Wall clock time and date at job start Mon Mar 30 2020 02:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38048 * 126.28906 * 2 1 4 4 C 1.47426 * 126.41549 * 359.97438 * 3 2 1 5 5 O 1.21603 * 120.00069 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00180 * 179.97438 * 4 3 2 7 7 C 1.47079 * 136.05421 * 359.63584 * 6 4 3 8 8 H 1.08998 * 113.46683 * 321.93281 * 7 6 4 9 9 C 1.52994 * 113.46359 * 92.37525 * 7 6 4 10 10 C 1.53239 * 88.07999 * 207.20087 * 7 6 4 11 11 C 1.47063 * 136.06201 * 180.02562 * 6 4 3 12 12 H 1.08997 * 113.47034 * 267.62666 * 11 6 4 13 13 C 1.53001 * 113.46791 * 38.00967 * 11 6 4 14 14 C 1.41287 * 107.16717 * 180.02562 * 3 2 1 15 15 N 1.30447 * 108.02773 * 359.74252 * 14 3 2 16 16 N 1.34260 * 126.29250 * 180.02562 * 2 1 3 17 17 C 1.46499 * 125.75214 * 359.95666 * 16 2 1 18 18 C 1.50701 * 109.46992 * 89.99999 * 17 16 2 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47432 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46890 * 120.00210 * 22 20 18 25 25 H 1.48501 * 109.47062 * 240.00257 * 22 20 18 26 26 H 1.08998 * 109.47130 * 270.00000 * 1 2 3 27 27 H 1.08995 * 109.47112 * 30.00351 * 1 2 3 28 28 H 1.09004 * 109.46886 * 150.00247 * 1 2 3 29 29 H 1.08993 * 109.47796 * 59.99985 * 9 7 6 30 30 H 1.09005 * 109.46786 * 180.02562 * 9 7 6 31 31 H 1.09007 * 109.47037 * 299.99543 * 9 7 6 32 32 H 1.09001 * 114.32410 * 220.46789 * 10 7 6 33 33 H 1.08994 * 114.01741 * 87.71635 * 10 7 6 34 34 H 1.09003 * 109.47273 * 59.99929 * 13 11 6 35 35 H 1.08996 * 109.47231 * 179.97438 * 13 11 6 36 36 H 1.09003 * 109.46991 * 300.00509 * 13 11 6 37 37 H 1.08004 * 125.98679 * 179.97438 * 14 3 2 38 38 H 1.09002 * 109.47391 * 329.99990 * 17 16 2 39 39 H 1.09001 * 109.46813 * 210.00046 * 17 16 2 40 40 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6995 2.7878 -0.0006 6 7 2.7998 3.5108 0.0001 7 6 4.2681 3.5968 0.0077 8 1 4.7440 2.8391 0.6301 9 6 4.8804 3.6842 -1.3916 10 6 4.1334 4.9567 0.7010 11 6 2.7681 4.9810 0.0003 12 1 2.8006 5.4161 -0.9986 13 6 1.6490 5.5662 0.8641 14 6 3.6590 0.6499 -0.0006 15 7 3.6341 -0.6543 0.0046 16 7 2.3017 -1.0821 -0.0005 17 6 1.8501 -2.4758 -0.0002 18 6 1.6944 -2.9536 -1.4210 19 1 1.9106 -2.2861 -2.2420 20 6 1.2768 -4.2434 -1.6726 21 7 1.0140 -5.0563 -0.6729 22 14 1.0845 -4.8358 -3.4337 23 1 1.4405 -3.7372 -4.3673 24 1 1.9840 -5.9942 -3.6672 25 1 -0.3232 -5.2473 -3.6666 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 4.5039 4.5727 -1.8982 30 1 5.9658 3.7445 -1.3101 31 1 4.6082 2.7970 -1.9635 32 1 4.8323 5.7134 0.3448 33 1 4.0766 4.8968 1.7878 34 1 1.7798 5.2422 1.8966 35 1 1.6857 6.6546 0.8179 36 1 0.6846 5.2187 0.4937 37 1 4.5449 1.2677 -0.0012 38 1 0.8918 -2.5471 0.5142 39 1 2.5851 -3.0957 0.5132 40 1 0.7199 -5.9635 -0.8500 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897614383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:36 Heat of formation + Delta-G solvation = 63.824693 kcal Electronic energy + Delta-G solvation = -21748.697088 eV Core-core repulsion = 18566.139144 eV Total energy + Delta-G solvation = -3182.557944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.98969 -40.16312 -37.38828 -33.89437 -32.16911 -31.50979 -30.96531 -30.19754 -27.50483 -26.94857 -26.49436 -23.60968 -22.54846 -22.41606 -20.63842 -19.12799 -17.96522 -16.83455 -16.54461 -16.10846 -15.51906 -15.15319 -14.69575 -14.36091 -14.07285 -13.61876 -13.34349 -13.12842 -12.96246 -12.77224 -12.49062 -12.44900 -12.06722 -11.93344 -11.84726 -11.74527 -11.62873 -11.44463 -11.33145 -11.08499 -10.91045 -10.35851 -10.30908 -10.10486 -9.90024 -9.24123 -8.71262 -8.60350 -8.52808 -7.85990 -6.33247 -4.41027 2.22828 2.81524 2.94959 3.17187 3.25116 3.29790 3.45293 3.93529 4.18795 4.24812 4.66671 4.80978 4.94830 4.99914 5.01986 5.11364 5.23469 5.31829 5.39435 5.50886 5.57459 5.67649 5.69202 5.77545 5.80330 5.89716 5.93711 6.11586 6.15192 6.19319 6.33858 6.53491 6.65704 6.82157 6.91591 7.20323 7.57537 7.78085 7.81270 8.00910 8.40366 8.64110 8.68004 9.25995 10.74962 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029047 B = 0.004222 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.732699 B = 6630.475518 C = 6923.236082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.164 3.836 3 C -0.326 4.326 4 C 0.632 3.368 5 O -0.554 6.554 6 N -0.640 5.640 7 C 0.120 3.880 8 H 0.090 0.910 9 C -0.160 4.160 10 C -0.150 4.150 11 C 0.133 3.867 12 H 0.087 0.913 13 C -0.157 4.157 14 C 0.053 3.947 15 N -0.298 5.298 16 N -0.314 5.314 17 C 0.251 3.749 18 C -0.540 4.540 19 H 0.066 0.934 20 C 0.067 3.933 21 N -0.889 5.889 22 Si 0.908 3.092 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.177 0.823 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.512 18.491 2.319 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.026 3.974 3 C -0.341 4.341 4 C 0.427 3.573 5 O -0.433 6.433 6 N -0.377 5.377 7 C 0.016 3.984 8 H 0.107 0.893 9 C -0.218 4.218 10 C -0.187 4.187 11 C 0.030 3.970 12 H 0.105 0.895 13 C -0.215 4.215 14 C -0.133 4.133 15 N -0.118 5.118 16 N -0.091 5.091 17 C 0.134 3.866 18 C -0.578 4.578 19 H 0.084 0.916 20 C -0.137 4.137 21 N -0.527 5.527 22 Si 0.734 3.266 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.205 1.205 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.193 0.807 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.324 16.972 2.375 17.945 hybrid contribution -0.385 0.152 -1.002 1.084 sum 4.939 17.124 1.373 17.875 Atomic orbital electron populations 1.20603 0.86860 1.04793 1.03232 1.21457 0.94933 0.86489 0.94482 1.19616 0.93160 0.92199 1.29158 1.16840 0.83677 0.82787 0.74046 1.90676 1.16069 1.84016 1.52552 1.49584 1.06878 1.06015 1.75205 1.22429 0.81950 0.97239 0.96756 0.89252 1.22039 1.00897 1.03148 0.95704 1.23548 0.97165 0.97161 1.00862 1.22526 0.94792 0.80895 0.98778 0.89510 1.21956 0.99589 1.00063 0.99869 1.23981 0.96642 0.92478 1.00212 1.77133 0.98642 1.12312 1.23670 1.49361 1.02499 1.08245 1.49002 1.19849 0.96401 0.70953 0.99429 1.21300 1.47317 0.98140 0.91048 0.91617 1.24925 0.94458 0.95983 0.98294 1.69924 1.44567 1.07138 1.31054 0.86273 0.77972 0.78839 0.83469 1.19535 1.20556 1.20528 0.90549 0.88691 0.89913 0.92013 0.90950 0.91299 0.89489 0.88782 0.92339 0.91967 0.90872 0.80661 0.92586 0.92512 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 9.34 36.01 0.34 -1.49 16 2 C 0.16 3.48 7.01 -81.60 -0.57 2.91 16 3 C -0.33 -6.37 6.13 -105.07 -0.64 -7.01 16 4 C 0.63 11.43 7.97 -12.52 -0.10 11.33 16 5 O -0.55 -11.19 14.42 5.28 0.08 -11.11 16 6 N -0.64 -8.83 3.37 -171.11 -0.58 -9.41 16 7 C 0.12 1.21 3.44 -72.52 -0.25 0.96 16 8 H 0.09 0.89 6.17 -51.93 -0.32 0.57 16 9 C -0.16 -1.40 9.71 37.15 0.36 -1.04 16 10 C -0.15 -1.17 7.57 -26.36 -0.20 -1.37 16 11 C 0.13 1.40 4.31 -72.40 -0.31 1.08 16 12 H 0.09 0.83 7.37 -51.93 -0.38 0.44 16 13 C -0.16 -1.67 9.56 37.16 0.36 -1.31 16 14 C 0.05 0.99 11.13 -16.98 -0.19 0.80 16 15 N -0.30 -6.62 12.50 30.86 0.39 -6.23 16 16 N -0.31 -7.31 3.56 -57.77 -0.21 -7.52 16 17 C 0.25 6.35 5.78 -5.19 -0.03 6.32 16 18 C -0.54 -14.71 9.39 -34.44 -0.32 -15.04 16 19 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 20 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 21 N -0.89 -24.75 13.29 55.43 0.74 -24.02 16 22 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.09 1.77 6.50 -51.93 -0.34 1.43 16 28 H 0.08 1.60 7.70 -51.93 -0.40 1.20 16 29 H 0.06 0.50 7.09 -51.93 -0.37 0.13 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.48 8.11 -51.93 -0.42 0.06 16 33 H 0.09 0.73 8.01 -51.93 -0.42 0.31 16 34 H 0.06 0.64 7.98 -51.93 -0.41 0.22 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.97 7.28 -51.93 -0.38 0.59 16 37 H 0.18 2.53 5.17 -52.48 -0.27 2.26 16 38 H 0.06 1.41 7.62 -51.93 -0.40 1.01 16 39 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 LS Contribution 330.63 15.07 4.98 4.98 Total: -1.00 -31.43 330.63 -7.05 -38.48 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.76 Total: 1.01 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -1.66 Total: -2.13 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.34 Total: -47.18 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.11 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.43 -7.05 -38.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897614383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.307 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds