Wall clock time and date at job start Mon Mar 30 2020 02:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38043 * 126.29350 * 2 1 4 4 C 1.47430 * 126.41230 * 0.02562 * 3 2 1 5 5 O 1.21604 * 119.99997 * 355.46294 * 4 3 2 6 6 N 1.34780 * 120.00125 * 175.46156 * 4 3 2 7 7 C 1.47069 * 136.05567 * 184.90656 * 6 4 3 8 8 H 1.08998 * 113.46470 * 92.38065 * 7 6 4 9 9 C 1.52992 * 113.47272 * 321.94053 * 7 6 4 10 10 C 1.53239 * 88.08265 * 207.20792 * 7 6 4 11 11 C 1.47067 * 136.05707 * 5.28365 * 6 4 3 12 12 H 1.09002 * 113.46657 * 38.06455 * 11 6 4 13 13 C 1.52998 * 113.46388 * 267.68131 * 11 6 4 14 14 C 1.41282 * 107.17496 * 180.26173 * 3 2 1 15 15 N 1.30447 * 108.02261 * 359.75042 * 14 3 2 16 16 N 1.34268 * 126.29317 * 179.82841 * 2 1 3 17 17 C 1.46493 * 125.75289 * 359.97438 * 16 2 1 18 18 C 1.50704 * 109.46904 * 269.72218 * 17 16 2 19 19 H 1.08005 * 120.00057 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99934 * 179.73033 * 18 17 16 21 21 N 1.31509 * 119.99663 * 0.26579 * 20 18 17 22 22 Si 1.86794 * 119.99825 * 180.27212 * 20 18 17 23 23 H 1.48502 * 109.47285 * 59.99327 * 22 20 18 24 24 H 1.48500 * 109.47247 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47419 * 299.99403 * 22 20 18 26 26 H 1.08998 * 109.46621 * 270.20071 * 1 2 3 27 27 H 1.08992 * 109.47334 * 30.20055 * 1 2 3 28 28 H 1.09004 * 109.46844 * 150.20472 * 1 2 3 29 29 H 1.09009 * 109.47149 * 65.02931 * 9 7 6 30 30 H 1.08995 * 109.47497 * 185.03165 * 9 7 6 31 31 H 1.08999 * 109.47141 * 305.03261 * 9 7 6 32 32 H 1.08996 * 114.32698 * 220.47454 * 10 7 6 33 33 H 1.08996 * 114.19733 * 87.72678 * 10 7 6 34 34 H 1.08994 * 109.47512 * 60.00104 * 13 11 6 35 35 H 1.09008 * 109.46622 * 179.97438 * 13 11 6 36 36 H 1.08995 * 109.47271 * 299.99275 * 13 11 6 37 37 H 1.08004 * 125.99075 * 179.78401 * 14 3 2 38 38 H 1.08994 * 109.47440 * 149.71999 * 17 16 2 39 39 H 1.09007 * 109.47318 * 29.71690 * 17 16 2 40 40 H 0.97004 * 119.99221 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.7027 2.7887 -0.0823 6 7 2.7965 3.5096 0.0928 7 6 2.7596 4.9749 0.2126 8 1 2.7781 5.3267 1.2441 9 6 1.6504 5.6263 -0.6156 10 6 4.1310 5.0138 -0.4701 11 6 4.2643 3.5994 0.1114 12 1 4.7508 2.8963 -0.5646 13 6 4.8585 3.5722 1.5210 14 6 3.6590 0.6499 -0.0062 15 7 3.6341 -0.6543 -0.0042 16 7 2.3018 -1.0822 0.0032 17 6 1.8502 -2.4758 0.0079 18 6 1.7024 -2.9511 1.4304 19 1 1.9233 -2.2821 2.2490 20 6 1.2805 -4.2385 1.6868 21 7 1.0120 -5.0532 0.6899 22 14 1.0900 -4.8252 3.4499 23 1 0.0937 -3.9750 4.1497 24 1 0.6266 -6.2361 3.4548 25 1 2.3978 -4.7310 4.1470 26 1 -0.3632 0.0036 1.0277 27 1 -0.3633 0.8881 -0.5169 28 1 -0.3633 -0.8919 -0.5107 29 1 0.6791 5.3162 -0.2299 30 1 1.7377 6.7108 -0.5508 31 1 1.7440 5.3159 -1.6563 32 1 4.8242 5.7391 -0.0443 33 1 4.0873 5.0471 -1.5587 34 1 4.5820 2.6403 2.0140 35 1 5.9446 3.6417 1.4588 36 1 4.4725 4.4150 2.0944 37 1 4.5449 1.2677 -0.0111 38 1 2.5822 -3.0967 -0.5084 39 1 0.8889 -2.5480 -0.5009 40 1 0.7148 -5.9588 0.8704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897614381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:33 Heat of formation + Delta-G solvation = 44.370281 kcal Electronic energy + Delta-G solvation = -21756.046813 eV Core-core repulsion = 18572.645262 eV Total energy + Delta-G solvation = -3183.401551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.42395 -41.30997 -38.71258 -35.84056 -33.96034 -32.87715 -32.05579 -31.40880 -29.09755 -28.22202 -27.75940 -25.44566 -23.85748 -23.33706 -21.96389 -20.68897 -19.24894 -18.86096 -17.81570 -17.15030 -16.88613 -16.57500 -16.44045 -15.88847 -15.37620 -14.99819 -14.65525 -14.38549 -14.22447 -14.07193 -13.80676 -13.68565 -13.59698 -13.27400 -13.12884 -13.01531 -12.79403 -12.70992 -12.59926 -12.48844 -12.31057 -12.10569 -11.89920 -11.70085 -11.11468 -10.77723 -10.62372 -10.30306 -9.78198 -9.35591 -8.39519 -6.56308 0.65139 1.27722 1.36782 1.37690 1.46111 1.59514 2.01376 2.31143 2.52745 2.92477 3.43105 3.54393 3.70017 3.94878 4.05395 4.15260 4.17394 4.26500 4.32727 4.37523 4.48694 4.55218 4.64527 4.75818 4.86394 4.90326 4.95521 4.98707 5.07129 5.09914 5.11358 5.19485 5.25746 5.41374 5.46605 5.51400 5.66168 5.72460 6.01484 6.51938 6.77393 6.85261 7.14686 7.33472 8.68340 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028548 B = 0.004244 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.553682 B = 6596.474384 C = 6883.951370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.142 3.858 3 C -0.327 4.327 4 C 0.626 3.374 5 O -0.585 6.585 6 N -0.646 5.646 7 C 0.123 3.877 8 H 0.103 0.897 9 C -0.151 4.151 10 C -0.123 4.123 11 C 0.111 3.889 12 H 0.092 0.908 13 C -0.156 4.156 14 C 0.075 3.925 15 N -0.334 5.334 16 N -0.336 5.336 17 C 0.267 3.733 18 C -0.558 4.558 19 H 0.051 0.949 20 C 0.025 3.975 21 N -0.916 5.916 22 Si 0.972 3.028 23 H -0.268 1.268 24 H -0.271 1.271 25 H -0.272 1.272 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.124 0.876 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.217 0.783 38 H 0.032 0.968 39 H 0.050 0.950 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.033 20.806 -0.957 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.006 3.994 3 C -0.342 4.342 4 C 0.418 3.582 5 O -0.467 6.467 6 N -0.381 5.381 7 C 0.021 3.979 8 H 0.120 0.880 9 C -0.209 4.209 10 C -0.161 4.161 11 C 0.008 3.992 12 H 0.110 0.890 13 C -0.214 4.214 14 C -0.111 4.111 15 N -0.154 5.154 16 N -0.114 5.114 17 C 0.149 3.851 18 C -0.596 4.596 19 H 0.069 0.931 20 C -0.177 4.177 21 N -0.554 5.554 22 Si 0.795 3.205 23 H -0.192 1.192 24 H -0.196 1.196 25 H -0.197 1.197 26 H 0.100 0.900 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.111 0.889 31 H 0.068 0.932 32 H 0.142 0.858 33 H 0.116 0.884 34 H 0.062 0.938 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.233 0.767 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.882 19.328 -1.081 20.545 hybrid contribution -0.800 -0.398 0.760 1.173 sum 6.082 18.930 -0.321 19.886 Atomic orbital electron populations 1.20541 0.85824 1.04069 1.03859 1.21951 0.95940 0.86678 0.94783 1.19972 0.93285 0.93046 1.27894 1.16688 0.83867 0.82919 0.74691 1.90648 1.17668 1.84366 1.54012 1.49766 1.08396 1.07428 1.72502 1.22868 0.96408 0.78184 1.00414 0.87972 1.21902 0.97947 1.01629 0.99392 1.23475 0.95450 0.95619 1.01527 1.22847 0.79525 0.98454 0.98361 0.89039 1.22039 1.02702 1.02348 0.94317 1.24567 0.97643 0.91499 0.97427 1.77080 0.98399 1.14208 1.25734 1.49118 1.03302 1.07763 1.51178 1.19383 0.95289 0.72203 0.98242 1.21350 1.48121 0.98659 0.91443 0.93115 1.25731 0.93706 0.95820 1.02396 1.69989 1.44529 1.07653 1.33219 0.85396 0.78839 0.77731 0.78502 1.19241 1.19587 1.19748 0.89998 0.88112 0.90866 0.94231 0.88883 0.93245 0.85774 0.88355 0.93849 0.88207 0.90990 0.76734 0.94976 0.93174 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.32 9.61 71.24 0.68 -2.64 16 2 C 0.14 6.22 7.01 42.14 0.30 6.52 16 3 C -0.33 -12.78 6.12 -20.15 -0.12 -12.91 16 4 C 0.63 22.39 7.99 86.66 0.69 23.08 16 5 O -0.58 -23.88 14.48 -4.04 -0.06 -23.93 16 6 N -0.65 -16.61 3.37 -813.46 -2.74 -19.35 16 7 C 0.12 2.21 4.31 41.71 0.18 2.39 16 8 H 0.10 1.58 7.37 -2.39 -0.02 1.56 16 9 C -0.15 -2.92 9.37 71.98 0.67 -2.25 16 10 C -0.12 -1.37 7.57 30.84 0.23 -1.14 16 11 C 0.11 1.85 3.42 41.80 0.14 1.99 16 12 H 0.09 1.48 6.31 -2.39 -0.02 1.47 16 13 C -0.16 -2.21 9.67 71.98 0.70 -1.52 16 14 C 0.07 2.73 11.17 85.65 0.96 3.69 16 15 N -0.33 -15.10 12.50 -56.28 -0.70 -15.81 16 16 N -0.34 -16.22 3.56 -336.70 -1.20 -17.42 16 17 C 0.27 14.19 5.97 85.64 0.51 14.70 16 18 C -0.56 -31.34 9.39 25.60 0.24 -31.10 16 19 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 20 C 0.03 1.37 5.46 84.66 0.46 1.83 16 21 N -0.92 -51.81 13.29 21.45 0.28 -51.53 16 22 Si 0.97 43.08 29.54 68.60 2.03 45.11 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 27 H 0.10 3.78 6.43 -2.39 -0.02 3.76 16 28 H 0.07 2.80 7.05 -2.39 -0.02 2.78 16 29 H 0.04 1.02 7.52 -2.38 -0.02 1.00 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.04 8.07 -2.39 -0.02 1.02 16 32 H 0.12 0.59 8.11 -2.39 -0.02 0.57 16 33 H 0.10 1.09 8.07 -2.39 -0.02 1.07 16 34 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.07 0.88 7.09 -2.39 -0.02 0.87 16 37 H 0.22 5.73 5.16 -2.91 -0.02 5.72 16 38 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.05 2.66 7.01 -2.38 -0.02 2.65 16 40 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -70.43 330.12 4.29 -66.14 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 1.04 Total: 14.15 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 5.65 Total: 2.65 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -4.36 Total: -104.11 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.06 Total: -23.93 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -70.43 4.29 -66.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897614381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.506 kcal (2) G-P(sol) polarization free energy of solvation -70.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds