Wall clock time and date at job start Mon Mar 30 2020 02:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38049 * 126.29196 * 2 1 4 4 C 1.47435 * 126.41008 * 0.02562 * 3 2 1 5 5 O 1.21595 * 120.00181 * 0.21897 * 4 3 2 6 6 N 1.34776 * 119.99721 * 180.21497 * 4 3 2 7 7 C 1.47068 * 136.05365 * 0.02562 * 6 4 3 8 8 C 1.53504 * 87.98322 * 207.08294 * 7 6 4 9 9 H 1.08995 * 114.20708 * 220.15118 * 8 7 6 10 10 C 1.52994 * 114.20823 * 87.51846 * 8 7 6 11 11 C 1.47063 * 136.05865 * 179.62861 * 6 4 3 12 12 H 1.08998 * 113.46451 * 38.13784 * 11 6 4 13 13 C 1.53001 * 113.46901 * 267.69796 * 11 6 4 14 14 C 1.41282 * 107.17290 * 180.17529 * 3 2 1 15 15 N 1.30449 * 108.02396 * 359.57349 * 14 3 2 16 16 N 1.34254 * 126.29580 * 179.70833 * 2 1 3 17 17 C 1.46508 * 125.75138 * 359.97438 * 16 2 1 18 18 C 1.50700 * 109.46824 * 270.02046 * 17 16 2 19 19 H 1.08000 * 120.00120 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99767 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00108 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99772 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47150 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47173 * 120.00448 * 22 20 18 25 25 H 1.48497 * 109.47508 * 240.00476 * 22 20 18 26 26 H 1.09002 * 109.47104 * 270.31460 * 1 2 3 27 27 H 1.08999 * 109.47228 * 30.32185 * 1 2 3 28 28 H 1.09010 * 109.46969 * 150.31937 * 1 2 3 29 29 H 1.08996 * 113.46914 * 321.85473 * 7 6 4 30 30 H 1.08995 * 113.46902 * 92.30873 * 7 6 4 31 31 H 1.08999 * 109.47389 * 79.50766 * 10 8 7 32 32 H 1.09001 * 109.47524 * 199.50675 * 10 8 7 33 33 H 1.09001 * 109.47436 * 319.50958 * 10 8 7 34 34 H 1.08998 * 109.46814 * 79.50833 * 13 11 6 35 35 H 1.08993 * 109.47156 * 199.50290 * 13 11 6 36 36 H 1.08992 * 109.46929 * 319.50319 * 13 11 6 37 37 H 1.08002 * 125.99189 * 179.84240 * 14 3 2 38 38 H 1.08996 * 109.47248 * 30.02525 * 17 16 2 39 39 H 1.09000 * 109.47111 * 150.02713 * 17 16 2 40 40 H 0.97004 * 119.99448 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8857 2.5204 0.0005 5 8 0.6995 2.7878 0.0051 6 7 2.7998 3.5108 -0.0039 7 6 4.2679 3.5967 -0.0102 8 6 4.1372 4.9574 0.6880 9 1 4.8364 5.7128 0.3294 10 6 4.0660 4.8752 2.2141 11 6 2.7680 4.9810 -0.0117 12 1 1.9719 5.4012 0.6030 13 6 2.8124 5.5841 -1.4171 14 6 3.6590 0.6500 -0.0041 15 7 3.6341 -0.6543 0.0028 16 7 2.3017 -1.0820 0.0055 17 6 1.8501 -2.4758 0.0131 18 6 1.6953 -2.9458 1.4366 19 1 1.9113 -2.2735 2.2538 20 6 1.2770 -4.2338 1.6956 21 7 1.0136 -5.0523 0.7005 22 14 1.0845 -4.8162 3.4600 23 1 1.4400 -3.7121 4.3873 24 1 -0.3235 -5.2256 3.6953 25 1 1.9832 -5.9736 3.7002 26 1 -0.3633 0.0056 1.0277 27 1 -0.3633 0.8871 -0.5188 28 1 -0.3633 -0.8929 -0.5089 29 1 4.7499 2.8374 0.6057 30 1 4.6947 3.6617 -1.0111 31 1 5.0693 4.7399 2.6179 32 1 3.6370 5.7966 2.6080 33 1 3.4409 4.0305 2.5037 34 1 1.8203 5.5333 -1.8657 35 1 3.1306 6.6247 -1.3561 36 1 3.5178 5.0238 -2.0307 37 1 4.5449 1.2677 -0.0076 38 1 0.8916 -2.5499 -0.5003 39 1 2.5848 -3.0985 -0.4972 40 1 0.7189 -5.9583 0.8828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897852193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:26 Heat of formation + Delta-G solvation = 64.102301 kcal Electronic energy + Delta-G solvation = -21615.937121 eV Core-core repulsion = 18433.391215 eV Total energy + Delta-G solvation = -3182.545906 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.99158 -40.21318 -37.45920 -33.89294 -32.20190 -31.39964 -30.94380 -30.28502 -27.49096 -26.92615 -26.26032 -24.09220 -23.12269 -21.96322 -20.22703 -19.06968 -18.08191 -16.90618 -16.66635 -16.08957 -15.62068 -15.18481 -14.58612 -14.51143 -14.04112 -13.62003 -13.42593 -13.35085 -13.14826 -12.60130 -12.48050 -12.32892 -12.31511 -12.08347 -11.89386 -11.71713 -11.47345 -11.45560 -11.23514 -11.08639 -10.90013 -10.36143 -10.29481 -10.12813 -9.90024 -9.31663 -8.70931 -8.61426 -8.53745 -7.86724 -6.33103 -4.40684 2.21304 2.82420 2.94569 3.17375 3.25280 3.29957 3.44888 3.92360 4.05957 4.24982 4.54887 4.83589 4.99109 5.02487 5.04383 5.15464 5.23708 5.28431 5.36373 5.42173 5.54820 5.65666 5.67780 5.73699 5.78301 5.83274 5.90442 6.02134 6.12893 6.20227 6.21200 6.48222 6.61570 6.82750 6.92123 7.19356 7.57478 7.78047 7.80524 7.98380 8.39490 8.63008 8.66519 9.26206 10.75187 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028480 B = 0.004086 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.895100 B = 6851.533846 C = 7050.273845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.164 3.836 3 C -0.326 4.326 4 C 0.632 3.368 5 O -0.555 6.555 6 N -0.641 5.641 7 C 0.098 3.902 8 C -0.126 4.126 9 H 0.095 0.905 10 C -0.133 4.133 11 C 0.133 3.867 12 H 0.084 0.916 13 C -0.155 4.155 14 C 0.054 3.946 15 N -0.297 5.297 16 N -0.314 5.314 17 C 0.251 3.749 18 C -0.539 4.539 19 H 0.066 0.934 20 C 0.067 3.933 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.177 0.823 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.686 18.814 -1.965 19.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.026 3.974 3 C -0.342 4.342 4 C 0.426 3.574 5 O -0.434 6.434 6 N -0.377 5.377 7 C -0.025 4.025 8 C -0.145 4.145 9 H 0.113 0.887 10 C -0.190 4.190 11 C 0.029 3.971 12 H 0.102 0.898 13 C -0.213 4.213 14 C -0.133 4.133 15 N -0.117 5.117 16 N -0.091 5.091 17 C 0.134 3.866 18 C -0.577 4.577 19 H 0.084 0.916 20 C -0.137 4.137 21 N -0.527 5.527 22 Si 0.735 3.265 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.206 1.206 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.194 0.806 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.500 17.287 -2.003 18.251 hybrid contribution -0.413 0.152 0.815 0.926 sum 5.087 17.439 -1.188 18.204 Atomic orbital electron populations 1.20559 0.86814 1.03698 1.03919 1.21457 0.94934 0.86525 0.94459 1.19591 0.93169 0.92103 1.29294 1.16856 0.83669 0.82804 0.74074 1.90690 1.16107 1.84006 1.52640 1.49399 1.07110 1.06027 1.75120 1.23162 0.82289 0.96759 1.00335 1.22925 0.97341 0.97853 0.96353 0.88714 1.21509 1.02214 1.02451 0.92805 1.22490 0.97259 0.81053 0.96297 0.89818 1.21971 1.02904 1.00697 0.95714 1.23982 0.96615 0.92500 1.00169 1.77139 0.98607 1.12312 1.23675 1.49359 1.02507 1.08261 1.48937 1.19855 0.96399 0.70925 0.99453 1.21290 1.47272 0.98156 0.90999 0.91622 1.24924 0.94453 0.95962 0.98333 1.69925 1.44594 1.07014 1.31196 0.86270 0.77969 0.78818 0.83473 1.19534 1.20536 1.20553 0.89839 0.88940 0.90853 0.90059 0.89857 0.91956 0.92155 0.91994 0.91846 0.91149 0.91949 0.80609 0.92573 0.92522 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 9.56 36.01 0.34 -1.39 16 2 C 0.16 3.48 7.01 -81.60 -0.57 2.91 16 3 C -0.33 -6.37 6.13 -105.06 -0.64 -7.01 16 4 C 0.63 11.48 8.07 -12.52 -0.10 11.38 16 5 O -0.56 -11.47 15.62 5.28 0.08 -11.39 16 6 N -0.64 -8.81 3.26 -178.49 -0.58 -9.39 16 7 C 0.10 0.96 6.31 -8.50 -0.05 0.91 16 8 C -0.13 -1.02 4.37 -89.96 -0.39 -1.41 16 9 H 0.09 0.55 8.11 -51.93 -0.42 0.13 16 10 C -0.13 -1.13 9.71 37.15 0.36 -0.77 16 11 C 0.13 1.40 4.55 -72.25 -0.33 1.07 16 12 H 0.08 0.95 8.13 -51.93 -0.42 0.53 16 13 C -0.15 -1.34 9.79 37.16 0.36 -0.97 16 14 C 0.05 1.00 11.14 -16.98 -0.19 0.81 16 15 N -0.30 -6.60 12.50 30.86 0.39 -6.22 16 16 N -0.31 -7.30 3.56 -57.77 -0.21 -7.51 16 17 C 0.25 6.36 5.97 -5.19 -0.03 6.32 16 18 C -0.54 -14.72 9.39 -34.44 -0.32 -15.04 16 19 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 20 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 21 N -0.89 -24.79 13.29 55.43 0.74 -24.05 16 22 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 27 H 0.09 1.68 6.52 -51.93 -0.34 1.34 16 28 H 0.07 1.34 7.05 -51.92 -0.37 0.97 16 29 H 0.08 0.80 6.11 -51.93 -0.32 0.48 16 30 H 0.08 0.68 7.28 -51.93 -0.38 0.30 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.69 7.94 -51.93 -0.41 0.28 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.52 7.01 -51.93 -0.36 0.16 16 37 H 0.18 2.49 5.21 -52.49 -0.27 2.22 16 38 H 0.06 1.41 7.02 -51.93 -0.36 1.05 16 39 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 331.89 15.07 5.00 5.00 Total: -1.00 -31.75 331.89 -7.01 -38.76 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.74 Total: 0.30 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.66 Total: -1.48 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.33 Total: -47.17 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.75 -7.01 -38.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897852193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.863 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds