Wall clock time and date at job start Mon Mar 30 2020 02:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38046 * 126.28663 * 2 1 4 4 C 1.47421 * 126.42057 * 0.02562 * 3 2 1 5 5 O 1.21604 * 120.00030 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00277 * 180.02562 * 4 3 2 7 7 C 1.47073 * 136.05810 * 0.02562 * 6 4 3 8 8 C 1.53497 * 87.98447 * 207.08083 * 7 6 4 9 9 H 1.09003 * 114.20585 * 87.51561 * 8 7 6 10 10 C 1.52998 * 114.20688 * 220.33757 * 8 7 6 11 11 C 1.47070 * 136.06099 * 179.62748 * 6 4 3 12 12 H 1.09007 * 113.46665 * 38.13118 * 11 6 4 13 13 C 1.53000 * 113.46705 * 267.69709 * 11 6 4 14 14 C 1.41292 * 107.16447 * 180.02562 * 3 2 1 15 15 N 1.30448 * 108.02825 * 359.71642 * 14 3 2 16 16 N 1.34260 * 126.29245 * 180.02562 * 2 1 3 17 17 C 1.46499 * 125.75214 * 359.97438 * 16 2 1 18 18 C 1.50701 * 109.46992 * 89.99999 * 17 16 2 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99594 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99875 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47061 * 90.00257 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99430 * 22 20 18 25 25 H 1.48498 * 109.47403 * 329.99876 * 22 20 18 26 26 H 1.09004 * 109.46840 * 269.97395 * 1 2 3 27 27 H 1.09002 * 109.47345 * 29.97188 * 1 2 3 28 28 H 1.08994 * 109.47127 * 149.97453 * 1 2 3 29 29 H 1.09001 * 113.46328 * 321.86216 * 7 6 4 30 30 H 1.08994 * 113.46962 * 92.30487 * 7 6 4 31 31 H 1.08998 * 109.46865 * 40.50193 * 10 8 7 32 32 H 1.09001 * 109.47153 * 160.49722 * 10 8 7 33 33 H 1.09001 * 109.47566 * 280.49795 * 10 8 7 34 34 H 1.09004 * 109.47322 * 79.50257 * 13 11 6 35 35 H 1.09003 * 109.47203 * 199.49690 * 13 11 6 36 36 H 1.08999 * 109.47161 * 319.49995 * 13 11 6 37 37 H 1.08007 * 125.98507 * 179.97438 * 14 3 2 38 38 H 1.09002 * 109.47391 * 329.99990 * 17 16 2 39 39 H 1.09001 * 109.46813 * 210.00046 * 17 16 2 40 40 H 0.97002 * 119.99739 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6995 2.7878 0.0006 6 7 2.7998 3.5107 -0.0001 7 6 4.2680 3.5967 -0.0017 8 6 4.1350 4.9568 0.6974 9 1 4.0808 4.8971 1.7845 10 6 5.1150 6.0189 0.1950 11 6 2.7681 4.9810 -0.0065 12 1 1.9700 5.4007 0.6060 13 6 2.8170 5.5854 -1.4112 14 6 3.6590 0.6499 -0.0006 15 7 3.6341 -0.6543 0.0052 16 7 2.3017 -1.0821 -0.0005 17 6 1.8501 -2.4758 -0.0006 18 6 1.6947 -2.9534 -1.4214 19 1 1.9112 -2.2857 -2.2423 20 6 1.2772 -4.2430 -1.6735 21 7 1.1422 -4.6599 -2.9134 22 14 0.9036 -5.3980 -0.2537 23 1 -0.5275 -5.2730 0.1226 24 1 1.1866 -6.7964 -0.6656 25 1 1.7544 -5.0430 0.9104 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 4.7480 2.8368 0.6150 30 1 4.6979 3.6627 -1.0011 31 1 5.2026 5.9485 -0.8891 32 1 4.7483 7.0089 0.4663 33 1 6.0921 5.8561 0.6499 34 1 1.8263 5.5350 -1.8631 35 1 3.1350 6.6261 -1.3482 36 1 3.5244 5.0257 -2.0231 37 1 4.5449 1.2677 -0.0012 38 1 0.8916 -2.5472 0.5136 39 1 2.5849 -3.0958 0.5129 40 1 0.8481 -5.5671 -3.0908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897852189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:21 Heat of formation + Delta-G solvation = 70.674995 kcal Electronic energy + Delta-G solvation = -21532.887350 eV Core-core repulsion = 18350.626457 eV Total energy + Delta-G solvation = -3182.260893 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.04999 -40.28658 -37.54637 -33.92389 -32.35792 -31.77363 -31.18930 -29.79993 -28.06357 -27.12465 -26.07579 -24.40224 -22.94382 -21.84366 -20.15024 -18.98598 -18.13924 -17.21811 -16.89268 -16.24457 -15.57922 -15.19822 -14.91178 -14.47665 -14.12065 -14.06878 -13.43247 -13.08422 -12.91362 -12.71140 -12.59032 -12.49419 -12.35271 -12.24099 -12.15851 -11.85552 -11.62407 -11.53238 -11.28739 -11.20293 -10.84625 -10.39694 -10.26429 -10.18580 -9.79544 -9.37272 -8.85269 -8.66954 -8.59337 -7.93623 -6.33063 -4.37855 2.13687 2.72386 2.89858 3.10307 3.17494 3.18815 3.33544 3.86964 4.03270 4.15682 4.61213 4.74096 4.90647 4.97348 5.05030 5.07452 5.15642 5.21576 5.30654 5.37148 5.47920 5.58032 5.59922 5.66486 5.72656 5.81472 5.84689 5.91353 6.02966 6.14047 6.19512 6.30257 6.49654 6.53866 6.61356 7.05167 7.18459 7.57796 7.94081 8.20117 8.28307 8.59143 8.70487 9.20807 10.79164 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035546 B = 0.003896 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.531115 B = 7184.741605 C = 7405.926991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.168 3.832 3 C -0.323 4.323 4 C 0.632 3.368 5 O -0.553 6.553 6 N -0.644 5.644 7 C 0.099 3.901 8 C -0.126 4.126 9 H 0.103 0.897 10 C -0.141 4.141 11 C 0.134 3.866 12 H 0.083 0.917 13 C -0.155 4.155 14 C 0.057 3.943 15 N -0.294 5.294 16 N -0.314 5.314 17 C 0.225 3.775 18 C -0.546 4.546 19 H 0.082 0.918 20 C 0.081 3.919 21 N -0.883 5.883 22 Si 0.873 3.127 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.263 1.263 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.179 0.821 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.815 18.570 7.416 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.031 3.969 3 C -0.338 4.338 4 C 0.426 3.574 5 O -0.433 6.433 6 N -0.379 5.379 7 C -0.024 4.024 8 C -0.145 4.145 9 H 0.121 0.879 10 C -0.199 4.199 11 C 0.030 3.970 12 H 0.101 0.899 13 C -0.213 4.213 14 C -0.130 4.130 15 N -0.114 5.114 16 N -0.090 5.090 17 C 0.106 3.894 18 C -0.584 4.584 19 H 0.100 0.900 20 C -0.124 4.124 21 N -0.519 5.519 22 Si 0.699 3.301 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.188 1.188 26 H 0.095 0.905 27 H 0.116 0.884 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.196 0.804 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.632 17.063 7.297 19.393 hybrid contribution -0.521 -0.146 0.419 0.684 sum 5.111 16.916 7.715 19.282 Atomic orbital electron populations 1.20643 0.86738 1.05156 1.03219 1.21450 0.94950 0.86341 0.94165 1.19593 0.93173 0.92168 1.28899 1.16819 0.83687 0.82764 0.74102 1.90696 1.16072 1.83978 1.52513 1.49395 1.07208 1.06157 1.75134 1.23188 0.82141 0.96583 1.00522 1.23064 0.95475 0.95504 1.00484 0.87891 1.21691 0.98566 0.98068 1.01569 1.22449 0.97156 0.80850 0.96507 0.89864 1.22008 1.02867 1.00805 0.95667 1.24017 0.96702 0.92410 0.99837 1.77143 0.98094 1.12420 1.23708 1.48899 1.02775 1.07482 1.49857 1.20149 0.95721 0.73336 1.00195 1.21103 1.48073 0.99210 0.90028 0.90034 1.24796 0.94287 0.97396 0.95887 1.69866 1.45124 1.18246 1.18674 0.86897 0.79538 0.81013 0.82694 1.19480 1.20354 1.18778 0.90472 0.88444 0.89772 0.90166 0.89767 0.91880 0.92047 0.92066 0.91912 0.90961 0.91880 0.80388 0.93423 0.92697 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 9.34 36.01 0.34 -1.49 16 2 C 0.17 3.49 7.01 -81.60 -0.57 2.92 16 3 C -0.32 -6.23 6.13 -105.07 -0.64 -6.87 16 4 C 0.63 11.43 8.06 -12.52 -0.10 11.33 16 5 O -0.55 -11.36 15.61 5.27 0.08 -11.27 16 6 N -0.64 -8.84 3.49 -178.50 -0.62 -9.47 16 7 C 0.10 0.96 6.32 -8.51 -0.05 0.91 16 8 C -0.13 -0.98 4.69 -89.96 -0.42 -1.41 16 9 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 10 C -0.14 -0.78 8.77 37.16 0.33 -0.45 16 11 C 0.13 1.40 4.89 -72.25 -0.35 1.05 16 12 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 13 C -0.16 -1.39 8.48 37.16 0.32 -1.08 16 14 C 0.06 1.04 11.14 -16.98 -0.19 0.85 16 15 N -0.29 -6.40 12.50 30.86 0.39 -6.02 16 16 N -0.31 -7.11 3.56 -57.77 -0.21 -7.32 16 17 C 0.22 5.31 4.85 -5.19 -0.03 5.29 16 18 C -0.55 -15.12 9.94 -34.44 -0.34 -15.46 16 19 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 20 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 21 N -0.88 -25.99 13.96 55.43 0.77 -25.21 16 22 Si 0.87 19.88 27.47 -169.99 -4.67 15.21 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.10 1.80 6.50 -51.93 -0.34 1.47 16 28 H 0.08 1.58 7.70 -51.93 -0.40 1.18 16 29 H 0.08 0.74 6.14 -51.93 -0.32 0.42 16 30 H 0.08 0.73 7.16 -51.93 -0.37 0.36 16 31 H 0.06 0.34 6.79 -51.93 -0.35 -0.02 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.47 7.47 -51.93 -0.39 0.08 16 36 H 0.06 0.56 6.80 -51.93 -0.35 0.21 16 37 H 0.18 2.46 5.21 -52.48 -0.27 2.19 16 38 H 0.05 1.04 7.05 -51.93 -0.37 0.67 16 39 H 0.06 1.30 7.20 -51.93 -0.37 0.92 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 325.68 15.07 4.91 4.91 Total: -1.00 -33.09 325.68 -6.83 -39.92 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.66 Total: 1.51 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.82 Total: -2.26 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.33 Total: -48.01 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.67 Total: 15.21 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.09 -6.83 -39.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897852189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.595 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds