Wall clock time and date at job start Mon Mar 30 2020 02:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38046 * 126.28663 * 2 1 4 4 C 1.47421 * 126.42057 * 0.02562 * 3 2 1 5 5 O 1.21604 * 120.00030 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00277 * 180.02562 * 4 3 2 7 7 C 1.47073 * 136.05810 * 0.02562 * 6 4 3 8 8 C 1.53497 * 87.98447 * 207.08083 * 7 6 4 9 9 H 1.09003 * 114.20585 * 87.51561 * 8 7 6 10 10 C 1.52998 * 114.20688 * 220.33757 * 8 7 6 11 11 C 1.47070 * 136.06099 * 179.62748 * 6 4 3 12 12 H 1.09007 * 113.46665 * 38.13118 * 11 6 4 13 13 C 1.53000 * 113.46705 * 267.69709 * 11 6 4 14 14 C 1.41292 * 107.16447 * 180.02562 * 3 2 1 15 15 N 1.30448 * 108.02825 * 359.71642 * 14 3 2 16 16 N 1.34260 * 126.29245 * 180.02562 * 2 1 3 17 17 C 1.46499 * 125.75214 * 359.97438 * 16 2 1 18 18 C 1.50701 * 109.46992 * 89.99999 * 17 16 2 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99594 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99875 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47061 * 90.00257 * 22 20 18 24 24 H 1.48497 * 109.46906 * 209.99430 * 22 20 18 25 25 H 1.48498 * 109.47403 * 329.99876 * 22 20 18 26 26 H 1.09004 * 109.46840 * 269.97395 * 1 2 3 27 27 H 1.09002 * 109.47345 * 29.97188 * 1 2 3 28 28 H 1.08994 * 109.47127 * 149.97453 * 1 2 3 29 29 H 1.09001 * 113.46328 * 321.86216 * 7 6 4 30 30 H 1.08994 * 113.46962 * 92.30487 * 7 6 4 31 31 H 1.08998 * 109.46865 * 40.50193 * 10 8 7 32 32 H 1.09001 * 109.47153 * 160.49722 * 10 8 7 33 33 H 1.09001 * 109.47566 * 280.49795 * 10 8 7 34 34 H 1.09004 * 109.47322 * 79.50257 * 13 11 6 35 35 H 1.09003 * 109.47203 * 199.49690 * 13 11 6 36 36 H 1.08999 * 109.47161 * 319.49995 * 13 11 6 37 37 H 1.08007 * 125.98507 * 179.97438 * 14 3 2 38 38 H 1.09002 * 109.47391 * 329.99990 * 17 16 2 39 39 H 1.09001 * 109.46813 * 210.00046 * 17 16 2 40 40 H 0.97002 * 119.99739 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6995 2.7878 0.0006 6 7 2.7998 3.5107 -0.0001 7 6 4.2680 3.5967 -0.0017 8 6 4.1350 4.9568 0.6974 9 1 4.0808 4.8971 1.7845 10 6 5.1150 6.0189 0.1950 11 6 2.7681 4.9810 -0.0065 12 1 1.9700 5.4007 0.6060 13 6 2.8170 5.5854 -1.4112 14 6 3.6590 0.6499 -0.0006 15 7 3.6341 -0.6543 0.0052 16 7 2.3017 -1.0821 -0.0005 17 6 1.8501 -2.4758 -0.0006 18 6 1.6947 -2.9534 -1.4214 19 1 1.9112 -2.2857 -2.2423 20 6 1.2772 -4.2430 -1.6735 21 7 1.1422 -4.6599 -2.9134 22 14 0.9036 -5.3980 -0.2537 23 1 -0.5275 -5.2730 0.1226 24 1 1.1866 -6.7964 -0.6656 25 1 1.7544 -5.0430 0.9104 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 4.7480 2.8368 0.6150 30 1 4.6979 3.6627 -1.0011 31 1 5.2026 5.9485 -0.8891 32 1 4.7483 7.0089 0.4663 33 1 6.0921 5.8561 0.6499 34 1 1.8263 5.5350 -1.8631 35 1 3.1350 6.6261 -1.3482 36 1 3.5244 5.0257 -2.0231 37 1 4.5449 1.2677 -0.0012 38 1 0.8916 -2.5472 0.5136 39 1 2.5849 -3.0958 0.5129 40 1 0.8481 -5.5671 -3.0908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897852189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:20 Heat of formation + Delta-G solvation = 48.316015 kcal Electronic energy + Delta-G solvation = -21533.856908 eV Core-core repulsion = 18350.626457 eV Total energy + Delta-G solvation = -3183.230451 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.45991 -41.38096 -38.87092 -35.80909 -34.12116 -32.99386 -32.62023 -30.56930 -29.68517 -28.54198 -27.17356 -25.47048 -24.59442 -23.19618 -21.42067 -20.40908 -19.30641 -19.22596 -18.15050 -17.33019 -16.78990 -16.60302 -16.49902 -15.88028 -15.47366 -15.38072 -14.82078 -14.47837 -14.20232 -14.05810 -13.93241 -13.73184 -13.67031 -13.30100 -13.15624 -13.04784 -12.86739 -12.67038 -12.58331 -12.35514 -12.17215 -11.93477 -11.87052 -11.73002 -11.01284 -10.93736 -10.75082 -10.31056 -9.83068 -9.39689 -8.45123 -6.57734 0.59422 1.23318 1.32676 1.34072 1.44140 1.55646 1.98140 2.23222 2.47538 2.86935 3.29736 3.52512 3.66569 3.93035 4.05203 4.07753 4.10643 4.26281 4.32209 4.40722 4.45667 4.55241 4.60448 4.61880 4.69727 4.79643 4.96513 4.99177 5.01855 5.03721 5.11715 5.15056 5.18907 5.28887 5.35377 5.57920 5.61656 5.79474 6.17654 6.45091 6.70507 6.78435 7.06261 7.25809 8.71438 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035546 B = 0.003896 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.531115 B = 7184.741605 C = 7405.926991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.147 3.853 3 C -0.327 4.327 4 C 0.625 3.375 5 O -0.590 6.590 6 N -0.648 5.648 7 C 0.089 3.911 8 C -0.102 4.102 9 H 0.108 0.892 10 C -0.137 4.137 11 C 0.123 3.877 12 H 0.073 0.927 13 C -0.150 4.150 14 C 0.076 3.924 15 N -0.331 5.331 16 N -0.336 5.336 17 C 0.234 3.766 18 C -0.556 4.556 19 H 0.025 0.975 20 C 0.024 3.976 21 N -0.934 5.934 22 Si 0.951 3.049 23 H -0.252 1.252 24 H -0.276 1.276 25 H -0.242 1.242 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.221 0.779 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.120 19.959 9.451 23.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.012 3.988 3 C -0.342 4.342 4 C 0.418 3.582 5 O -0.472 6.472 6 N -0.382 5.382 7 C -0.033 4.033 8 C -0.121 4.121 9 H 0.126 0.874 10 C -0.195 4.195 11 C 0.020 3.980 12 H 0.092 0.908 13 C -0.208 4.208 14 C -0.110 4.110 15 N -0.150 5.150 16 N -0.113 5.113 17 C 0.114 3.886 18 C -0.594 4.594 19 H 0.043 0.957 20 C -0.177 4.177 21 N -0.572 5.572 22 Si 0.771 3.229 23 H -0.176 1.176 24 H -0.201 1.201 25 H -0.166 1.166 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.237 0.763 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.984 18.516 9.336 21.881 hybrid contribution -0.844 -0.368 -0.307 0.971 sum 6.140 18.148 9.029 21.179 Atomic orbital electron populations 1.20623 0.85612 1.04282 1.04490 1.21966 0.96040 0.86584 0.94227 1.19929 0.93497 0.92842 1.27976 1.16717 0.83898 0.83078 0.74530 1.90663 1.17624 1.84485 1.54433 1.49547 1.08719 1.07024 1.72913 1.23558 0.79570 0.98107 1.02027 1.22966 0.93849 0.94885 1.00394 0.87420 1.21697 0.98326 0.97522 1.01922 1.22812 0.98703 0.78669 0.97782 0.90833 1.21991 1.01820 1.02581 0.94404 1.24659 0.97699 0.91546 0.97143 1.77081 0.98081 1.14218 1.25633 1.48782 1.03418 1.07312 1.51818 1.19919 0.96847 0.74357 0.97458 1.21182 1.48394 0.98917 0.90877 0.95706 1.25833 0.93534 0.99182 0.99131 1.70025 1.46469 1.19126 1.21606 0.85680 0.80469 0.77780 0.78948 1.17613 1.20121 1.16556 0.88092 0.88937 0.90792 0.89327 0.88110 0.91389 0.90941 0.90788 0.94036 0.87935 0.91627 0.76298 0.91113 0.92376 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.44 9.34 71.24 0.67 -2.77 16 2 C 0.15 6.22 7.01 42.14 0.30 6.52 16 3 C -0.33 -12.57 6.13 -20.15 -0.12 -12.70 16 4 C 0.62 22.47 8.06 86.66 0.70 23.17 16 5 O -0.59 -24.58 15.61 -4.04 -0.06 -24.64 16 6 N -0.65 -16.90 3.49 -836.92 -2.92 -19.82 16 7 C 0.09 1.47 6.32 83.18 0.53 2.00 16 8 C -0.10 -1.26 4.69 -10.37 -0.05 -1.30 16 9 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 10 C -0.14 -0.94 8.77 71.98 0.63 -0.30 16 11 C 0.12 2.34 4.89 41.88 0.20 2.55 16 12 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 13 C -0.15 -2.39 8.48 71.98 0.61 -1.78 16 14 C 0.08 2.69 11.14 85.65 0.95 3.65 16 15 N -0.33 -14.39 12.50 -56.27 -0.70 -15.09 16 16 N -0.34 -15.43 3.56 -336.69 -1.20 -16.63 16 17 C 0.23 11.08 4.85 85.63 0.42 11.50 16 18 C -0.56 -31.88 9.94 25.60 0.25 -31.62 16 19 H 0.02 1.65 8.06 -2.91 -0.02 1.63 16 20 C 0.02 1.32 5.47 84.66 0.46 1.78 16 21 N -0.93 -56.81 13.96 21.45 0.30 -56.51 16 22 Si 0.95 40.63 27.47 68.60 1.88 42.52 16 23 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 24 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 25 H -0.24 -9.48 6.54 99.48 0.65 -8.83 16 26 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 27 H 0.09 3.54 6.50 -2.39 -0.02 3.52 16 28 H 0.07 2.86 7.70 -2.39 -0.02 2.85 16 29 H 0.09 1.33 6.14 -2.39 -0.01 1.31 16 30 H 0.10 1.39 7.16 -2.39 -0.02 1.37 16 31 H 0.07 0.44 6.79 -2.39 -0.02 0.42 16 32 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.10 1.00 7.47 -2.39 -0.02 0.99 16 36 H 0.06 1.02 6.80 -2.39 -0.02 1.00 16 37 H 0.22 5.49 5.21 -2.91 -0.02 5.48 16 38 H 0.07 3.00 7.05 -2.39 -0.02 2.99 16 39 H 0.06 2.70 7.20 -2.39 -0.02 2.68 16 40 H 0.27 15.37 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -76.08 325.68 3.83 -72.25 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.99 Total: 17.25 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 5.55 Total: 0.68 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -4.53 Total: -108.05 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.06 Total: -24.64 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 1.88 Total: 42.52 kcal Total: -76.08 3.83 -72.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897852189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.564 kcal (2) G-P(sol) polarization free energy of solvation -76.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds