Wall clock time and date at job start Mon Mar 30 2020 02:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38048 * 126.28906 * 2 1 4 4 C 1.47426 * 126.41549 * 359.97438 * 3 2 1 5 5 O 1.21603 * 120.00069 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00180 * 179.97438 * 4 3 2 7 7 C 1.47079 * 136.05421 * 359.63584 * 6 4 3 8 8 H 1.08998 * 113.46683 * 321.93281 * 7 6 4 9 9 C 1.52994 * 113.46359 * 92.37525 * 7 6 4 10 10 C 1.53239 * 88.07999 * 207.20087 * 7 6 4 11 11 C 1.47063 * 136.06201 * 180.02562 * 6 4 3 12 12 H 1.08997 * 113.47034 * 267.62666 * 11 6 4 13 13 C 1.53001 * 113.46791 * 38.00967 * 11 6 4 14 14 C 1.41287 * 107.16717 * 180.02562 * 3 2 1 15 15 N 1.30447 * 108.02773 * 359.74252 * 14 3 2 16 16 N 1.34260 * 126.29250 * 180.02562 * 2 1 3 17 17 C 1.46499 * 125.75214 * 359.95666 * 16 2 1 18 18 C 1.50701 * 109.46992 * 89.99999 * 17 16 2 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47432 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46890 * 120.00210 * 22 20 18 25 25 H 1.48501 * 109.47062 * 240.00257 * 22 20 18 26 26 H 1.08998 * 109.47130 * 270.00000 * 1 2 3 27 27 H 1.08995 * 109.47112 * 30.00351 * 1 2 3 28 28 H 1.09004 * 109.46886 * 150.00247 * 1 2 3 29 29 H 1.08993 * 109.47796 * 59.99985 * 9 7 6 30 30 H 1.09005 * 109.46786 * 180.02562 * 9 7 6 31 31 H 1.09007 * 109.47037 * 299.99543 * 9 7 6 32 32 H 1.09001 * 114.32410 * 220.46789 * 10 7 6 33 33 H 1.08994 * 114.01741 * 87.71635 * 10 7 6 34 34 H 1.09003 * 109.47273 * 59.99929 * 13 11 6 35 35 H 1.08996 * 109.47231 * 179.97438 * 13 11 6 36 36 H 1.09003 * 109.46991 * 300.00509 * 13 11 6 37 37 H 1.08004 * 125.98679 * 179.97438 * 14 3 2 38 38 H 1.09002 * 109.47391 * 329.99990 * 17 16 2 39 39 H 1.09001 * 109.46813 * 210.00046 * 17 16 2 40 40 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6995 2.7878 -0.0006 6 7 2.7998 3.5108 0.0001 7 6 4.2681 3.5968 0.0077 8 1 4.7440 2.8391 0.6301 9 6 4.8804 3.6842 -1.3916 10 6 4.1334 4.9567 0.7010 11 6 2.7681 4.9810 0.0003 12 1 2.8006 5.4161 -0.9986 13 6 1.6490 5.5662 0.8641 14 6 3.6590 0.6499 -0.0006 15 7 3.6341 -0.6543 0.0046 16 7 2.3017 -1.0821 -0.0005 17 6 1.8501 -2.4758 -0.0002 18 6 1.6944 -2.9536 -1.4210 19 1 1.9106 -2.2861 -2.2420 20 6 1.2768 -4.2434 -1.6726 21 7 1.0140 -5.0563 -0.6729 22 14 1.0845 -4.8358 -3.4337 23 1 1.4405 -3.7372 -4.3673 24 1 1.9840 -5.9942 -3.6672 25 1 -0.3232 -5.2473 -3.6666 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 4.5039 4.5727 -1.8982 30 1 5.9658 3.7445 -1.3101 31 1 4.6082 2.7970 -1.9635 32 1 4.8323 5.7134 0.3448 33 1 4.0766 4.8968 1.7878 34 1 1.7798 5.2422 1.8966 35 1 1.6857 6.6546 0.8179 36 1 0.6846 5.2187 0.4937 37 1 4.5449 1.2677 -0.0012 38 1 0.8918 -2.5471 0.5142 39 1 2.5851 -3.0957 0.5132 40 1 0.7199 -5.9635 -0.8500 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897614383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:35 Heat of formation + Delta-G solvation = 44.108499 kcal Electronic energy + Delta-G solvation = -21749.552047 eV Core-core repulsion = 18566.139144 eV Total energy + Delta-G solvation = -3183.412902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.42392 -41.31190 -38.71406 -35.84496 -33.95382 -32.87194 -32.05646 -31.41256 -29.09755 -28.22188 -27.76274 -25.44418 -23.86287 -23.34410 -21.95615 -20.69212 -19.24830 -18.86730 -17.82274 -17.14244 -16.88496 -16.58670 -16.39795 -15.90715 -15.41324 -14.94205 -14.65361 -14.36548 -14.24752 -14.07287 -13.80110 -13.68818 -13.59898 -13.28648 -13.12749 -12.99227 -12.80257 -12.74198 -12.59382 -12.49376 -12.34339 -12.10126 -11.85904 -11.70381 -11.10992 -10.78448 -10.61725 -10.29484 -9.78520 -9.36260 -8.40080 -6.56798 0.65146 1.27565 1.34893 1.36809 1.47967 1.60453 2.01719 2.30908 2.52786 2.91827 3.42922 3.54875 3.70450 3.94443 4.05988 4.14476 4.16120 4.26355 4.32848 4.37472 4.49388 4.61136 4.63333 4.76617 4.86703 4.90324 4.95829 4.99015 5.06746 5.09289 5.10519 5.19202 5.25781 5.41432 5.46762 5.51295 5.66159 5.72187 6.01650 6.52322 6.77358 6.85080 7.14519 7.33720 8.68126 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029047 B = 0.004222 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.732699 B = 6630.475518 C = 6923.236082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.143 3.857 3 C -0.327 4.327 4 C 0.625 3.375 5 O -0.586 6.586 6 N -0.646 5.646 7 C 0.110 3.890 8 H 0.092 0.908 9 C -0.156 4.156 10 C -0.123 4.123 11 C 0.123 3.877 12 H 0.102 0.898 13 C -0.154 4.154 14 C 0.074 3.926 15 N -0.334 5.334 16 N -0.337 5.337 17 C 0.267 3.733 18 C -0.557 4.557 19 H 0.050 0.950 20 C 0.025 3.975 21 N -0.916 5.916 22 Si 0.973 3.027 23 H -0.274 1.274 24 H -0.271 1.271 25 H -0.268 1.268 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.043 0.957 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.039 0.961 37 H 0.217 0.783 38 H 0.050 0.950 39 H 0.033 0.967 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.053 20.746 1.712 21.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.007 3.993 3 C -0.342 4.342 4 C 0.418 3.582 5 O -0.468 6.468 6 N -0.380 5.380 7 C 0.007 3.993 8 H 0.109 0.891 9 C -0.214 4.214 10 C -0.161 4.161 11 C 0.021 3.979 12 H 0.120 0.880 13 C -0.211 4.211 14 C -0.112 4.112 15 N -0.154 5.154 16 N -0.114 5.114 17 C 0.149 3.851 18 C -0.595 4.595 19 H 0.068 0.932 20 C -0.177 4.177 21 N -0.554 5.554 22 Si 0.796 3.204 23 H -0.199 1.199 24 H -0.197 1.197 25 H -0.192 1.192 26 H 0.109 0.891 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.062 0.938 32 H 0.143 0.857 33 H 0.116 0.884 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.233 0.767 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.904 19.272 1.779 20.549 hybrid contribution -0.795 -0.382 -0.771 1.171 sum 6.109 18.890 1.008 19.879 Atomic orbital electron populations 1.20560 0.85814 1.04166 1.04025 1.21955 0.95968 0.86652 0.94704 1.19971 0.93301 0.93037 1.27904 1.16684 0.83966 0.82973 0.74585 1.90650 1.17481 1.84437 1.54225 1.49769 1.08329 1.06968 1.72965 1.22802 0.79515 0.98849 0.98094 0.89059 1.22039 1.02599 1.02437 0.94298 1.23486 0.95551 0.96271 1.00764 1.22921 0.96347 0.78538 1.00077 0.87998 1.21925 0.97982 1.01954 0.99269 1.24590 0.97661 0.91506 0.97441 1.77078 0.98427 1.14204 1.25715 1.49123 1.03294 1.07760 1.51220 1.19389 0.95292 0.72209 0.98236 1.21409 1.48077 0.98533 0.91457 0.93176 1.25730 0.93730 0.95846 1.02355 1.70001 1.44749 1.07615 1.33000 0.85285 0.78533 0.78178 0.78359 1.19852 1.19664 1.19249 0.89074 0.88546 0.91005 0.90970 0.88174 0.93808 0.85736 0.88391 0.92967 0.88977 0.94158 0.76698 0.93181 0.94920 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.42 9.34 71.24 0.67 -2.76 16 2 C 0.14 6.26 7.01 42.14 0.30 6.55 16 3 C -0.33 -12.81 6.13 -20.15 -0.12 -12.94 16 4 C 0.63 22.42 7.97 86.66 0.69 23.11 16 5 O -0.59 -23.99 14.42 -4.04 -0.06 -24.05 16 6 N -0.65 -16.62 3.37 -813.51 -2.75 -19.36 16 7 C 0.11 1.84 3.44 41.70 0.14 1.98 16 8 H 0.09 1.50 6.17 -2.39 -0.01 1.48 16 9 C -0.16 -2.18 9.71 71.98 0.70 -1.48 16 10 C -0.12 -1.38 7.57 30.83 0.23 -1.15 16 11 C 0.12 2.22 4.31 41.79 0.18 2.40 16 12 H 0.10 1.58 7.37 -2.39 -0.02 1.56 16 13 C -0.15 -2.97 9.56 71.98 0.69 -2.29 16 14 C 0.07 2.71 11.13 85.65 0.95 3.67 16 15 N -0.33 -15.11 12.50 -56.27 -0.70 -15.82 16 16 N -0.34 -16.25 3.56 -336.69 -1.20 -17.45 16 17 C 0.27 14.17 5.78 85.63 0.50 14.67 16 18 C -0.56 -31.32 9.39 25.60 0.24 -31.08 16 19 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 20 C 0.02 1.36 5.46 84.66 0.46 1.82 16 21 N -0.92 -51.70 13.29 21.45 0.28 -51.42 16 22 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 26 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 27 H 0.10 3.72 6.50 -2.39 -0.02 3.70 16 28 H 0.07 2.91 7.70 -2.39 -0.02 2.90 16 29 H 0.07 0.87 7.09 -2.39 -0.02 0.85 16 30 H 0.10 0.87 8.14 -2.38 -0.02 0.86 16 31 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.12 0.59 8.11 -2.39 -0.02 0.57 16 33 H 0.10 1.10 8.01 -2.39 -0.02 1.08 16 34 H 0.05 1.06 7.98 -2.39 -0.02 1.04 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.04 1.05 7.28 -2.39 -0.02 1.04 16 37 H 0.22 5.75 5.17 -2.91 -0.02 5.73 16 38 H 0.05 2.66 7.62 -2.39 -0.02 2.64 16 39 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -70.63 330.63 4.27 -66.36 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 1.04 Total: 14.00 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 5.62 Total: 2.52 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -4.36 Total: -104.05 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.06 Total: -24.05 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -70.63 4.27 -66.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897614383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.467 kcal (2) G-P(sol) polarization free energy of solvation -70.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds