Wall clock time and date at job start Mon Mar 30 2020 02:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38044 * 126.29067 * 2 1 4 4 C 1.47424 * 126.41867 * 0.02562 * 3 2 1 5 5 O 1.21609 * 119.99733 * 0.32682 * 4 3 2 6 6 N 1.34769 * 120.00018 * 180.32603 * 4 3 2 7 7 C 1.47061 * 136.06051 * 359.62597 * 6 4 3 8 8 C 1.53758 * 87.89238 * 152.96287 * 7 6 4 9 9 H 1.08991 * 114.39951 * 272.68547 * 8 7 6 10 10 C 1.53002 * 114.26740 * 139.78825 * 8 7 6 11 11 C 1.47072 * 136.05468 * 179.97438 * 6 4 3 12 12 H 1.08994 * 113.47224 * 321.86274 * 11 6 4 13 13 C 1.53002 * 113.46928 * 92.24706 * 11 6 4 14 14 C 1.41288 * 107.16579 * 180.26245 * 3 2 1 15 15 N 1.30449 * 108.02555 * 359.74100 * 14 3 2 16 16 N 1.34253 * 126.28759 * 179.82146 * 2 1 3 17 17 C 1.46506 * 125.75977 * 359.97438 * 16 2 1 18 18 C 1.50699 * 109.46892 * 269.72125 * 17 16 2 19 19 H 1.08002 * 120.00511 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99783 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99573 * 180.27665 * 20 18 17 22 22 Si 1.86800 * 119.99781 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 89.99934 * 22 20 18 24 24 H 1.48499 * 109.47026 * 209.99782 * 22 20 18 25 25 H 1.48496 * 109.47474 * 329.99818 * 22 20 18 26 26 H 1.08993 * 109.47202 * 270.20525 * 1 2 3 27 27 H 1.09003 * 109.47192 * 30.20349 * 1 2 3 28 28 H 1.08999 * 109.47185 * 150.20699 * 1 2 3 29 29 H 1.09003 * 113.47492 * 267.69894 * 7 6 4 30 30 H 1.09005 * 113.46964 * 38.13913 * 7 6 4 31 31 H 1.08999 * 109.47126 * 326.48540 * 10 8 7 32 32 H 1.09007 * 109.46790 * 86.48180 * 10 8 7 33 33 H 1.09002 * 109.47338 * 206.47849 * 10 8 7 34 34 H 1.09004 * 109.46899 * 40.49293 * 13 11 6 35 35 H 1.08997 * 109.47320 * 160.48944 * 13 11 6 36 36 H 1.08993 * 109.46897 * 280.49809 * 13 11 6 37 37 H 1.08003 * 125.99049 * 179.78428 * 14 3 2 38 38 H 1.08992 * 109.47369 * 149.72207 * 17 16 2 39 39 H 1.09005 * 109.46360 * 29.71821 * 17 16 2 40 40 H 0.97004 * 119.99485 * 179.72881 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5203 0.0005 5 8 0.6996 2.7878 0.0070 6 7 2.8000 3.5106 -0.0062 7 6 4.2681 3.5966 -0.0081 8 6 4.1309 4.9554 -0.7144 9 1 4.0699 4.8940 -1.8009 10 6 5.1122 6.0215 -0.2230 11 6 2.7683 4.9809 -0.0085 12 1 1.9694 5.3969 -0.6223 13 6 2.8178 5.5938 1.3925 14 6 3.6590 0.6498 -0.0062 15 7 3.6340 -0.6545 -0.0040 16 7 2.3016 -1.0822 0.0034 17 6 1.8500 -2.4759 0.0082 18 6 1.7023 -2.9510 1.4307 19 1 1.9231 -2.2820 2.2493 20 6 1.2852 -4.2400 1.6872 21 7 1.1510 -4.6529 2.9286 22 14 0.9026 -5.3969 0.2714 23 1 2.1329 -6.1357 -0.1104 24 1 -0.1447 -6.3627 0.6905 25 1 0.4155 -4.6122 -0.8914 26 1 -0.3633 0.0037 1.0276 27 1 -0.3634 0.8882 -0.5170 28 1 -0.3633 -0.8918 -0.5106 29 1 4.7002 3.6679 0.9900 30 1 4.7468 2.8333 -0.6217 31 1 5.3010 5.8787 0.8410 32 1 6.0492 5.9340 -0.7732 33 1 4.6858 7.0111 -0.3869 34 1 3.5254 5.0377 2.0075 35 1 3.1359 6.6339 1.3231 36 1 1.8274 5.5460 1.8451 37 1 4.5449 1.2675 -0.0111 38 1 2.5820 -3.0968 -0.5080 39 1 0.8887 -2.5480 -0.5007 40 1 0.8538 -5.5585 3.1090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897852191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:23 Heat of formation + Delta-G solvation = 70.840061 kcal Electronic energy + Delta-G solvation = -21531.395927 eV Core-core repulsion = 18349.142192 eV Total energy + Delta-G solvation = -3182.253735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.05162 -40.28739 -37.54470 -33.92217 -32.36281 -31.77688 -31.19069 -29.79761 -28.06192 -27.12467 -26.07907 -24.41206 -22.95529 -21.84493 -20.14872 -18.98242 -18.14432 -17.22284 -16.88903 -16.25665 -15.58399 -15.21190 -14.90165 -14.48031 -14.11095 -14.09199 -13.42302 -13.05645 -12.94087 -12.72340 -12.56443 -12.48244 -12.36348 -12.27300 -12.11861 -11.87061 -11.64362 -11.53889 -11.29502 -11.20887 -10.83739 -10.38503 -10.26464 -10.21365 -9.79273 -9.37842 -8.84855 -8.67889 -8.58868 -7.93280 -6.32826 -4.37422 2.13778 2.72805 2.89414 3.11513 3.16860 3.18079 3.32790 3.86845 4.03259 4.15639 4.60803 4.73699 4.91020 4.97763 5.05401 5.07001 5.15159 5.21884 5.30398 5.36277 5.47576 5.57393 5.59686 5.64296 5.73073 5.81405 5.84841 5.91684 6.02282 6.14972 6.19361 6.31557 6.46483 6.51624 6.61192 7.04978 7.18449 7.57387 7.93978 8.20324 8.28126 8.59052 8.70555 9.21032 10.79465 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035562 B = 0.003895 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.163386 B = 7186.325876 C = 7407.728551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.168 3.832 3 C -0.323 4.323 4 C 0.632 3.368 5 O -0.553 6.553 6 N -0.644 5.644 7 C 0.100 3.900 8 C -0.126 4.126 9 H 0.103 0.897 10 C -0.140 4.140 11 C 0.134 3.866 12 H 0.083 0.917 13 C -0.155 4.155 14 C 0.057 3.943 15 N -0.294 5.294 16 N -0.314 5.314 17 C 0.225 3.775 18 C -0.545 4.545 19 H 0.081 0.919 20 C 0.081 3.919 21 N -0.883 5.883 22 Si 0.874 3.126 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.264 1.264 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.180 0.820 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.773 18.608 -7.561 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.031 3.969 3 C -0.339 4.339 4 C 0.426 3.574 5 O -0.433 6.433 6 N -0.379 5.379 7 C -0.024 4.024 8 C -0.145 4.145 9 H 0.121 0.879 10 C -0.198 4.198 11 C 0.030 3.970 12 H 0.101 0.899 13 C -0.213 4.213 14 C -0.129 4.129 15 N -0.114 5.114 16 N -0.090 5.090 17 C 0.106 3.894 18 C -0.583 4.583 19 H 0.099 0.901 20 C -0.124 4.124 21 N -0.519 5.519 22 Si 0.700 3.300 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.189 1.189 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.196 0.804 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.585 17.103 -7.432 19.466 hybrid contribution -0.508 -0.169 -0.382 0.657 sum 5.077 16.934 -7.814 19.328 Atomic orbital electron populations 1.20589 0.86698 1.03637 1.04236 1.21443 0.94939 0.86358 0.94163 1.19583 0.93149 0.92151 1.28971 1.16819 0.83694 0.82759 0.74093 1.90699 1.16071 1.83994 1.52498 1.49386 1.07211 1.06143 1.75154 1.23253 0.82141 0.96559 1.00437 1.23058 0.95492 0.95519 1.00471 0.87906 1.21680 0.98521 0.98058 1.01531 1.22392 0.97193 0.80852 0.96526 0.89895 1.22000 1.02867 1.00762 0.95704 1.24018 0.96700 0.92415 0.99815 1.77146 0.98091 1.12432 1.23738 1.48894 1.02776 1.07502 1.49837 1.20160 0.95724 0.73304 1.00219 1.21094 1.48047 0.99197 0.89982 0.90051 1.24797 0.94286 0.97419 0.95878 1.69867 1.45158 1.18383 1.18541 0.86882 0.79098 0.81483 0.82518 1.19515 1.20387 1.18865 0.89477 0.88731 0.91061 0.89752 0.90152 0.91955 0.92110 0.92006 0.91900 0.90985 0.91919 0.80379 0.93157 0.92972 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 9.56 36.01 0.34 -1.38 16 2 C 0.17 3.50 7.01 -81.60 -0.57 2.92 16 3 C -0.32 -6.23 6.13 -105.07 -0.64 -6.87 16 4 C 0.63 11.42 8.06 -12.52 -0.10 11.32 16 5 O -0.55 -11.34 15.62 5.27 0.08 -11.26 16 6 N -0.64 -8.83 3.49 -178.51 -0.62 -9.45 16 7 C 0.10 0.97 6.35 -8.38 -0.05 0.91 16 8 C -0.13 -0.98 4.67 -89.97 -0.42 -1.40 16 9 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 10 C -0.14 -0.77 8.63 37.16 0.32 -0.45 16 11 C 0.13 1.40 4.87 -72.40 -0.35 1.05 16 12 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 13 C -0.16 -1.39 8.58 37.16 0.32 -1.07 16 14 C 0.06 1.04 11.14 -16.98 -0.19 0.85 16 15 N -0.29 -6.41 12.50 30.86 0.39 -6.02 16 16 N -0.31 -7.11 3.56 -57.77 -0.21 -7.32 16 17 C 0.22 5.32 5.04 -5.19 -0.03 5.29 16 18 C -0.55 -15.13 9.94 -34.44 -0.34 -15.47 16 19 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 20 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 21 N -0.88 -26.04 13.96 55.43 0.77 -25.27 16 22 Si 0.87 19.94 27.47 -169.99 -4.67 15.28 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 26 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 27 H 0.09 1.67 6.52 -51.93 -0.34 1.33 16 28 H 0.07 1.22 7.05 -51.93 -0.37 0.85 16 29 H 0.08 0.73 7.08 -51.93 -0.37 0.36 16 30 H 0.08 0.74 6.12 -51.93 -0.32 0.42 16 31 H 0.06 0.33 7.11 -51.93 -0.37 -0.04 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.30 8.09 -51.93 -0.42 -0.12 16 34 H 0.06 0.56 6.87 -51.93 -0.36 0.21 16 35 H 0.07 0.47 7.50 -51.93 -0.39 0.08 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.18 2.46 5.20 -52.48 -0.27 2.19 16 38 H 0.05 1.17 7.57 -51.93 -0.39 0.78 16 39 H 0.05 1.16 6.06 -51.93 -0.31 0.84 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 325.05 15.07 4.90 4.90 Total: -1.00 -33.14 325.05 -6.78 -39.92 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.61 Total: 1.38 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.81 Total: -2.16 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.33 Total: -48.06 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.67 Total: 15.28 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.14 -6.78 -39.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897852191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.763 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds