Wall clock time and date at job start Mon Mar 30 2020 02:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38044 * 126.29067 * 2 1 4 4 C 1.47424 * 126.41867 * 0.02562 * 3 2 1 5 5 O 1.21609 * 119.99733 * 0.32682 * 4 3 2 6 6 N 1.34769 * 120.00018 * 180.32603 * 4 3 2 7 7 C 1.47061 * 136.06051 * 359.62597 * 6 4 3 8 8 C 1.53758 * 87.89238 * 152.96287 * 7 6 4 9 9 H 1.08991 * 114.39951 * 272.68547 * 8 7 6 10 10 C 1.53002 * 114.26740 * 139.78825 * 8 7 6 11 11 C 1.47072 * 136.05468 * 179.97438 * 6 4 3 12 12 H 1.08994 * 113.47224 * 321.86274 * 11 6 4 13 13 C 1.53002 * 113.46928 * 92.24706 * 11 6 4 14 14 C 1.41288 * 107.16579 * 180.26245 * 3 2 1 15 15 N 1.30449 * 108.02555 * 359.74100 * 14 3 2 16 16 N 1.34253 * 126.28759 * 179.82146 * 2 1 3 17 17 C 1.46506 * 125.75977 * 359.97438 * 16 2 1 18 18 C 1.50699 * 109.46892 * 269.72125 * 17 16 2 19 19 H 1.08002 * 120.00511 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99783 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99573 * 180.27665 * 20 18 17 22 22 Si 1.86800 * 119.99781 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 89.99934 * 22 20 18 24 24 H 1.48499 * 109.47026 * 209.99782 * 22 20 18 25 25 H 1.48496 * 109.47474 * 329.99818 * 22 20 18 26 26 H 1.08993 * 109.47202 * 270.20525 * 1 2 3 27 27 H 1.09003 * 109.47192 * 30.20349 * 1 2 3 28 28 H 1.08999 * 109.47185 * 150.20699 * 1 2 3 29 29 H 1.09003 * 113.47492 * 267.69894 * 7 6 4 30 30 H 1.09005 * 113.46964 * 38.13913 * 7 6 4 31 31 H 1.08999 * 109.47126 * 326.48540 * 10 8 7 32 32 H 1.09007 * 109.46790 * 86.48180 * 10 8 7 33 33 H 1.09002 * 109.47338 * 206.47849 * 10 8 7 34 34 H 1.09004 * 109.46899 * 40.49293 * 13 11 6 35 35 H 1.08997 * 109.47320 * 160.48944 * 13 11 6 36 36 H 1.08993 * 109.46897 * 280.49809 * 13 11 6 37 37 H 1.08003 * 125.99049 * 179.78428 * 14 3 2 38 38 H 1.08992 * 109.47369 * 149.72207 * 17 16 2 39 39 H 1.09005 * 109.46360 * 29.71821 * 17 16 2 40 40 H 0.97004 * 119.99485 * 179.72881 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5203 0.0005 5 8 0.6996 2.7878 0.0070 6 7 2.8000 3.5106 -0.0062 7 6 4.2681 3.5966 -0.0081 8 6 4.1309 4.9554 -0.7144 9 1 4.0699 4.8940 -1.8009 10 6 5.1122 6.0215 -0.2230 11 6 2.7683 4.9809 -0.0085 12 1 1.9694 5.3969 -0.6223 13 6 2.8178 5.5938 1.3925 14 6 3.6590 0.6498 -0.0062 15 7 3.6340 -0.6545 -0.0040 16 7 2.3016 -1.0822 0.0034 17 6 1.8500 -2.4759 0.0082 18 6 1.7023 -2.9510 1.4307 19 1 1.9231 -2.2820 2.2493 20 6 1.2852 -4.2400 1.6872 21 7 1.1510 -4.6529 2.9286 22 14 0.9026 -5.3969 0.2714 23 1 2.1329 -6.1357 -0.1104 24 1 -0.1447 -6.3627 0.6905 25 1 0.4155 -4.6122 -0.8914 26 1 -0.3633 0.0037 1.0276 27 1 -0.3634 0.8882 -0.5170 28 1 -0.3633 -0.8918 -0.5106 29 1 4.7002 3.6679 0.9900 30 1 4.7468 2.8333 -0.6217 31 1 5.3010 5.8787 0.8410 32 1 6.0492 5.9340 -0.7732 33 1 4.6858 7.0111 -0.3869 34 1 3.5254 5.0377 2.0075 35 1 3.1359 6.6339 1.3231 36 1 1.8274 5.5460 1.8451 37 1 4.5449 1.2675 -0.0111 38 1 2.5820 -3.0968 -0.5080 39 1 0.8887 -2.5480 -0.5007 40 1 0.8538 -5.5585 3.1090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897852191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:23 Heat of formation + Delta-G solvation = 48.437157 kcal Electronic energy + Delta-G solvation = -21532.367390 eV Core-core repulsion = 18349.142192 eV Total energy + Delta-G solvation = -3183.225198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.46316 -41.38052 -38.87005 -35.80759 -34.12816 -32.99828 -32.62042 -30.56815 -29.68394 -28.54320 -27.17660 -25.48077 -24.60398 -23.19838 -21.41799 -20.40660 -19.31156 -19.23088 -18.14874 -17.34400 -16.80181 -16.61313 -16.50786 -15.84957 -15.47241 -15.41326 -14.80961 -14.47800 -14.24072 -14.01622 -13.90418 -13.77346 -13.65782 -13.30721 -13.14756 -13.06209 -12.87268 -12.68613 -12.58643 -12.35583 -12.15424 -11.94235 -11.86568 -11.73493 -11.01273 -10.94100 -10.75454 -10.32166 -9.83131 -9.39498 -8.45075 -6.57553 0.59019 1.23607 1.31964 1.35110 1.43412 1.54715 1.97981 2.23054 2.47228 2.87249 3.30009 3.52023 3.65784 3.92460 4.05388 4.07966 4.11862 4.26078 4.30098 4.37986 4.42989 4.55165 4.61166 4.64098 4.67528 4.79374 4.95891 4.98875 5.01654 5.03350 5.12145 5.14794 5.19182 5.29181 5.35764 5.57690 5.61386 5.79166 6.17469 6.45061 6.70227 6.78308 7.06253 7.25628 8.71528 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035562 B = 0.003895 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.163386 B = 7186.325876 C = 7407.728551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.147 3.853 3 C -0.327 4.327 4 C 0.625 3.375 5 O -0.590 6.590 6 N -0.648 5.648 7 C 0.090 3.910 8 C -0.102 4.102 9 H 0.108 0.892 10 C -0.136 4.136 11 C 0.123 3.877 12 H 0.073 0.927 13 C -0.150 4.150 14 C 0.076 3.924 15 N -0.330 5.330 16 N -0.336 5.336 17 C 0.233 3.767 18 C -0.555 4.555 19 H 0.024 0.976 20 C 0.023 3.977 21 N -0.935 5.935 22 Si 0.951 3.049 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.235 1.235 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.040 0.960 37 H 0.221 0.779 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.099 19.965 -9.580 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.011 3.989 3 C -0.342 4.342 4 C 0.418 3.582 5 O -0.472 6.472 6 N -0.382 5.382 7 C -0.032 4.032 8 C -0.121 4.121 9 H 0.126 0.874 10 C -0.194 4.194 11 C 0.020 3.980 12 H 0.092 0.908 13 C -0.208 4.208 14 C -0.110 4.110 15 N -0.150 5.150 16 N -0.113 5.113 17 C 0.114 3.886 18 C -0.593 4.593 19 H 0.043 0.957 20 C -0.177 4.177 21 N -0.573 5.573 22 Si 0.772 3.228 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.158 1.158 26 H 0.095 0.905 27 H 0.119 0.881 28 H 0.102 0.898 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.059 0.941 37 H 0.237 0.763 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.959 18.526 -9.456 21.933 hybrid contribution -0.831 -0.384 0.341 0.976 sum 6.129 18.142 -9.116 21.208 Atomic orbital electron populations 1.20579 0.85618 1.04525 1.03821 1.21953 0.96016 0.86612 0.94295 1.19929 0.93496 0.92836 1.27962 1.16719 0.83908 0.83076 0.74517 1.90664 1.17633 1.84502 1.54424 1.49538 1.08726 1.07014 1.72917 1.23626 0.79564 0.98087 1.01948 1.22960 0.93873 0.94907 1.00365 0.87429 1.21687 0.98263 0.97469 1.01958 1.22755 0.98743 0.78675 0.97788 0.90849 1.21982 1.01808 1.02536 0.94459 1.24662 0.97689 0.91554 0.97131 1.77084 0.98059 1.14226 1.25628 1.48784 1.03427 1.07335 1.51750 1.19937 0.96873 0.74371 0.97467 1.21178 1.48378 0.98885 0.90870 0.95728 1.25838 0.93546 0.99222 0.99105 1.70026 1.46480 1.19278 1.21488 0.85673 0.79226 0.78784 0.79115 1.18646 1.19895 1.15799 0.90463 0.88093 0.89815 0.88092 0.89304 0.91429 0.90825 0.90926 0.91658 0.87950 0.94059 0.76277 0.92465 0.90917 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.28 9.56 71.24 0.68 -2.60 16 2 C 0.15 6.21 7.01 42.14 0.30 6.50 16 3 C -0.33 -12.56 6.13 -20.15 -0.12 -12.69 16 4 C 0.62 22.47 8.06 86.66 0.70 23.16 16 5 O -0.59 -24.59 15.62 -4.06 -0.06 -24.65 16 6 N -0.65 -16.88 3.49 -836.95 -2.92 -19.80 16 7 C 0.09 1.47 6.35 83.27 0.53 2.00 16 8 C -0.10 -1.25 4.67 -10.37 -0.05 -1.30 16 9 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 10 C -0.14 -0.92 8.63 71.98 0.62 -0.30 16 11 C 0.12 2.34 4.87 41.78 0.20 2.54 16 12 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 13 C -0.15 -2.39 8.58 71.98 0.62 -1.77 16 14 C 0.08 2.69 11.14 85.65 0.95 3.64 16 15 N -0.33 -14.35 12.50 -56.27 -0.70 -15.05 16 16 N -0.34 -15.40 3.56 -336.69 -1.20 -16.60 16 17 C 0.23 11.03 5.04 85.63 0.43 11.46 16 18 C -0.56 -31.85 9.94 25.60 0.25 -31.59 16 19 H 0.02 1.64 8.06 -2.91 -0.02 1.61 16 20 C 0.02 1.30 5.47 84.66 0.46 1.76 16 21 N -0.93 -56.89 13.96 21.45 0.30 -56.59 16 22 Si 0.95 40.64 27.47 68.60 1.88 42.53 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 25 H -0.24 -8.89 6.54 99.48 0.65 -8.24 16 26 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 27 H 0.10 3.62 6.52 -2.39 -0.02 3.60 16 28 H 0.08 2.85 7.05 -2.39 -0.02 2.83 16 29 H 0.10 1.39 7.08 -2.39 -0.02 1.37 16 30 H 0.09 1.32 6.12 -2.38 -0.01 1.31 16 31 H 0.07 0.43 7.11 -2.39 -0.02 0.41 16 32 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 33 H 0.07 0.39 8.09 -2.39 -0.02 0.37 16 34 H 0.06 1.01 6.87 -2.39 -0.02 1.00 16 35 H 0.10 1.00 7.50 -2.39 -0.02 0.99 16 36 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.22 5.48 5.20 -2.91 -0.02 5.46 16 38 H 0.06 2.61 7.57 -2.39 -0.02 2.59 16 39 H 0.07 3.11 6.06 -2.38 -0.01 3.10 16 40 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -76.09 325.05 3.86 -72.23 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.99 Total: 17.11 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 5.58 Total: 0.82 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -4.53 Total: -108.04 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.06 Total: -24.65 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 1.88 Total: 42.53 kcal Total: -76.09 3.86 -72.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897852191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.663 kcal (2) G-P(sol) polarization free energy of solvation -76.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds