.0944 37 1 4.5449 1.2677 -0.0111 38 1 2.5822 -3.0967 -0.5084 39 1 0.8889 -2.5480 -0.5009 40 1 0.7148 -5.9588 0.8704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897614381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:33 Heat of formation + Delta-G solvation = 64.041996 kcal Electronic energy + Delta-G solvation = -21755.193783 eV Core-core repulsion = 18572.645262 eV Total energy + Delta-G solvation = -3182.548521 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.98780 -40.16286 -37.38754 -33.89019 -32.17647 -31.51513 -30.95675 -30.19677 -27.51068 -26.93364 -26.49479 -23.60865 -22.54424 -22.41401 -20.64561 -19.12062 -17.96604 -16.83168 -16.53483 -16.10993 -15.51033 -15.18594 -14.69850 -14.35474 -14.02119 -13.71014 -13.33841 -13.12923 -12.93945 -12.78809 -12.47639 -12.41337 -12.07218 -11.93996 -11.83495 -11.73997 -11.62949 -11.44554 -11.33594 -11.11997 -10.86275 -10.35649 -10.31229 -10.10624 -9.93893 -9.25088 -8.69857 -8.60391 -8.52915 -7.85466 -6.32595 -4.40385 2.22918 2.81820 2.94593 3.20416 3.24316 3.27311 3.44616 3.93459 4.18520 4.24997 4.67288 4.79276 4.96489 5.00752 5.02656 5.11932 5.23322 5.31808 5.39525 5.50786 5.57965 5.67752 5.69634 5.75825 5.80493 5.90283 5.94658 6.12487 6.16598 6.19206 6.32682 6.49145 6.63102 6.83574 6.92575 7.20230 7.57251 7.78531 7.81365 8.01080 8.40434 8.63673 8.67637 9.26285 10.75617 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028548 B = 0.004244 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.553682 B = 6596.474384 C = 6883.951370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.163 3.837 3 C -0.326 4.326 4 C 0.633 3.367 5 O -0.553 6.553 6 N -0.641 5.641 7 C 0.133 3.867 8 H 0.087 0.913 9 C -0.155 4.155 10 C -0.150 4.150 11 C 0.121 3.879 12 H 0.089 0.911 13 C -0.160 4.160 14 C 0.054 3.946 15 N -0.297 5.297 16 N -0.314 5.314 17 C 0.252 3.748 18 C -0.540 4.540 19 H 0.064 0.936 20 C 0.068 3.932 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.176 0.824 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.485 18.516 -1.798 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.026 3.974 3 C -0.342 4.342 4 C 0.427 3.573 5 O -0.432 6.432 6 N -0.377 5.377 7 C 0.030 3.970 8 H 0.105 0.895 9 C -0.212 4.212 10 C -0.188 4.188 11 C 0.017 3.983 12 H 0.107 0.893 13 C -0.218 4.218 14 C -0.133 4.133 15 N -0.117 5.117 16 N -0.091 5.091 17 C 0.134 3.866 18 C -0.578 4.578 19 H 0.082 0.918 20 C -0.136 4.136 21 N -0.527 5.527 22 Si 0.735 3.265 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.193 0.807 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.294 16.991 -1.916 17.900 hybrid contribution -0.391 0.147 1.060 1.140 sum 4.903 17.138 -0.856 17.847 Atomic orbital electron populations 1.20574 0.86840 1.03852 1.03849 1.21459 0.94919 0.86519 0.94529 1.19615 0.93147 0.92204 1.29204 1.16843 0.83592 0.82744 0.74133 1.90675 1.16267 1.83948 1.52346 1.49580 1.06943 1.06526 1.74686 1.22474 0.94820 0.80585 0.99103 0.89483 1.21934 0.99447 0.99639 1.00225 1.23539 0.97122 0.96729 1.01361 1.22473 0.81959 0.96694 0.97158 0.89322 1.22042 1.00973 1.03290 0.95521 1.23964 0.96629 0.92477 1.00199 1.77136 0.98612 1.12309 1.23691 1.49357 1.02506 1.08253 1.48974 1.19838 0.96382 0.70937 0.99401 1.21210 1.47410 0.98245 0.90982 0.91759 1.24917 0.94434 0.95961 0.98302 1.69905 1.44327 1.07235 1.31260 0.86380 0.78864 0.77745 0.83527 1.19871 1.20846 1.19902 0.89968 0.88740 0.90850 0.91127 0.91978 0.92287 0.89513 0.88788 0.91234 0.90977 0.92021 0.80686 0.92542 0.92588 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.75 9.61 36.01 0.35 -1.41 16 2 C 0.16 3.46 7.01 -81.60 -0.57 2.89 16 3 C -0.33 -6.36 6.12 -105.07 -0.64 -7.01 16 4 C 0.63 11.42 7.99 -12.52 -0.10 11.32 16 5 O -0.55 -11.14 14.48 5.27 0.08 -11.07 16 6 N -0.64 -8.83 3.37 -171.09 -0.58 -9.41 16 7 C 0.13 1.40 4.31 -72.52 -0.31 1.08 16 8 H 0.09 0.83 7.37 -51.93 -0.38 0.45 16 9 C -0.15 -1.64 9.37 37.15 0.35 -1.29 16 10 C -0.15 -1.17 7.57 -26.35 -0.20 -1.37 16 11 C 0.12 1.22 3.42 -72.39 -0.25 0.97 16 12 H 0.09 0.87 6.31 -51.93 -0.33 0.55 16 13 C -0.16 -1.42 9.67 37.16 0.36 -1.06 16 14 C 0.05 1.00 11.17 -16.98 -0.19 0.81 16 15 N -0.30 -6.62 12.50 30.86 0.39 -6.23 16 16 N -0.31 -7.31 3.56 -57.78 -0.21 -7.52 16 17 C 0.25 6.38 5.97 -5.20 -0.03 6.35 16 18 C -0.54 -14.75 9.39 -34.44 -0.32 -15.08 16 19 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 20 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 21 N -0.89 -24.81 13.29 55.43 0.74 -24.07 16 22 Si 0.91 20.99 29.54 -169.99 -5.02 15.96 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 27 H 0.09 1.71 6.43 -51.93 -0.33 1.38 16 28 H 0.07 1.34 7.05 -51.93 -0.37 0.97 16 29 H 0.07 0.92 7.52 -51.92 -0.39 0.53 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.09 0.48 8.11 -51.93 -0.42 0.06 16 33 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 36 H 0.06 0.50 7.09 -51.93 -0.37 0.13 16 37 H 0.18 2.53 5.16 -52.48 -0.27 2.26 16 38 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.06 1.41 7.01 -51.93 -0.36 1.05 16 40 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -31.41 330.12 -7.01 -38.42 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.72 Total: 1.00 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -1.66 Total: -2.06 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.34 Total: -47.23 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.41 -7.01 -38.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897614381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.462 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds